Rh1CG355400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0003925
Physical Location & Seq
Reverse (-)
63026522 .. 63026887
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG355400.1

Sequence Viewer

Length: 366 bp
ATGGATGCCACTGTCTCCCCAGCCCCAATCCCCGACCCGAACCCGTCGTCCGGCCCATACGTGCTGGCATTCCGAGACCCGAAAACCTGCGTCAAAGCCTACAGAGAGTGCGAGTCCAATATCCTACACCAATGCGAGGTCGGGTCGAGAATCGGGTGCGCCATCATTGCATCGAGCAAGTGTAAGCCCCCGTGGTGGCGGTTTCTGATTGGGCAAAAAGCACCGAACTTGAAGCAGAGGACGGAGTGCGAGGAGAGAGAGACGGAGGGGTGTTTGGCTCCGAATTGTAGGGCGAGTGGGCTGGTTGGTTGTTCCGGTGAGGTTGATCGGGTTTTAGGTGGTGGCAGTGAGACTTTGAAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.05

Weight (kDa)

7.48

Isoelectric Point (pI)

43.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 95
AciI CCGC 1 cut(s) 199
AfiI CCNNNNNNNGG 3 cut(s) 50, 136, 195
AgsI TTSAA 2 cut(s) 232, 358
AloI GAACNNNNNNTCC 2 cut(s) 32, 64
Alw26I GTCTC 4 cut(s) 19, 69, 254, 344
AoxI GGCC 1 cut(s) 52
ArsI GACNNNNNNTTYG 2 cut(s) 32, 64
AspLEI GCGC 1 cut(s) 161
AspS9I GGNCC 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 329
BccI CCATC 1 cut(s) 170
BcoDI GTCTC 4 cut(s) 19, 69, 254, 344
BfmI CTRYAG 1 cut(s) 100
BfuAI ACCTGC 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 1 cut(s) 279
BmsI GCATC 1 cut(s) 179
BsaAI YACGTR 1 cut(s) 61
BsaI GGTCTC 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 191
BsaWI WCCGGW 1 cut(s) 314
Bsc4I CCNNNNNNNGG 3 cut(s) 50, 136, 195
Bse3DI GCAATG 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 191
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 3 cut(s) 50, 136, 195
BseMI GCAATG 1 cut(s) 165
BseRI GAGGAG 1 cut(s) 266
BseYI CCCAGC 1 cut(s) 19
BshFI GGCC 1 cut(s) 54
BsiSI CCGG 2 cut(s) 51, 315
BslI CCNNNNNNNGG 3 cut(s) 50, 136, 195
BsmAI GTCTC 4 cut(s) 19, 69, 254, 344
BsmBI CGTCTC 1 cut(s) 254
BsmI GAATGC 1 cut(s) 68
BsnI GGCC 1 cut(s) 54
Bso31I GGTCTC 1 cut(s) 69
Bsp143I GATC 1 cut(s) 325
BspACI CCGC 1 cut(s) 199
BspANI GGCC 1 cut(s) 54
BspLI GGNNCC 1 cut(s) 279
BspMI ACCTGC 1 cut(s) 95
BspTNI GGTCTC 1 cut(s) 69
BsrDI GCAATG 1 cut(s) 165
BssECI CCNNGG 1 cut(s) 191
BssMI GATC 1 cut(s) 325
Bst4CI ACNGT 1 cut(s) 13
BstBAI YACGTR 1 cut(s) 61
BstC8I GCNNGC 1 cut(s) 66
BstDSI CCRYGG 1 cut(s) 191
BstF5I GGATG 1 cut(s) 10
BstHHI GCGC 1 cut(s) 161
BstKTI GATC 1 cut(s) 328
BstMAI GTCTC 4 cut(s) 19, 69, 254, 344
BstMBI GATC 1 cut(s) 325
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstSFI CTRYAG 1 cut(s) 100
BsuRI GGCC 1 cut(s) 54
BtgI CCRYGG 1 cut(s) 191
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 352
BtsIMutI CAGTG 2 cut(s) 9, 352
BveI ACCTGC 1 cut(s) 95
Cac8I GCNNGC 1 cut(s) 66
CfoI GCGC 1 cut(s) 161
Cfr13I GGNCC 1 cut(s) 53
CseI GACGC 1 cut(s) 79
CviJI RGCY 6 cut(s) 23, 54, 98, 187, 278, 301
CviKI_1 RGCY 6 cut(s) 23, 54, 98, 187, 278, 301
DpnI GATC 1 cut(s) 327
DpnII GATC 1 cut(s) 325
Eco31I GGTCTC 1 cut(s) 69
Esp3I CGTCTC 1 cut(s) 254
FaiI YATR 1 cut(s) 58
FokI GGATG 1 cut(s) 17
GlaI GCGC 1 cut(s) 160
GsaI CCCAGC 1 cut(s) 23
HaeIII GGCC 1 cut(s) 54
HapII CCGG 2 cut(s) 51, 315
HgaI GACGC 1 cut(s) 79
HhaI GCGC 1 cut(s) 161
Hin6I GCGC 1 cut(s) 159
HinP1I GCGC 1 cut(s) 159
HinfI GANTC 2 cut(s) 113, 150
HpaII CCGG 2 cut(s) 51, 315
HphI GGTGA 1 cut(s) 329
Hpy188I TCNGA 3 cut(s) 74, 207, 282
Hpy188III TCNNGA 1 cut(s) 147
Hpy99I CGWCG 1 cut(s) 49
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 1 cut(s) 170
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
HpySE526I ACGT 1 cut(s) 60
HspAI GCGC 1 cut(s) 159
Kzo9I GATC 1 cut(s) 325
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 6 cut(s) 33, 50, 64, 100, 287, 328
LweI GCATC 1 cut(s) 179
MaeII ACGT 1 cut(s) 60
MalI GATC 1 cut(s) 327
MboI GATC 1 cut(s) 325
MluCI AATT 1 cut(s) 283
MlyI GAGTC 1 cut(s) 122
MnlI CCTC 5 cut(s) 130, 231, 244, 259, 313
MspI CCGG 2 cut(s) 51, 315
Mva1269I GAATGC 1 cut(s) 68
MwoI GCNNNNNNNGC 1 cut(s) 167
NdeII GATC 1 cut(s) 325
NlaIV GGNNCC 1 cut(s) 279
PctI GAATGC 1 cut(s) 68
PfeI GAWTC 1 cut(s) 150
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
Ppu21I YACGTR 1 cut(s) 61
PspFI CCCAGC 1 cut(s) 19
PspN4I GGNNCC 1 cut(s) 279
PspPI GGNCC 1 cut(s) 53
Sau3AI GATC 1 cut(s) 325
Sau96I GGNCC 1 cut(s) 53
SchI GAGTC 1 cut(s) 122
SetI ASST 5 cut(s) 63, 89, 141, 324, 340
SfaNI GCATC 1 cut(s) 179
SfcI CTRYAG 1 cut(s) 100
Sse9I AATT 1 cut(s) 283
SsiI CCGC 1 cut(s) 199
TaaI ACNGT 1 cut(s) 13
TaiI ACGT 1 cut(s) 63
TaqI TCGA 2 cut(s) 146, 173
TasI AATT 1 cut(s) 283
TfiI GAWTC 1 cut(s) 150
TscAI CASTG 2 cut(s) 16, 352
TspGWI ACGGA 2 cut(s) 257, 278
TspRI CASTG 2 cut(s) 16, 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.