Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003925

Physical Location & Seq

Genomic Coordinates Forward (+)

18779029 .. 18781305

Gene Structure 2277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g22890.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGTCAACCCAGGAACCCAGCACCACCGACTCGGACCTCTCCGCCTCGTTTACAACCATCACATTCGACCGCCCACTCCCCTTGCTCCGCGGTCCGGTCCGGGCCGCCCCACCCGACGACCCGTCGTCCGGCCCGTACGTCCTGGCGTTCCGCGACCCGAAAGCCTGGGCCCGCGCGTACAGCGCGTGCGAGGTGAAGATCATCCACCAGTGCGAGGGCGGGTCGAGAATCGGGTGCGCAATAAGCGCAGCGAGCAAGTGTAAGCCGCCGTGGTGGCGGTTCCTGATTGGCGGGAAAGCGCCGGACTTGAAGGAGAGGGCGGAGTGCGAGGAGAGAGAGACGGAGGGGTGTGTGGTGGCGGCGAAGGAGAAGTGCGTTGGGTTTGCGAGGGACAAGTGTGTGGGGCCCTTTAGGGAGGCTAGGGTTTGTGGGGTGAGTAAGAAGCAGGCGGAGGAGATGGTGGGGTGGGTGAGTGTGATGGGTAAAAGTAGGTGGGTGGGTTTGATTGGGTTGGAGAAATGTGGGTTTGGGGCGACGAATTGTAGGGCGGGTGAGCTGGTTGGGTATTCCGGCGAGGTTGATCGGGTTTTAGGGGGCGGGACGGAGACTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

205

Amino Acids

21.91

Weight (kDa)

7.98

Isoelectric Point (pI)

32.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63390
fragaria_vesca	FvH4_2g22890 FvH4_2g22890 FvH4_2g22890
malus_domestica	MD03G1257200.v1.1 MD11G1277900.v1.1
prunus_persica	Prupe.1G517900_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1 Prupe.8G234100_v2.0.a1
pyrus_communis	pycom03g20390 pycom11g24570
rosa_chinensis	RchiOBHm_Chr6g0289821
rosa_laevigata	RLG00000012265
rosa_multiflora	Rmu_co8501753.1_g000001 Rmu_sc0000062.1_g000022 Rmu_sc0000616.1_g000017 Rmu_sc0002638.1_g000015 Rmu_sc0011921.1_g000014
rosa_roxburghii	Rroxscaffold_7G00177530
rosa_rugosa	Rorug06G0207200
rosa_samantha	Rh1CG355400 Rh3BG119600 Rh4CG249200 Rh6AG318700 Rh6BG325900 Rh6DG317200
rosa_wichuraiana	Rw2G018340 Rw4G013870 Rw5G021300 Rw6G027490 Rw7G035100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	238
AccII	CGCG	5 cut(s)	90, 153, 174, 176, 185
AfaI	GTAC	2 cut(s)	137, 179
AfiI	CCNNNNNNNGG	3 cut(s)	94, 128, 214
AgsI	TTSAA	1 cut(s)	310
AhdI	GACNNNNNGTC	2 cut(s)	121, 124
AjnI	CCWGG	3 cut(s)	9, 141, 164
AluBI	AGCT	1 cut(s)	556
AluI	AGCT	1 cut(s)	556
Alw26I	GTCTC	2 cut(s)	332, 599
AoxI	GGCC	4 cut(s)	102, 130, 168, 404
ApaI	GGGCCC	2 cut(s)	172, 408
ApeKI	GCWGC	1 cut(s)	248
AspLEI	GCGC	5 cut(s)	176, 185, 239, 248, 301
AspS9I	GGNCC	9 cut(s)	34, 92, 97, 102, 131, 168, 169, 404, 405
AsuC2I	CCSGG	1 cut(s)	101
AsuHPI	GGTGA	4 cut(s)	205, 445, 481, 563
AvaII	GGWCC	3 cut(s)	34, 92, 97
BaeGI	GKGCMC	2 cut(s)	172, 408
BanII	GRGCYC	2 cut(s)	172, 408
BbvI	GCAGC	1 cut(s)	260
BccI	CCATC	3 cut(s)	65, 451, 472
BceAI	ACGGC	1 cut(s)	253
BciT130I	CCWGG	3 cut(s)	11, 143, 166
BcnI	CCSGG	1 cut(s)	101
BcoDI	GTCTC	2 cut(s)	332, 599
BfaI	CTAG	1 cut(s)	420
BfoI	RGCGCY	1 cut(s)	302
BglI	GCCNNNNNGGC	1 cut(s)	274
BisI	GCNGC	4 cut(s)	105, 249, 266, 360
BlsI	GCNGC	4 cut(s)	106, 250, 267, 361
Bme1390I	CCNGG	4 cut(s)	11, 101, 143, 166
Bme18I	GGWCC	3 cut(s)	34, 92, 97
BmeRI	GACNNNNNGTC	2 cut(s)	121, 124
BmgT120I	GGNCC	9 cut(s)	34, 92, 97, 102, 131, 168, 169, 404, 405
BmiI	GGNNCC	5 cut(s)	15, 170, 281, 405, 406
BmrFI	CCNGG	4 cut(s)	11, 101, 143, 166
BpuMI	CCSGG	1 cut(s)	101
BsaJI	CCNNGG	4 cut(s)	9, 88, 165, 269
BsaWI	WCCGGW	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 128, 214
Bse1I	ACTGG	1 cut(s)	208
BseBI	CCWGG	3 cut(s)	11, 143, 166
BseDI	CCNNGG	4 cut(s)	9, 88, 165, 269
BseGI	GGATG	1 cut(s)	201
BseLI	CCNNNNNNNGG	3 cut(s)	94, 128, 214
BseNI	ACTGG	1 cut(s)	208
BseRI	GAGGAG	2 cut(s)	344, 467
BseSI	GKGCMC	2 cut(s)	172, 408
BseXI	GCAGC	1 cut(s)	260
BseYI	CCCAGC	1 cut(s)	17
Bsh1236I	CGCG	5 cut(s)	90, 153, 174, 176, 185
Bsh1285I	CGRYCG	1 cut(s)	70
BshFI	GGCC	4 cut(s)	104, 132, 170, 406
BsiEI	CGRYCG	1 cut(s)	70
BsiSI	CCGG	5 cut(s)	95, 100, 129, 302, 570
BsiWI	CGTACG	1 cut(s)	135
BslFI	GGGAC	1 cut(s)	404
BslI	CCNNNNNNNGG	3 cut(s)	94, 128, 214
BsmAI	GTCTC	2 cut(s)	332, 599
BsmBI	CGTCTC	1 cut(s)	332
BsmFI	GGGAC	1 cut(s)	404
BsnI	GGCC	4 cut(s)	104, 132, 170, 406
Bsp120I	GGGCCC	2 cut(s)	168, 404
Bsp1286I	GDGCHC	2 cut(s)	172, 408
Bsp143I	GATC	2 cut(s)	198, 580
BspANI	GGCC	4 cut(s)	104, 132, 170, 406
BspFNI	CGCG	5 cut(s)	90, 153, 174, 176, 185
BspLI	GGNNCC	5 cut(s)	15, 170, 281, 405, 406
BsrI	ACTGG	1 cut(s)	208
BssECI	CCNNGG	4 cut(s)	9, 88, 165, 269
BssMI	GATC	2 cut(s)	198, 580
Bst2UI	CCWGG	3 cut(s)	11, 143, 166
Bst4CI	ACNGT	1 cut(s)	610
BstC8I	GCNNGC	4 cut(s)	172, 187, 253, 447
BstDSI	CCRYGG	2 cut(s)	88, 269
BstF5I	GGATG	1 cut(s)	201
BstFNI	CGCG	5 cut(s)	90, 153, 174, 176, 185
BstH2I	RGCGCY	1 cut(s)	302
BstHHI	GCGC	5 cut(s)	176, 185, 239, 248, 301
BstKTI	GATC	2 cut(s)	201, 583
BstMAI	GTCTC	2 cut(s)	332, 599
BstMBI	GATC	2 cut(s)	198, 580
BstMCI	CGRYCG	1 cut(s)	70
BstMWI	GCNNNNNNNGC	6 cut(s)	180, 182, 243, 245, 252, 274
BstNI	CCWGG	3 cut(s)	11, 143, 166
BstSCI	CCNGG	4 cut(s)	9, 99, 141, 164
BstSLI	GKGCMC	2 cut(s)	172, 408
BstUI	CGCG	5 cut(s)	90, 153, 174, 176, 185
BstV1I	GCAGC	1 cut(s)	260
BsuRI	GGCC	4 cut(s)	104, 132, 170, 406
BtgI	CCRYGG	2 cut(s)	88, 269
BtsCI	GGATG	1 cut(s)	201
BtsIMutI	CAGTG	1 cut(s)	215
Cac8I	GCNNGC	4 cut(s)	172, 187, 253, 447
CfoI	GCGC	5 cut(s)	176, 185, 239, 248, 301
Cfr13I	GGNCC	9 cut(s)	34, 92, 97, 102, 131, 168, 169, 404, 405
Cfr42I	CCGCGG	1 cut(s)	91
CpoI	CGGWCCG	2 cut(s)	92, 97
Csp6I	GTAC	2 cut(s)	136, 178
CspCI	CAANNNNNGTGG	2 cut(s)	63, 98
CspI	CGGWCCG	2 cut(s)	92, 97
CviJI	RGCY	8 cut(s)	104, 132, 164, 170, 265, 406, 419, 556
CviKI_1	RGCY	8 cut(s)	104, 132, 164, 170, 265, 406, 419, 556
CviQI	GTAC	2 cut(s)	136, 178
DpnI	GATC	2 cut(s)	200, 582
DpnII	GATC	2 cut(s)	198, 580
DriI	GACNNNNNGTC	2 cut(s)	121, 124
Eam1105I	GACNNNNNGTC	2 cut(s)	121, 124
EciI	GGCGGA	3 cut(s)	31, 335, 464
Eco24I	GRGCYC	2 cut(s)	172, 408
Eco47I	GGWCC	3 cut(s)	34, 92, 97
EcoO109I	RGGNCCY	2 cut(s)	404, 405
EcoRII	CCWGG	3 cut(s)	9, 141, 164
EcoT38I	GRGCYC	2 cut(s)	172, 408
Esp3I	CGTCTC	1 cut(s)	332
FaiI	YATR	1 cut(s)	613
FaqI	GGGAC	1 cut(s)	404
FauI	CCCGC	5 cut(s)	179, 212, 284, 541, 590
Fnu4HI	GCNGC	4 cut(s)	105, 249, 266, 360
FokI	GGATG	1 cut(s)	188
FriOI	GRGCYC	2 cut(s)	172, 408
Fsp4HI	GCNGC	4 cut(s)	105, 249, 266, 360
FspBI	CTAG	1 cut(s)	420
FspI	TGCGCA	1 cut(s)	238
GlaI	GCGC	5 cut(s)	175, 184, 238, 247, 300
GluI	GCNGC	4 cut(s)	105, 249, 266, 360
GsaI	CCCAGC	1 cut(s)	21
HaeII	RGCGCY	1 cut(s)	302
HaeIII	GGCC	4 cut(s)	104, 132, 170, 406
HapII	CCGG	5 cut(s)	95, 100, 129, 302, 570
HhaI	GCGC	5 cut(s)	176, 185, 239, 248, 301
Hin6I	GCGC	5 cut(s)	174, 183, 237, 246, 299
HinP1I	GCGC	5 cut(s)	174, 183, 237, 246, 299
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	2 cut(s)	29, 228
HpaII	CCGG	5 cut(s)	95, 100, 129, 302, 570
HphI	GGTGA	4 cut(s)	205, 445, 481, 563
Hpy166II	GTNNAC	2 cut(s)	6, 51
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	2 cut(s)	225, 283
Hpy8I	GTNNAC	2 cut(s)	6, 51
Hpy99I	CGWCG	3 cut(s)	119, 127, 538
HpyAV	CCTTC	2 cut(s)	304, 358
HpyCH4III	ACNGT	1 cut(s)	610
HpyCH4IV	ACGT	1 cut(s)	138
HpyF10VI	GCNNNNNNNGC	6 cut(s)	180, 182, 243, 245, 252, 274
HpySE526I	ACGT	1 cut(s)	138
HspAI	GCGC	5 cut(s)	174, 183, 237, 246, 299
KspI	CCGCGG	1 cut(s)	91
Kzo9I	GATC	2 cut(s)	198, 580
LmnI	GCTCC	1 cut(s)	90
Lsp1109I	GCAGC	1 cut(s)	260
MaeI	CTAG	1 cut(s)	420
MaeII	ACGT	1 cut(s)	138
MalI	GATC	2 cut(s)	200, 582
MboI	GATC	2 cut(s)	198, 580
MboII	GAAGA	1 cut(s)	208
MhlI	GDGCHC	2 cut(s)	172, 408
MluCI	AATT	1 cut(s)	538
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	1 cut(s)	492
MspA1I	CMGCKG	1 cut(s)	90
MspI	CCGG	5 cut(s)	95, 100, 129, 302, 570
MspR9I	CCNGG	4 cut(s)	11, 101, 143, 166
MvaI	CCWGG	3 cut(s)	11, 143, 166
MvnI	CGCG	5 cut(s)	90, 153, 174, 176, 185
MwoI	GCNNNNNNNGC	6 cut(s)	180, 182, 243, 245, 252, 274
NciI	CCSGG	1 cut(s)	101
NdeII	GATC	2 cut(s)	198, 580
NlaIV	GGNNCC	5 cut(s)	15, 170, 281, 405, 406
NsbI	TGCGCA	1 cut(s)	238
PcsI	WCGNNNNNNNCGW	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	228
Pfl23II	CGTACG	1 cut(s)	135
PkrI	GCNGC	4 cut(s)	106, 250, 267, 361
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
Psp6I	CCWGG	3 cut(s)	9, 141, 164
PspFI	CCCAGC	1 cut(s)	17
PspGI	CCWGG	3 cut(s)	9, 141, 164
PspLI	CGTACG	1 cut(s)	135
PspN4I	GGNNCC	5 cut(s)	15, 170, 281, 405, 406
PspOMI	GGGCCC	2 cut(s)	168, 404
PspPI	GGNCC	9 cut(s)	34, 92, 97, 102, 131, 168, 169, 404, 405
RsaI	GTAC	2 cut(s)	137, 179
RsaNI	GTAC	2 cut(s)	136, 178
Rsr2I	CGGWCCG	2 cut(s)	92, 97
RsrII	CGGWCCG	2 cut(s)	92, 97
SacII	CCGCGG	1 cut(s)	91
SatI	GCNGC	4 cut(s)	105, 249, 266, 360
Sau3AI	GATC	2 cut(s)	198, 580
Sau96I	GGNCC	9 cut(s)	34, 92, 97, 102, 131, 168, 169, 404, 405
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	4 cut(s)	11, 101, 143, 166
SduI	GDGCHC	2 cut(s)	172, 408
SetI	ASST	6 cut(s)	39, 141, 195, 494, 558, 579
Sfr303I	CCGCGG	1 cut(s)	91
SgrBI	CCGCGG	1 cut(s)	91
SinI	GGWCC	3 cut(s)	34, 92, 97
Sse9I	AATT	1 cut(s)	538
SspMI	CTAG	1 cut(s)	420
StyD4I	CCNGG	4 cut(s)	9, 99, 141, 164
TaaI	ACNGT	1 cut(s)	610
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	2 cut(s)	66, 224
TasI	AATT	1 cut(s)	538
TauI	GCSGC	3 cut(s)	107, 268, 362
TfiI	GAWTC	1 cut(s)	228
TscAI	CASTG	1 cut(s)	215
TseI	GCWGC	1 cut(s)	248
TspGWI	ACGGA	1 cut(s)	356
TspRI	CASTG	1 cut(s)	215
VpaK11BI	GGWCC	3 cut(s)	34, 92, 97
XspI	CTAG	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.