RchiOBHm_Chr6g0289821

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0003925
Physical Location & Seq
Forward (+)
52923314 .. 52924318
1005 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26001

Sequence Viewer

Length: 615 bp
ATGGTGACCCCGGAACCCAGCAACATCGACGAGGAGGAGCTCTCCGCCGCCTCCACGACCATCTTATTCGACCGCCCCGTCCCCTTGCTCCGCGGGCCGGTCCGGGCCGGCCCGCCCGACGACCCGTCGTCCGGCCCGTACGTGCTGGCATTCCGCGACGCGAAAACCTGGGCCAACGCCTACAGAGCGTGCGAGTCGAAGATCCTACACCAGTGCGAGACCGGGTCGAGAATCGGGTGCGCCCTCAGCGCATCGAGCAAGTGTAAGCCGCCGTGGTGGCGGTTTCTGATTGGGCAGAAAGCGCCGGAGTTGAAACAGAGGGCGGAGTGCGAGGAGAGAGAGACGGAGGGGTGTTTGGCTACGGCGAAGGAGAAGTGCGTTGGGTTTGCGAGAGACAAGTGCTTGGAGCCGTTTAGGGAGGCCAGGGTTTGTGGGGTGAGTAAGAAGCAGGCGGAGAAGATGGTGTGCTGGGCGAGTGTGATCGATAAAAGTAGTACGTGGGTGAGTTTGATTGGGTTGGAGAATTGTGGGTTTGGGGCGACGAATTGTAGGGCGGTTGAGCTGGTTGGGTATGCCGGTGAGGTTGATCGGGTTTTAGGTGGTGGCAGTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

22.19

Weight (kDa)

6.03

Isoelectric Point (pI)

40.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 77
AccII CGCG 3 cut(s) 93, 156, 161
AclWI GGATC 1 cut(s) 196
AfaI GTAC 2 cut(s) 140, 496
AfiI CCNNNNNNNGG 2 cut(s) 97, 131
AgsI TTSAA 1 cut(s) 313
AhdI GACNNNNNGTC 2 cut(s) 124, 127
AjnI CCWGG 2 cut(s) 167, 422
AluBI AGCT 2 cut(s) 40, 562
AluI AGCT 2 cut(s) 40, 562
Alw21I GWGCWC 1 cut(s) 42
Alw26I GTCTC 3 cut(s) 212, 335, 387
AlwI GGATC 1 cut(s) 196
AoxI GGCC 6 cut(s) 95, 105, 109, 133, 171, 420
AspLEI GCGC 3 cut(s) 242, 251, 304
AspS9I GGNCC 6 cut(s) 95, 100, 105, 110, 134, 171
AsuC2I CCSGG 3 cut(s) 11, 104, 223
AsuHPI GGTGA 4 cut(s) 16, 448, 514, 590
AvaII GGWCC 1 cut(s) 100
BanII GRGCYC 1 cut(s) 42
Bbv12I GWGCWC 1 cut(s) 42
BbvCI CCTCAGC 1 cut(s) 245
BccI CCATC 2 cut(s) 68, 454
BceAI ACGGC 3 cut(s) 256, 378, 394
BciT130I CCWGG 2 cut(s) 169, 424
BcnI CCSGG 3 cut(s) 11, 104, 223
BcoDI GTCTC 3 cut(s) 212, 335, 387
BfmI CTRYAG 1 cut(s) 181
BfoI RGCGCY 1 cut(s) 305
BglI GCCNNNNNGGC 1 cut(s) 277
BisI GCNGC 2 cut(s) 48, 269
BlsI GCNGC 2 cut(s) 49, 270
Bme1390I CCNGG 5 cut(s) 11, 104, 169, 223, 424
Bme18I GGWCC 1 cut(s) 100
BmeRI GACNNNNNGTC 2 cut(s) 124, 127
BmgT120I GGNCC 6 cut(s) 95, 100, 105, 110, 134, 171
BmiI GGNNCC 2 cut(s) 15, 408
BmrFI CCNGG 5 cut(s) 11, 104, 169, 223, 424
BmsI GCATC 1 cut(s) 260
BplI GAGNNNNNCTC 2 cut(s) 26, 58
Bpu10I CCTNAGC 1 cut(s) 245
BpuMI CCSGG 3 cut(s) 11, 104, 223
Bsa29I ATCGAT 1 cut(s) 483
BsaAI YACGTR 2 cut(s) 142, 498
BsaI GGTCTC 1 cut(s) 212
BsaJI CCNNGG 5 cut(s) 9, 91, 168, 272, 423
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 131
Bse118I RCCGGY 3 cut(s) 97, 107, 575
Bse1I ACTGG 1 cut(s) 211
BseBI CCWGG 2 cut(s) 169, 424
BseCI ATCGAT 1 cut(s) 483
BseDI CCNNGG 5 cut(s) 9, 91, 168, 272, 423
BseLI CCNNNNNNNGG 2 cut(s) 97, 131
BseMII CTCAG 1 cut(s) 259
BseNI ACTGG 1 cut(s) 211
BseRI GAGGAG 3 cut(s) 47, 50, 347
BseYI CCCAGC 2 cut(s) 17, 468
Bsh1236I CGCG 3 cut(s) 93, 156, 161
Bsh1285I CGRYCG 1 cut(s) 73
BshFI GGCC 6 cut(s) 97, 107, 111, 135, 173, 422
BshVI ATCGAT 1 cut(s) 483
BsiEI CGRYCG 1 cut(s) 73
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 8 cut(s) 11, 98, 103, 108, 132, 222, 305, 576
BsiWI CGTACG 1 cut(s) 138
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 2 cut(s) 97, 131
BsmAI GTCTC 3 cut(s) 212, 335, 387
BsmBI CGTCTC 1 cut(s) 335
BsmFI GGGAC 1 cut(s) 65
BsmI GAATGC 1 cut(s) 149
BsnI GGCC 6 cut(s) 97, 107, 111, 135, 173, 422
Bso31I GGTCTC 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 3 cut(s) 201, 480, 586
BspANI GGCC 6 cut(s) 97, 107, 111, 135, 173, 422
BspCNI CTCAG 1 cut(s) 258
BspDI ATCGAT 1 cut(s) 483
BspFNI CGCG 3 cut(s) 93, 156, 161
BspLI GGNNCC 2 cut(s) 15, 408
BspPI GGATC 1 cut(s) 196
BspTNI GGTCTC 1 cut(s) 212
BsrFI RCCGGY 3 cut(s) 97, 107, 575
BsrI ACTGG 1 cut(s) 211
BssAI RCCGGY 3 cut(s) 97, 107, 575
BssECI CCNNGG 5 cut(s) 9, 91, 168, 272, 423
BssMI GATC 3 cut(s) 201, 480, 586
Bst2UI CCWGG 2 cut(s) 169, 424
BstBAI YACGTR 2 cut(s) 142, 498
BstC8I GCNNGC 6 cut(s) 95, 109, 113, 147, 190, 450
BstDEI CTNAG 1 cut(s) 245
BstDSI CCRYGG 2 cut(s) 91, 272
BstEII GGTNACC 1 cut(s) 4
BstFNI CGCG 3 cut(s) 93, 156, 161
BstH2I RGCGCY 1 cut(s) 305
BstHHI GCGC 3 cut(s) 242, 251, 304
BstKTI GATC 3 cut(s) 204, 483, 589
BstMAI GTCTC 3 cut(s) 212, 335, 387
BstMBI GATC 3 cut(s) 201, 480, 586
BstMCI CGRYCG 1 cut(s) 73
BstMWI GCNNNNNNNGC 7 cut(s) 94, 185, 246, 248, 255, 277, 301
BstNI CCWGG 2 cut(s) 169, 424
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 5 cut(s) 9, 102, 167, 221, 422
BstSFI CTRYAG 1 cut(s) 181
BstUI CGCG 3 cut(s) 93, 156, 161
BstX2I RGATCY 1 cut(s) 201
BstYI RGATCY 1 cut(s) 201
Bsu15I ATCGAT 1 cut(s) 483
BsuRI GGCC 6 cut(s) 97, 107, 111, 135, 173, 422
BsuTUI ATCGAT 1 cut(s) 483
BtgI CCRYGG 2 cut(s) 91, 272
BtsI GCAGTG 1 cut(s) 613
BtsIMutI CAGTG 2 cut(s) 218, 613
Cac8I GCNNGC 6 cut(s) 95, 109, 113, 147, 190, 450
CfoI GCGC 3 cut(s) 242, 251, 304
Cfr10I RCCGGY 3 cut(s) 97, 107, 575
Cfr13I GGNCC 6 cut(s) 95, 100, 105, 110, 134, 171
Cfr42I CCGCGG 1 cut(s) 94
ClaI ATCGAT 1 cut(s) 483
CpoI CGGWCCG 1 cut(s) 100
CseI GACGC 1 cut(s) 167
Csp6I GTAC 2 cut(s) 139, 495
CspI CGGWCCG 1 cut(s) 100
CviQI GTAC 2 cut(s) 139, 495
DdeI CTNAG 1 cut(s) 245
DpnI GATC 3 cut(s) 203, 482, 588
DpnII GATC 3 cut(s) 201, 480, 586
DrdI GACNNNNNNGTC 1 cut(s) 77
DriI GACNNNNNGTC 2 cut(s) 124, 127
DseDI GACNNNNNNGTC 1 cut(s) 77
Eam1105I GACNNNNNGTC 2 cut(s) 124, 127
EciI GGCGGA 3 cut(s) 34, 338, 467
Ecl136II GAGCTC 1 cut(s) 40
Eco24I GRGCYC 1 cut(s) 42
Eco31I GGTCTC 1 cut(s) 212
Eco47I GGWCC 1 cut(s) 100
Eco53kI GAGCTC 1 cut(s) 40
Eco91I GGTNACC 1 cut(s) 4
EcoICRI GAGCTC 1 cut(s) 40
EcoO65I GGTNACC 1 cut(s) 4
EcoRII CCWGG 2 cut(s) 167, 422
EcoT38I GRGCYC 1 cut(s) 42
Esp3I CGTCTC 1 cut(s) 335
FaiI YATR 1 cut(s) 573
FaqI GGGAC 1 cut(s) 65
FauI CCCGC 2 cut(s) 86, 120
Fnu4HI GCNGC 2 cut(s) 48, 269
FriOI GRGCYC 1 cut(s) 42
FseI GGCCGGCC 1 cut(s) 111
Fsp4HI GCNGC 2 cut(s) 48, 269
GlaI GCGC 3 cut(s) 241, 250, 303
GluI GCNGC 2 cut(s) 48, 269
GsaI CCCAGC 2 cut(s) 21, 472
HaeII RGCGCY 1 cut(s) 305
HaeIII GGCC 6 cut(s) 97, 107, 111, 135, 173, 422
HapII CCGG 8 cut(s) 11, 98, 103, 108, 132, 222, 305, 576
HgaI GACGC 1 cut(s) 167
HhaI GCGC 3 cut(s) 242, 251, 304
Hin6I GCGC 3 cut(s) 240, 249, 302
HinP1I GCGC 3 cut(s) 240, 249, 302
HinfI GANTC 2 cut(s) 194, 231
HpaII CCGG 8 cut(s) 11, 98, 103, 108, 132, 222, 305, 576
HphI GGTGA 4 cut(s) 16, 448, 514, 590
Hpy188I TCNGA 1 cut(s) 288
Hpy188III TCNNGA 1 cut(s) 228
Hpy99I CGWCG 5 cut(s) 32, 122, 130, 161, 544
HpyAV CCTTC 1 cut(s) 361
HpyCH4IV ACGT 2 cut(s) 141, 497
HpyF10VI GCNNNNNNNGC 7 cut(s) 94, 185, 246, 248, 255, 277, 301
HpyF3I CTNAG 1 cut(s) 245
HpySE526I ACGT 2 cut(s) 141, 497
HspAI GCGC 3 cut(s) 240, 249, 302
KroI GCCGGC 1 cut(s) 107
KroNI GCCGGC 1 cut(s) 109
KspI CCGCGG 1 cut(s) 94
Kzo9I GATC 3 cut(s) 201, 480, 586
LmnI GCTCC 3 cut(s) 37, 93, 406
LweI GCATC 1 cut(s) 260
MaeII ACGT 2 cut(s) 141, 497
MaeIII GTNAC 1 cut(s) 4
MalI GATC 3 cut(s) 203, 482, 588
MboI GATC 3 cut(s) 201, 480, 586
MboII GAAGA 2 cut(s) 211, 469
MflI RGATCY 1 cut(s) 201
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 2 cut(s) 523, 544
MlyI GAGTC 1 cut(s) 203
MmeI TCCRAC 1 cut(s) 498
MnlI CCTC 9 cut(s) 25, 28, 61, 254, 312, 325, 340, 412, 574
MroNI GCCGGC 1 cut(s) 107
MspA1I CMGCKG 1 cut(s) 93
MspI CCGG 8 cut(s) 11, 98, 103, 108, 132, 222, 305, 576
MspR9I CCNGG 5 cut(s) 11, 104, 169, 223, 424
Mva1269I GAATGC 1 cut(s) 149
MvaI CCWGG 2 cut(s) 169, 424
MvnI CGCG 3 cut(s) 93, 156, 161
MwoI GCNNNNNNNGC 7 cut(s) 94, 185, 246, 248, 255, 277, 301
NaeI GCCGGC 1 cut(s) 109
NciI CCSGG 3 cut(s) 11, 104, 223
NdeII GATC 3 cut(s) 201, 480, 586
NgoMIV GCCGGC 1 cut(s) 107
NlaIV GGNNCC 2 cut(s) 15, 408
NmuCI GTSAC 1 cut(s) 4
PcsI WCGNNNNNNNCGW 2 cut(s) 75, 134
PctI GAATGC 1 cut(s) 149
PdiI GCCGGC 1 cut(s) 109
PfeI GAWTC 1 cut(s) 231
Pfl23II CGTACG 1 cut(s) 138
PflFI GACNNNGTC 1 cut(s) 223
PkrI GCNGC 2 cut(s) 49, 270
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
Ppu21I YACGTR 2 cut(s) 142, 498
Psp124BI GAGCTC 1 cut(s) 42
Psp6I CCWGG 2 cut(s) 167, 422
PspEI GGTNACC 1 cut(s) 4
PspFI CCCAGC 2 cut(s) 17, 468
PspGI CCWGG 2 cut(s) 167, 422
PspLI CGTACG 1 cut(s) 138
PspN4I GGNNCC 2 cut(s) 15, 408
PspPI GGNCC 6 cut(s) 95, 100, 105, 110, 134, 171
PsuI RGATCY 1 cut(s) 201
PsyI GACNNNGTC 1 cut(s) 223
RigI GGCCGGCC 1 cut(s) 111
RsaI GTAC 2 cut(s) 140, 496
RsaNI GTAC 2 cut(s) 139, 495
Rsr2I CGGWCCG 1 cut(s) 100
RsrII CGGWCCG 1 cut(s) 100
SacI GAGCTC 1 cut(s) 42
SacII CCGCGG 1 cut(s) 94
SatI GCNGC 2 cut(s) 48, 269
Sau3AI GATC 3 cut(s) 201, 480, 586
Sau96I GGNCC 6 cut(s) 95, 100, 105, 110, 134, 171
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 5 cut(s) 11, 104, 169, 223, 424
SduI GDGCHC 1 cut(s) 42
SetI ASST 7 cut(s) 42, 144, 170, 500, 564, 585, 601
SfaNI GCATC 1 cut(s) 260
SfcI CTRYAG 1 cut(s) 181
Sfr303I CCGCGG 1 cut(s) 94
SgrBI CCGCGG 1 cut(s) 94
SinI GGWCC 1 cut(s) 100
Sse9I AATT 2 cut(s) 523, 544
SstI GAGCTC 1 cut(s) 42
StyD4I CCNGG 5 cut(s) 9, 102, 167, 221, 422
TaiI ACGT 2 cut(s) 144, 500
TaqI TCGA 6 cut(s) 27, 69, 197, 227, 254, 483
TasI AATT 2 cut(s) 523, 544
TauI GCSGC 2 cut(s) 50, 271
TfiI GAWTC 1 cut(s) 231
TscAI CASTG 2 cut(s) 218, 613
TseFI GTSAC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 4
TspGWI ACGGA 1 cut(s) 359
TspRI CASTG 2 cut(s) 218, 613
Tth111I GACNNNGTC 1 cut(s) 223
VpaK11BI GGWCC 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.