Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003925

Physical Location & Seq

Genomic Coordinates Forward (+)

20743858 .. 20747641

Gene Structure 3784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G234100.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCAGATTCGGAATCGAACTATATCGACGAGCATTCAGCTGCCTCAACAACCATAACATTCGACCGACCGATCCCGTTGCTCCGAGGACCAGTTCGGGCTGGCCCACCCGATGACCCATCCTCCGGTCCGTACGTTCTGGCGTTTCGAGACCCCAGGACATGGGCAAACGCGTACAGAGCCTGCGAGTCCAAGATCATCGAGCAGTGTGAGGCCGGTGCCAGGATCGGGTGCGCCATCAGCGCATCGGACAAGTGTAAGCCCCCGTGGTGGCGAGCTCTGATTGGTCCGAAAGCACCGGACTTGAAGCAGAGGGAGCAGTGCGAAGAGAGAGAAATGGAGGGGTGTTTGTCTGCGGCGAAAGATAAGTGCGTTGGGTTCGCGAAGGAGAAGTGCTTGAAGCCCTTCAGAGACGCGAGAATTGCTGGCCTTCATGTAAAGCAGGCTGAGAGGTTGGTTTGCTGGGCAACTGTGATGGATCGGAGCACGTGGCTCAGTTTGATTGGATTGGACAAATTGGGTTATTTGGGTTCGGGTAATTATGGATTTGGAGCAACAAATTATAGGGCTGGTGAGTTATTTCGTTCTGATTGTGACTTTGATCTTGTTTTGGGTAGTAGCAACGGGATATTGAAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

23.41

Weight (kDa)

7.46

Isoelectric Point (pI)

26.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63390
fragaria_vesca	FvH4_2g22890 FvH4_2g22890 FvH4_2g22890
malus_domestica	MD03G1257200.v1.1 MD11G1277900.v1.1
prunus_persica	Prupe.1G517900_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1
pyrus_communis	pycom03g20390 pycom11g24570
rosa_chinensis	RchiOBHm_Chr6g0289821
rosa_laevigata	RLG00000012265
rosa_multiflora	Rmu_co8501753.1_g000001 Rmu_sc0000062.1_g000022 Rmu_sc0000616.1_g000017 Rmu_sc0002638.1_g000015 Rmu_sc0011921.1_g000014
rosa_roxburghii	Rroxscaffold_7G00177530
rosa_rugosa	Rorug06G0207200
rosa_samantha	Rh1CG355400 Rh3BG119600 Rh4CG249200 Rh6AG318700 Rh6BG325900 Rh6DG317200
rosa_wichuraiana	Rw2G018340 Rw4G013870 Rw5G021300 Rw6G027490 Rw7G035100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	218
AccB7I	CCANNNNNTGG	1 cut(s)	162
AccII	CGCG	3 cut(s)	173, 383, 416
AciI	CCGC	1 cut(s)	356
AclWI	GGATC	3 cut(s)	67, 233, 486
AcuI	CTGAAG	1 cut(s)	391
AcvI	CACGTG	1 cut(s)	489
AfaI	GTAC	2 cut(s)	134, 176
AfiI	CCNNNNNNNGG	5 cut(s)	125, 162, 222, 228, 270
AflIII	ACRYGT	1 cut(s)	171
AgsI	TTSAA	3 cut(s)	307, 400, 634
AjnI	CCWGG	2 cut(s)	155, 221
AluBI	AGCT	2 cut(s)	41, 278
AluI	AGCT	2 cut(s)	41, 278
Alw21I	GWGCWC	2 cut(s)	280, 488
Alw26I	GTCTC	2 cut(s)	144, 405
AlwI	GGATC	3 cut(s)	67, 233, 486
AlwNI	CAGNNNCTG	1 cut(s)	183
AoxI	GGCC	3 cut(s)	103, 213, 427
ApeKI	GCWGC	1 cut(s)	41
Asp700I	GAANNNNTTC	1 cut(s)	404
AspLEI	GCGC	2 cut(s)	236, 245
AspS9I	GGNCC	4 cut(s)	89, 104, 128, 287
AsuHPI	GGTGA	1 cut(s)	584
AvaII	GGWCC	3 cut(s)	89, 128, 287
BanI	GGYRCC	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	280
BbrPI	CACGTG	1 cut(s)	489
Bbv12I	GWGCWC	2 cut(s)	280, 488
BbvI	GCAGC	1 cut(s)	28
BccI	CCATC	3 cut(s)	127, 245, 469
BcgI	CGANNNNNNTGC	2 cut(s)	61, 95
BciT130I	CCWGG	2 cut(s)	157, 223
BcoDI	GTCTC	2 cut(s)	144, 405
BisI	GCNGC	2 cut(s)	42, 357
BlsI	GCNGC	2 cut(s)	43, 358
Bme1390I	CCNGG	2 cut(s)	157, 223
Bme18I	GGWCC	3 cut(s)	89, 128, 287
BmgT120I	GGNCC	4 cut(s)	89, 104, 128, 287
BmiI	GGNNCC	1 cut(s)	220
BmrFI	CCNGG	2 cut(s)	157, 223
BmsI	GCATC	1 cut(s)	254
BsaAI	YACGTR	1 cut(s)	489
BsaI	GGTCTC	1 cut(s)	144
BsaJI	CCNNGG	3 cut(s)	85, 155, 266
BsaWI	WCCGGW	2 cut(s)	125, 298
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	5 cut(s)	125, 162, 222, 228, 270
Bse118I	RCCGGY	1 cut(s)	215
Bse1I	ACTGG	1 cut(s)	92
BseBI	CCWGG	2 cut(s)	157, 223
BseDI	CCNNGG	3 cut(s)	85, 155, 266
BseGI	GGATG	1 cut(s)	119
BseLI	CCNNNNNNNGG	5 cut(s)	125, 162, 222, 228, 270
BseMII	CTCAG	2 cut(s)	438, 508
BseNI	ACTGG	1 cut(s)	92
BseXI	GCAGC	1 cut(s)	28
BseYI	CCCAGC	1 cut(s)	462
Bsh1236I	CGCG	3 cut(s)	173, 383, 416
Bsh1285I	CGRYCG	2 cut(s)	67, 71
BshFI	GGCC	3 cut(s)	105, 215, 429
BshNI	GGYRCC	1 cut(s)	218
BsiEI	CGRYCG	2 cut(s)	67, 71
BsiHKAI	GWGCWC	2 cut(s)	280, 488
BsiSI	CCGG	3 cut(s)	126, 216, 299
BsiWI	CGTACG	1 cut(s)	132
BslI	CCNNNNNNNGG	5 cut(s)	125, 162, 222, 228, 270
BsmAI	GTCTC	2 cut(s)	144, 405
BsmBI	CGTCTC	1 cut(s)	405
BsmI	GAATGC	1 cut(s)	34
BsnI	GGCC	3 cut(s)	105, 215, 429
Bso31I	GGTCTC	1 cut(s)	144
Bsp1286I	GDGCHC	2 cut(s)	280, 488
Bsp143I	GATC	5 cut(s)	72, 195, 225, 478, 601
Bsp68I	TCGCGA	1 cut(s)	383
BspACI	CCGC	1 cut(s)	356
BspANI	GGCC	3 cut(s)	105, 215, 429
BspCNI	CTCAG	2 cut(s)	439, 507
BspFNI	CGCG	3 cut(s)	173, 383, 416
BspLI	GGNNCC	1 cut(s)	220
BspPI	GGATC	3 cut(s)	67, 233, 486
BspT107I	GGYRCC	1 cut(s)	218
BspTNI	GGTCTC	1 cut(s)	144
BsrFI	RCCGGY	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	92
BssAI	RCCGGY	1 cut(s)	215
BssECI	CCNNGG	3 cut(s)	85, 155, 266
BssMI	GATC	5 cut(s)	72, 195, 225, 478, 601
Bst2UI	CCWGG	2 cut(s)	157, 223
Bst4CI	ACNGT	1 cut(s)	472
Bst6I	CTCTTC	1 cut(s)	321
BstBAI	YACGTR	1 cut(s)	489
BstC8I	GCNNGC	5 cut(s)	103, 184, 276, 427, 444
BstDEI	CTNAG	2 cut(s)	447, 494
BstDSI	CCRYGG	1 cut(s)	266
BstF5I	GGATG	1 cut(s)	119
BstFNI	CGCG	3 cut(s)	173, 383, 416
BstHHI	GCGC	2 cut(s)	236, 245
BstKTI	GATC	5 cut(s)	75, 198, 228, 481, 604
BstMAI	GTCTC	2 cut(s)	144, 405
BstMBI	GATC	5 cut(s)	72, 195, 225, 478, 601
BstMCI	CGRYCG	2 cut(s)	67, 71
BstMWI	GCNNNNNNNGC	5 cut(s)	179, 240, 242, 316, 422
BstNI	CCWGG	2 cut(s)	157, 223
BstSCI	CCNGG	2 cut(s)	155, 221
BstUI	CGCG	3 cut(s)	173, 383, 416
BstV1I	GCAGC	1 cut(s)	28
BsuRI	GGCC	3 cut(s)	105, 215, 429
BtgI	CCRYGG	1 cut(s)	266
BtsCI	GGATG	1 cut(s)	119
BtsI	GCAGTG	2 cut(s)	212, 326
BtsIMutI	CAGTG	2 cut(s)	212, 326
BtuMI	TCGCGA	1 cut(s)	383
Cac8I	GCNNGC	5 cut(s)	103, 184, 276, 427, 444
CaiI	CAGNNNCTG	1 cut(s)	183
CfoI	GCGC	2 cut(s)	236, 245
Cfr10I	RCCGGY	1 cut(s)	215
Cfr13I	GGNCC	4 cut(s)	89, 104, 128, 287
CpoI	CGGWCCG	1 cut(s)	128
CseI	GACGC	1 cut(s)	422
Csp6I	GTAC	2 cut(s)	133, 175
CspI	CGGWCCG	1 cut(s)	128
CviAII	CATG	2 cut(s)	162, 434
CviQI	GTAC	2 cut(s)	133, 175
DdeI	CTNAG	2 cut(s)	447, 494
DpnI	GATC	5 cut(s)	74, 197, 227, 480, 603
DpnII	GATC	5 cut(s)	72, 195, 225, 478, 601
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
Ecl136II	GAGCTC	1 cut(s)	278
Eco24I	GRGCYC	1 cut(s)	280
Eco31I	GGTCTC	1 cut(s)	144
Eco47I	GGWCC	3 cut(s)	89, 128, 287
Eco53kI	GAGCTC	1 cut(s)	278
Eco57I	CTGAAG	1 cut(s)	391
Eco72I	CACGTG	1 cut(s)	489
EcoICRI	GAGCTC	1 cut(s)	278
EcoRII	CCWGG	2 cut(s)	155, 221
EcoT38I	GRGCYC	1 cut(s)	280
Esp3I	CGTCTC	1 cut(s)	405
FaeI	CATG	2 cut(s)	165, 437
FaiI	YATR	6 cut(s)	24, 56, 163, 435, 543, 564
FatI	CATG	2 cut(s)	161, 433
Fnu4HI	GCNGC	2 cut(s)	42, 357
FokI	GGATG	1 cut(s)	106
FriOI	GRGCYC	1 cut(s)	280
Fsp4HI	GCNGC	2 cut(s)	42, 357
GlaI	GCGC	2 cut(s)	235, 244
GluI	GCNGC	2 cut(s)	42, 357
GsaI	CCCAGC	1 cut(s)	466
HaeIII	GGCC	3 cut(s)	105, 215, 429
HapII	CCGG	3 cut(s)	126, 216, 299
HgaI	GACGC	1 cut(s)	422
HhaI	GCGC	2 cut(s)	236, 245
Hin1II	CATG	2 cut(s)	165, 437
Hin6I	GCGC	2 cut(s)	234, 243
HinP1I	GCGC	2 cut(s)	234, 243
HinfI	GANTC	3 cut(s)	8, 14, 188
HpaII	CCGG	3 cut(s)	126, 216, 299
HphI	GGTGA	1 cut(s)	584
Hpy188I	TCNGA	8 cut(s)	13, 86, 250, 282, 291, 410, 483, 589
Hpy188III	TCNNGA	2 cut(s)	149, 382
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	4 cut(s)	379, 415, 440, 628
HpyCH4III	ACNGT	1 cut(s)	472
HpyCH4IV	ACGT	2 cut(s)	135, 488
HpyF10VI	GCNNNNNNNGC	5 cut(s)	179, 240, 242, 316, 422
HpyF3I	CTNAG	2 cut(s)	447, 494
HpySE526I	ACGT	2 cut(s)	135, 488
Hsp92II	CATG	2 cut(s)	165, 437
HspAI	GCGC	2 cut(s)	234, 243
Kzo9I	GATC	5 cut(s)	72, 195, 225, 478, 601
LmnI	GCTCC	4 cut(s)	87, 316, 483, 551
Lsp1109I	GCAGC	1 cut(s)	28
LweI	GCATC	1 cut(s)	254
MaeII	ACGT	2 cut(s)	135, 488
MaeIII	GTNAC	1 cut(s)	593
MalI	GATC	5 cut(s)	74, 197, 227, 480, 603
MboI	GATC	5 cut(s)	72, 195, 225, 478, 601
MboII	GAAGA	1 cut(s)	338
MhlI	GDGCHC	2 cut(s)	280, 488
MluCI	AATT	4 cut(s)	420, 515, 538, 559
MluI	ACGCGT	1 cut(s)	171
MlyI	GAGTC	1 cut(s)	197
MnlI	CCTC	7 cut(s)	55, 80, 133, 205, 306, 334, 444
MroXI	GAANNNNTTC	1 cut(s)	404
MspA1I	CMGCKG	1 cut(s)	41
MspI	CCGG	3 cut(s)	126, 216, 299
MspR9I	CCNGG	2 cut(s)	157, 223
Mva1269I	GAATGC	1 cut(s)	34
MvaI	CCWGG	2 cut(s)	157, 223
MvnI	CGCG	3 cut(s)	173, 383, 416
MwoI	GCNNNNNNNGC	5 cut(s)	179, 240, 242, 316, 422
NdeII	GATC	5 cut(s)	72, 195, 225, 478, 601
NlaIII	CATG	2 cut(s)	165, 437
NlaIV	GGNNCC	1 cut(s)	220
NmuCI	GTSAC	1 cut(s)	593
NruI	TCGCGA	1 cut(s)	383
PctI	GAATGC	1 cut(s)	34
PdmI	GAANNNNTTC	1 cut(s)	404
PfeI	GAWTC	2 cut(s)	8, 14
Pfl23II	CGTACG	1 cut(s)	132
PflMI	CCANNNNNTGG	1 cut(s)	162
PkrI	GCNGC	2 cut(s)	43, 358
PleI	GAGTC	1 cut(s)	196
PmaCI	CACGTG	1 cut(s)	489
PmlI	CACGTG	1 cut(s)	489
PpsI	GAGTC	1 cut(s)	196
Ppu21I	YACGTR	1 cut(s)	489
Psp124BI	GAGCTC	1 cut(s)	280
Psp6I	CCWGG	2 cut(s)	155, 221
PspCI	CACGTG	1 cut(s)	489
PspFI	CCCAGC	1 cut(s)	462
PspGI	CCWGG	2 cut(s)	155, 221
PspLI	CGTACG	1 cut(s)	132
PspN4I	GGNNCC	1 cut(s)	220
PspPI	GGNCC	4 cut(s)	89, 104, 128, 287
PstNI	CAGNNNCTG	1 cut(s)	183
PvuII	CAGCTG	1 cut(s)	41
RruI	TCGCGA	1 cut(s)	383
RsaI	GTAC	2 cut(s)	134, 176
RsaNI	GTAC	2 cut(s)	133, 175
Rsr2I	CGGWCCG	1 cut(s)	128
RsrII	CGGWCCG	1 cut(s)	128
SacI	GAGCTC	1 cut(s)	280
SatI	GCNGC	2 cut(s)	42, 357
Sau3AI	GATC	5 cut(s)	72, 195, 225, 478, 601
Sau96I	GGNCC	4 cut(s)	89, 104, 128, 287
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	2 cut(s)	157, 223
SduI	GDGCHC	2 cut(s)	280, 488
SetI	ASST	6 cut(s)	43, 138, 280, 455, 491, 639
SfaNI	GCATC	1 cut(s)	254
SinI	GGWCC	3 cut(s)	89, 128, 287
Sse9I	AATT	4 cut(s)	420, 515, 538, 559
SsiI	CCGC	1 cut(s)	356
SstI	GAGCTC	1 cut(s)	280
StyD4I	CCNGG	2 cut(s)	155, 221
TaaI	ACNGT	1 cut(s)	472
TaiI	ACGT	2 cut(s)	138, 491
TaqI	TCGA	5 cut(s)	17, 27, 63, 148, 201
TaqII	GACCGA	2 cut(s)	81, 85
TasI	AATT	4 cut(s)	420, 515, 538, 559
TauI	GCSGC	1 cut(s)	359
TfiI	GAWTC	2 cut(s)	8, 14
TscAI	CASTG	2 cut(s)	212, 326
TseFI	GTSAC	1 cut(s)	593
TseI	GCWGC	1 cut(s)	41
Tsp45I	GTSAC	1 cut(s)	593
TspDTI	ATGAA	1 cut(s)	422
TspGWI	ACGGA	1 cut(s)	120
TspRI	CASTG	2 cut(s)	212, 326
Van91I	CCANNNNNTGG	1 cut(s)	162
VpaK11BI	GGWCC	3 cut(s)	89, 128, 287
XmnI	GAANNNNTTC	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.