Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003925

Physical Location & Seq

Genomic Coordinates Forward (+)

27477197 .. 27477559

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g24570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGCGGCTTCCGAATCGAACCCTATCGACGAGCATTCAGCCGCCACAACAACTATACGATTCGACAGCCCGGTACCATTACTCCGTGGACCGGTTCGGGCAGGGCCACCCGACGATCCGTCGTCCGGTCCGTACGTCCTGGCGTTTCGCGACCCAAAAGCTTGGGCGAACGCGTACAGAACCTGCGGGTCCAAGATCGTCGAGCAGTGCGAGGCCGGTGCCAGGATCGCGTGCGCCATTAGCGCATCGGAAAAGTGTAAGCCCCCGTGGTGGGGAGCTCTGATTGGCCAGAAAGTCAGACTTGAAGCAGAGCGAACAGTGCGAGGAGAGAGAAATGGAGGGGTGTTTGACGGCGGCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

12.8

Weight (kDa)

6.59

Isoelectric Point (pI)

30.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63390
fragaria_vesca	FvH4_2g22890 FvH4_2g22890 FvH4_2g22890
malus_domestica	MD03G1257200.v1.1 MD11G1277900.v1.1
prunus_persica	Prupe.1G517900_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1
pyrus_communis	pycom03g20390 pycom11g24570
rosa_chinensis	RchiOBHm_Chr6g0289821
rosa_laevigata	RLG00000012265
rosa_multiflora	Rmu_co8501753.1_g000001 Rmu_sc0000062.1_g000022 Rmu_sc0000616.1_g000017 Rmu_sc0002638.1_g000015 Rmu_sc0011921.1_g000014
rosa_roxburghii	Rroxscaffold_7G00177530
rosa_rugosa	Rorug06G0207200
rosa_samantha	Rh1CG355400 Rh3BG119600 Rh4CG249200 Rh6AG318700 Rh6BG325900 Rh6DG317200
rosa_wichuraiana	Rw2G018340 Rw4G013870 Rw5G021300 Rw6G027490 Rw7G035100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	191
Acc65I	GGTACC	1 cut(s)	73
AccB1I	GGYRCC	2 cut(s)	73, 218
AccII	CGCG	3 cut(s)	150, 173, 230
AciI	CCGC	4 cut(s)	5, 42, 186, 354
AclWI	GGATC	2 cut(s)	110, 233
AcoI	YGGCCR	1 cut(s)	286
AfaI	GTAC	3 cut(s)	75, 134, 176
AfiI	CCNNNNNNNGG	6 cut(s)	91, 125, 222, 270, 271, 272
AflIII	ACRYGT	1 cut(s)	171
AgeI	ACCGGT	1 cut(s)	91
AgsI	TTSAA	1 cut(s)	305
AhdI	GACNNNNNGTC	1 cut(s)	118
AjnI	CCWGG	2 cut(s)	138, 221
AluBI	AGCT	2 cut(s)	161, 278
AluI	AGCT	2 cut(s)	161, 278
Alw21I	GWGCWC	1 cut(s)	280
AlwI	GGATC	2 cut(s)	110, 233
AlwNI	CAGNNNCTG	1 cut(s)	183
AoxI	GGCC	3 cut(s)	104, 213, 286
AsiGI	ACCGGT	1 cut(s)	91
Asp718I	GGTACC	1 cut(s)	73
AspLEI	GCGC	2 cut(s)	236, 245
AspS9I	GGNCC	4 cut(s)	89, 104, 128, 189
AsuC2I	CCSGG	1 cut(s)	71
AvaII	GGWCC	3 cut(s)	89, 128, 189
BalI	TGGCCA	1 cut(s)	288
BanI	GGYRCC	2 cut(s)	73, 218
BanII	GRGCYC	1 cut(s)	280
Bbv12I	GWGCWC	1 cut(s)	280
BcgI	CGANNNNNNTGC	2 cut(s)	200, 234
BciT130I	CCWGG	2 cut(s)	140, 223
BcnI	CCSGG	1 cut(s)	71
BfuAI	ACCTGC	1 cut(s)	191
BisI	GCNGC	3 cut(s)	6, 42, 355
BlsI	GCNGC	3 cut(s)	7, 43, 356
Bme1390I	CCNGG	3 cut(s)	71, 140, 223
Bme18I	GGWCC	3 cut(s)	89, 128, 189
BmeRI	GACNNNNNGTC	1 cut(s)	118
BmgT120I	GGNCC	4 cut(s)	89, 104, 128, 189
BmiI	GGNNCC	3 cut(s)	75, 190, 220
BmrFI	CCNGG	3 cut(s)	71, 140, 223
BmsI	GCATC	1 cut(s)	254
BpuMI	CCSGG	1 cut(s)	71
BsaJI	CCNNGG	2 cut(s)	85, 266
BsaWI	WCCGGW	2 cut(s)	91, 125
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bsc4I	CCNNNNNNNGG	6 cut(s)	91, 125, 222, 270, 271, 272
Bse118I	RCCGGY	2 cut(s)	91, 215
BseBI	CCWGG	2 cut(s)	140, 223
BseDI	CCNNGG	2 cut(s)	85, 266
BseLI	CCNNNNNNNGG	6 cut(s)	91, 125, 222, 270, 271, 272
BseRI	GAGGAG	1 cut(s)	339
Bsh1236I	CGCG	3 cut(s)	150, 173, 230
BshFI	GGCC	3 cut(s)	106, 215, 288
BshNI	GGYRCC	2 cut(s)	73, 218
BshTI	ACCGGT	1 cut(s)	91
BsiHKAI	GWGCWC	1 cut(s)	280
BsiSI	CCGG	4 cut(s)	71, 92, 126, 216
BsiWI	CGTACG	1 cut(s)	132
BslI	CCNNNNNNNGG	6 cut(s)	91, 125, 222, 270, 271, 272
BsmI	GAATGC	1 cut(s)	34
BsnI	GGCC	3 cut(s)	106, 215, 288
Bsp1286I	GDGCHC	1 cut(s)	280
Bsp143I	GATC	3 cut(s)	115, 195, 225
Bsp68I	TCGCGA	1 cut(s)	150
BspACI	CCGC	4 cut(s)	5, 42, 186, 354
BspANI	GGCC	3 cut(s)	106, 215, 288
BspFNI	CGCG	3 cut(s)	150, 173, 230
BspLI	GGNNCC	3 cut(s)	75, 190, 220
BspMI	ACCTGC	1 cut(s)	191
BspPI	GGATC	2 cut(s)	110, 233
BspT107I	GGYRCC	2 cut(s)	73, 218
BsrFI	RCCGGY	2 cut(s)	91, 215
BssAI	RCCGGY	2 cut(s)	91, 215
BssECI	CCNNGG	2 cut(s)	85, 266
BssMI	GATC	3 cut(s)	115, 195, 225
Bst2UI	CCWGG	2 cut(s)	140, 223
Bst4CI	ACNGT	1 cut(s)	319
BstC8I	GCNNGC	1 cut(s)	232
BstDSI	CCRYGG	2 cut(s)	85, 266
BstFNI	CGCG	3 cut(s)	150, 173, 230
BstHHI	GCGC	2 cut(s)	236, 245
BstKTI	GATC	3 cut(s)	118, 198, 228
BstMBI	GATC	3 cut(s)	115, 195, 225
BstMWI	GCNNNNNNNGC	4 cut(s)	227, 240, 242, 319
BstNI	CCWGG	2 cut(s)	140, 223
BstSCI	CCNGG	3 cut(s)	69, 138, 221
BstUI	CGCG	3 cut(s)	150, 173, 230
BstXI	CCANNNNNNTGG	1 cut(s)	162
BsuRI	GGCC	3 cut(s)	106, 215, 288
BtgI	CCRYGG	2 cut(s)	85, 266
BtsI	GCAGTG	1 cut(s)	212
BtsIMutI	CAGTG	2 cut(s)	212, 324
BtuMI	TCGCGA	1 cut(s)	150
BveI	ACCTGC	1 cut(s)	191
Cac8I	GCNNGC	1 cut(s)	232
CaiI	CAGNNNCTG	1 cut(s)	183
CfoI	GCGC	2 cut(s)	236, 245
Cfr10I	RCCGGY	2 cut(s)	91, 215
Cfr13I	GGNCC	4 cut(s)	89, 104, 128, 189
CpoI	CGGWCCG	1 cut(s)	128
Csp6I	GTAC	3 cut(s)	74, 133, 175
CspAI	ACCGGT	1 cut(s)	91
CspI	CGGWCCG	1 cut(s)	128
CviJI	RGCY	9 cut(s)	8, 41, 69, 106, 161, 215, 262, 278, 288
CviKI_1	RGCY	9 cut(s)	8, 41, 69, 106, 161, 215, 262, 278, 288
CviQI	GTAC	3 cut(s)	74, 133, 175
DpnI	GATC	3 cut(s)	117, 197, 227
DpnII	GATC	3 cut(s)	115, 195, 225
DriI	GACNNNNNGTC	1 cut(s)	118
EaeI	YGGCCR	1 cut(s)	286
Eam1105I	GACNNNNNGTC	1 cut(s)	118
Ecl136II	GAGCTC	1 cut(s)	278
Eco24I	GRGCYC	1 cut(s)	280
Eco47I	GGWCC	3 cut(s)	89, 128, 189
Eco53kI	GAGCTC	1 cut(s)	278
EcoICRI	GAGCTC	1 cut(s)	278
EcoRII	CCWGG	2 cut(s)	138, 221
EcoT38I	GRGCYC	1 cut(s)	280
FaiI	YATR	1 cut(s)	56
FalI	AAGNNNNNCTT	2 cut(s)	285, 317
FauI	CCCGC	1 cut(s)	179
Fnu4HI	GCNGC	3 cut(s)	6, 42, 355
FriOI	GRGCYC	1 cut(s)	280
Fsp4HI	GCNGC	3 cut(s)	6, 42, 355
GlaI	GCGC	2 cut(s)	235, 244
GluI	GCNGC	3 cut(s)	6, 42, 355
HaeIII	GGCC	3 cut(s)	106, 215, 288
HapII	CCGG	4 cut(s)	71, 92, 126, 216
HhaI	GCGC	2 cut(s)	236, 245
Hin6I	GCGC	2 cut(s)	234, 243
HinP1I	GCGC	2 cut(s)	234, 243
HindIII	AAGCTT	1 cut(s)	159
HinfI	GANTC	2 cut(s)	14, 60
HpaII	CCGG	4 cut(s)	71, 92, 126, 216
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188I	TCNGA	4 cut(s)	13, 250, 282, 299
Hpy188III	TCNNGA	1 cut(s)	149
Hpy8I	GTNNAC	1 cut(s)	89
Hpy99I	CGWCG	4 cut(s)	32, 116, 124, 203
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4IV	ACGT	1 cut(s)	135
HpyF10VI	GCNNNNNNNGC	4 cut(s)	227, 240, 242, 319
HpySE526I	ACGT	1 cut(s)	135
HspAI	GCGC	2 cut(s)	234, 243
KpnI	GGTACC	1 cut(s)	77
Kzo9I	GATC	3 cut(s)	115, 195, 225
LmnI	GCTCC	1 cut(s)	275
LweI	GCATC	1 cut(s)	254
MaeII	ACGT	1 cut(s)	135
MalI	GATC	3 cut(s)	117, 197, 227
MboI	GATC	3 cut(s)	115, 195, 225
MhlI	GDGCHC	1 cut(s)	280
MlsI	TGGCCA	1 cut(s)	288
MluI	ACGCGT	1 cut(s)	171
MluNI	TGGCCA	1 cut(s)	288
MnlI	CCTC	3 cut(s)	205, 317, 332
Mox20I	TGGCCA	1 cut(s)	288
MscI	TGGCCA	1 cut(s)	288
Msp20I	TGGCCA	1 cut(s)	288
MspI	CCGG	4 cut(s)	71, 92, 126, 216
MspR9I	CCNGG	3 cut(s)	71, 140, 223
Mva1269I	GAATGC	1 cut(s)	34
MvaI	CCWGG	2 cut(s)	140, 223
MvnI	CGCG	3 cut(s)	150, 173, 230
MwoI	GCNNNNNNNGC	4 cut(s)	227, 240, 242, 319
NciI	CCSGG	1 cut(s)	71
NdeII	GATC	3 cut(s)	115, 195, 225
NlaIV	GGNNCC	3 cut(s)	75, 190, 220
NruI	TCGCGA	1 cut(s)	150
PcsI	WCGNNNNNNNCGW	2 cut(s)	128, 207
PctI	GAATGC	1 cut(s)	34
PfeI	GAWTC	2 cut(s)	14, 60
Pfl23II	CGTACG	1 cut(s)	132
PinAI	ACCGGT	1 cut(s)	91
PkrI	GCNGC	3 cut(s)	7, 43, 356
Psp124BI	GAGCTC	1 cut(s)	280
Psp6I	CCWGG	2 cut(s)	138, 221
PspGI	CCWGG	2 cut(s)	138, 221
PspLI	CGTACG	1 cut(s)	132
PspN4I	GGNNCC	3 cut(s)	75, 190, 220
PspPI	GGNCC	4 cut(s)	89, 104, 128, 189
PstNI	CAGNNNCTG	1 cut(s)	183
RruI	TCGCGA	1 cut(s)	150
RsaI	GTAC	3 cut(s)	75, 134, 176
RsaNI	GTAC	3 cut(s)	74, 133, 175
Rsr2I	CGGWCCG	1 cut(s)	128
RsrII	CGGWCCG	1 cut(s)	128
SacI	GAGCTC	1 cut(s)	280
SatI	GCNGC	3 cut(s)	6, 42, 355
Sau3AI	GATC	3 cut(s)	115, 195, 225
Sau96I	GGNCC	4 cut(s)	89, 104, 128, 189
ScrFI	CCNGG	3 cut(s)	71, 140, 223
SduI	GDGCHC	1 cut(s)	280
SetI	ASST	4 cut(s)	138, 163, 185, 280
SfaNI	GCATC	1 cut(s)	254
SinI	GGWCC	3 cut(s)	89, 128, 189
SsiI	CCGC	4 cut(s)	5, 42, 186, 354
SstI	GAGCTC	1 cut(s)	280
StyD4I	CCNGG	3 cut(s)	69, 138, 221
TaaI	ACNGT	1 cut(s)	319
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	4 cut(s)	17, 27, 63, 201
TauI	GCSGC	3 cut(s)	8, 44, 357
TfiI	GAWTC	2 cut(s)	14, 60
TscAI	CASTG	2 cut(s)	212, 324
TspGWI	ACGGA	3 cut(s)	74, 108, 120
TspRI	CASTG	2 cut(s)	212, 324
VpaK11BI	GGWCC	3 cut(s)	89, 128, 189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.