AT4G00310

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0003426
Physical Location & Seq
Forward (+)
133643 .. 135502
1860 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G00310.2

Sequence Viewer

Length: 909 bp
ATGAGGATTCGGAAGAACACGAAACTGTCATCGGTTCTTTTATCGACAGCAGGTTGCGGCGGAGAGAGACCGGACACGTATGTGTGTCACTTAAACCAGTCTCCATGGGATGTGATTCCTGTTTCTTCCTCCGGCGATTGCGAGTTAACTAACCTAGTCGACTCGTCGTGGTTCCTCCCTTTATCGTCTTCGTCTTCTTCTTCTTCTCCGCCTCTCATTCACAAGTTCATTGGAGAAGAAGATAGCTTCAATGGGAATGTGAGTTTGGGAGATTGTAATGACACTGCTCAAAGGTTTAATAGCTCCGTGAGTAGTAATCAAAGTCTAGTCTCCGTAGAGAAGCTTAATCTCAATGCGGCGGAGGAGGATAAGTACGCTATATCGCCGGAAGTTGAAGACCCAATGGATCAGAGCGATGACTATGACAAGAAATCCGAAGCTCTTGAGCCTAATTCGCCGGTCAAAACTTCCGGTGATGATGAAAAAGTGGTTGTAACAATTCCGACGGCGCCTAAACGTGGACGGCCACGTGGTTCGGGAAAGAAAGTTTCCGCTCCGGCATTGAAGAATCCGTACGAGTTTTACTATTACTCTGGTTTCGGGCCACGGTGGGGGAGAAAAAGAGGCGGCTCCGACGACGAGAAGATGGTTATAAACGATAGTAAAAAGAGTAGAAGTAGCGCTAGTAGCAGTAGTGACGAAGACGGTCATAAAACGGCGGCGTTTGGAGGTGGGAGTGTGAGTTTCGACGAGTTTGATTTTGTGGATGAGGATTATGACGTAATGGAACAAGATCAAGGAAGTGATCATGGGAGGAAGAAAAAGAATGAGAAGATGATAATGATGAAGAAGACGATGAAGAAAGGAAGGAAGCCCGTAAAGGAAAGGTCTTTGAAATCCCTCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WRC

Protein Analysis

302

Amino Acids

33.19

Weight (kDa)

5.74

Isoelectric Point (pI)

55.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 653
Acc36I ACCTGC 1 cut(s) 41
AccB1I GGYRCC 1 cut(s) 508
AccBSI CCGCTC 1 cut(s) 554
AccI GTMKAC 1 cut(s) 159
AciI CCGC 8 cut(s) 57, 60, 209, 356, 359, 552, 627, 719
AclWI GGATC 1 cut(s) 414
AcoI YGGCCR 1 cut(s) 524
AcvI CACGTG 1 cut(s) 530
AcyI GRCGYC 1 cut(s) 509
AfaI GTAC 2 cut(s) 374, 575
AfeI AGCGCT 1 cut(s) 682
AfiI CCNNNNNNNGG 2 cut(s) 518, 611
AflIII ACRYGT 1 cut(s) 75
AgsI TTSAA 4 cut(s) 250, 395, 565, 895
AjuI GAANNNNNNNTTGG 2 cut(s) 248, 280
AleI CACNNNNGTG 1 cut(s) 80
AluBI AGCT 4 cut(s) 246, 303, 343, 440
AluI AGCT 4 cut(s) 246, 303, 343, 440
Alw26I GTCTC 3 cut(s) 61, 105, 334
AlwI GGATC 1 cut(s) 414
Aor51HI AGCGCT 1 cut(s) 682
AoxI GGCC 2 cut(s) 524, 602
AspLEI GCGC 2 cut(s) 511, 683
AspS9I GGNCC 1 cut(s) 602
AsuHPI GGTGA 1 cut(s) 485
BanI GGYRCC 1 cut(s) 508
BarI GAAGNNNNNNTAC 2 cut(s) 557, 589
BbrPI CACGTG 1 cut(s) 530
BbsI GAAGAC 5 cut(s) 180, 186, 402, 708, 857
BccI CCATC 1 cut(s) 640
BceAI ACGGC 3 cut(s) 522, 539, 732
BclI TGATCA 1 cut(s) 805
BcoDI GTCTC 3 cut(s) 61, 105, 334
BfaI CTAG 3 cut(s) 155, 326, 684
BfoI RGCGCY 2 cut(s) 512, 684
BfuAI ACCTGC 1 cut(s) 41
BisI GCNGC 4 cut(s) 58, 357, 628, 720
BlsI GCNGC 4 cut(s) 59, 358, 629, 721
BmgT120I GGNCC 1 cut(s) 602
BmiI GGNNCC 3 cut(s) 173, 510, 631
BpiI GAAGAC 5 cut(s) 180, 186, 402, 708, 857
BpuEI CTTGAG 1 cut(s) 464
BsaAI YACGTR 2 cut(s) 78, 530
BsaHI GRCGYC 1 cut(s) 509
BsaI GGTCTC 1 cut(s) 61
BsaJI CCNNGG 2 cut(s) 104, 605
BsaWI WCCGGW 2 cut(s) 70, 470
BsaXI ACNNNNNCTCC 4 cut(s) 356, 386, 727, 757
Bsc4I CCNNNNNNNGG 2 cut(s) 518, 611
Bse118I RCCGGY 1 cut(s) 457
Bse1I ACTGG 1 cut(s) 97
BseDI CCNNGG 2 cut(s) 104, 605
BseGI GGATG 2 cut(s) 115, 772
BseLI CCNNNNNNNGG 2 cut(s) 518, 611
BseNI ACTGG 1 cut(s) 97
BseRI GAGGAG 1 cut(s) 377
BshFI GGCC 2 cut(s) 526, 604
BshNI GGYRCC 1 cut(s) 508
BsiSI CCGG 6 cut(s) 71, 132, 386, 458, 471, 557
BsiWI CGTACG 1 cut(s) 573
BslI CCNNNNNNNGG 2 cut(s) 518, 611
BsmAI GTCTC 3 cut(s) 61, 105, 334
BsnI GGCC 2 cut(s) 526, 604
Bso31I GGTCTC 1 cut(s) 61
Bsp143I GATC 3 cut(s) 406, 793, 805
Bsp19I CCATGG 1 cut(s) 104
BspACI CCGC 8 cut(s) 57, 60, 209, 356, 359, 552, 627, 719
BspANI GGCC 2 cut(s) 526, 604
BspLI GGNNCC 3 cut(s) 173, 510, 631
BspMI ACCTGC 1 cut(s) 41
BspPI GGATC 1 cut(s) 414
BspT107I GGYRCC 1 cut(s) 508
BspTNI GGTCTC 1 cut(s) 61
BsrBI CCGCTC 1 cut(s) 554
BsrFI RCCGGY 1 cut(s) 457
BsrI ACTGG 1 cut(s) 97
BssAI RCCGGY 1 cut(s) 457
BssECI CCNNGG 2 cut(s) 104, 605
BssMI GATC 3 cut(s) 406, 793, 805
BssNI GRCGYC 1 cut(s) 509
BssT1I CCWWGG 1 cut(s) 104
Bst4CI ACNGT 3 cut(s) 27, 609, 707
BstACI GRCGYC 1 cut(s) 509
BstBAI YACGTR 2 cut(s) 78, 530
BstDSI CCRYGG 2 cut(s) 104, 605
BstF5I GGATG 2 cut(s) 115, 772
BstH2I RGCGCY 2 cut(s) 512, 684
BstHHI GCGC 2 cut(s) 511, 683
BstKTI GATC 3 cut(s) 409, 796, 808
BstMAI GTCTC 3 cut(s) 61, 105, 334
BstMBI GATC 3 cut(s) 406, 793, 805
BstMWI GCNNNNNNNGC 2 cut(s) 454, 687
BstV2I GAAGAC 5 cut(s) 180, 186, 402, 708, 857
BsuRI GGCC 2 cut(s) 526, 604
BtgI CCRYGG 2 cut(s) 104, 605
BtgZI GCGATG 1 cut(s) 429
BtsCI GGATG 2 cut(s) 115, 772
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 282
BveI ACCTGC 1 cut(s) 41
CfoI GCGC 2 cut(s) 511, 683
Cfr10I RCCGGY 1 cut(s) 457
Cfr13I GGNCC 1 cut(s) 602
Csp6I GTAC 2 cut(s) 373, 574
CviAII CATG 3 cut(s) 105, 809, 904
CviJI RGCY 9 cut(s) 246, 303, 343, 440, 448, 526, 604, 630, 874
CviKI_1 RGCY 9 cut(s) 246, 303, 343, 440, 448, 526, 604, 630, 874
CviQI GTAC 2 cut(s) 373, 574
DinI GGCGCC 1 cut(s) 510
DpnI GATC 3 cut(s) 408, 795, 807
DpnII GATC 3 cut(s) 406, 793, 805
EaeI YGGCCR 1 cut(s) 524
EciI GGCGGA 3 cut(s) 75, 198, 374
Eco130I CCWWGG 1 cut(s) 104
Eco31I GGTCTC 1 cut(s) 61
Eco47III AGCGCT 1 cut(s) 682
Eco72I CACGTG 1 cut(s) 530
EcoT14I CCWWGG 1 cut(s) 104
EgeI GGCGCC 1 cut(s) 510
EheI GGCGCC 1 cut(s) 510
ErhI CCWWGG 1 cut(s) 104
FaeI CATG 3 cut(s) 108, 812, 907
FaiI YATR 9 cut(s) 81, 106, 380, 423, 653, 711, 777, 810, 905
FatI CATG 3 cut(s) 104, 808, 903
FbaI TGATCA 1 cut(s) 805
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 4 cut(s) 58, 357, 628, 720
FokI GGATG 2 cut(s) 122, 779
Fsp4HI GCNGC 4 cut(s) 58, 357, 628, 720
FspBI CTAG 3 cut(s) 155, 326, 684
GlaI GCGC 2 cut(s) 510, 682
GluI GCNGC 4 cut(s) 58, 357, 628, 720
HaeII RGCGCY 2 cut(s) 512, 684
HaeIII GGCC 2 cut(s) 526, 604
HapII CCGG 6 cut(s) 71, 132, 386, 458, 471, 557
HhaI GCGC 2 cut(s) 511, 683
Hin1I GRCGYC 1 cut(s) 509
Hin1II CATG 3 cut(s) 108, 812, 907
Hin6I GCGC 2 cut(s) 509, 681
HinP1I GCGC 2 cut(s) 509, 681
HincII GTYRAC 2 cut(s) 147, 160
HindII GTYRAC 2 cut(s) 147, 160
HindIII AAGCTT 1 cut(s) 341
HinfI GANTC 4 cut(s) 7, 115, 161, 568
HpaI GTTAAC 1 cut(s) 147
HpaII CCGG 6 cut(s) 71, 132, 386, 458, 471, 557
HphI GGTGA 1 cut(s) 485
Hpy166II GTNNAC 3 cut(s) 147, 160, 521
Hpy188I TCNGA 5 cut(s) 12, 411, 436, 504, 634
Hpy188III TCNNGA 2 cut(s) 443, 537
Hpy8I GTNNAC 3 cut(s) 147, 160, 521
Hpy99I CGWCG 5 cut(s) 169, 508, 638, 641, 752
HpyAV CCTTC 1 cut(s) 861
HpyCH4III ACNGT 3 cut(s) 27, 609, 707
HpyCH4IV ACGT 4 cut(s) 77, 517, 529, 780
HpyF10VI GCNNNNNNNGC 2 cut(s) 454, 687
HpySE526I ACGT 4 cut(s) 77, 517, 529, 780
Hsp92I GRCGYC 1 cut(s) 509
Hsp92II CATG 3 cut(s) 108, 812, 907
HspAI GCGC 2 cut(s) 509, 681
KasI GGCGCC 1 cut(s) 508
Ksp22I TGATCA 1 cut(s) 805
KspAI GTTAAC 1 cut(s) 147
Kzo9I GATC 3 cut(s) 406, 793, 805
LmnI GCTCC 3 cut(s) 308, 559, 635
MaeI CTAG 3 cut(s) 155, 326, 684
MaeII ACGT 4 cut(s) 77, 517, 529, 780
MaeIII GTNAC 3 cut(s) 86, 493, 695
MalI GATC 3 cut(s) 408, 795, 807
MbiI CCGCTC 1 cut(s) 554
MboI GATC 3 cut(s) 406, 793, 805
MluCI AATT 2 cut(s) 451, 498
Mly113I GGCGCC 1 cut(s) 509
MlyI GAGTC 1 cut(s) 155
MmeI TCCRAC 2 cut(s) 527, 657
MnlI CCTC 9 cut(s) 139, 185, 222, 355, 358, 617, 722, 763, 807
MseI TTAA 4 cut(s) 92, 146, 297, 345
MslI CAYNNNNRTG 1 cut(s) 80
MspI CCGG 6 cut(s) 71, 132, 386, 458, 471, 557
MwoI GCNNNNNNNGC 2 cut(s) 454, 687
NarI GGCGCC 1 cut(s) 509
NcoI CCATGG 1 cut(s) 104
NdeII GATC 3 cut(s) 406, 793, 805
NlaIII CATG 3 cut(s) 108, 812, 907
NlaIV GGNNCC 3 cut(s) 173, 510, 631
NmuCI GTSAC 2 cut(s) 86, 695
OliI CACNNNNGTG 1 cut(s) 80
PfeI GAWTC 3 cut(s) 7, 115, 568
Pfl23II CGTACG 1 cut(s) 573
PkrI GCNGC 4 cut(s) 59, 358, 629, 721
PleI GAGTC 1 cut(s) 155
PluTI GGCGCC 1 cut(s) 512
PmaCI CACGTG 1 cut(s) 530
PmlI CACGTG 1 cut(s) 530
PpsI GAGTC 1 cut(s) 155
Ppu21I YACGTR 2 cut(s) 78, 530
PsiI TTATAA 1 cut(s) 653
PspCI CACGTG 1 cut(s) 530
PspLI CGTACG 1 cut(s) 573
PspN4I GGNNCC 3 cut(s) 173, 510, 631
PspPI GGNCC 1 cut(s) 602
RsaI GTAC 2 cut(s) 374, 575
RsaNI GTAC 2 cut(s) 373, 574
RseI CAYNNNNRTG 1 cut(s) 80
SalI GTCGAC 1 cut(s) 158
SaqAI TTAA 4 cut(s) 92, 146, 297, 345
SatI GCNGC 4 cut(s) 58, 357, 628, 720
Sau3AI GATC 3 cut(s) 406, 793, 805
Sau96I GGNCC 1 cut(s) 602
SchI GAGTC 1 cut(s) 155
SfoI GGCGCC 1 cut(s) 510
SmiMI CAYNNNNRTG 1 cut(s) 80
SmlI CTYRAG 1 cut(s) 443
SmoI CTYRAG 1 cut(s) 443
Sse9I AATT 2 cut(s) 451, 498
SsiI CCGC 8 cut(s) 57, 60, 209, 356, 359, 552, 627, 719
SspDI GGCGCC 1 cut(s) 508
SspMI CTAG 3 cut(s) 155, 326, 684
StyI CCWWGG 1 cut(s) 104
TaaI ACNGT 3 cut(s) 27, 609, 707
TaiI ACGT 4 cut(s) 80, 520, 532, 783
TaqI TCGA 3 cut(s) 44, 159, 747
TasI AATT 2 cut(s) 451, 498
TauI GCSGC 4 cut(s) 60, 359, 630, 722
TfiI GAWTC 3 cut(s) 7, 115, 568
Tru1I TTAA 4 cut(s) 92, 146, 297, 345
Tru9I TTAA 4 cut(s) 92, 146, 297, 345
TscAI CASTG 1 cut(s) 289
TseFI GTSAC 2 cut(s) 86, 695
Tsp45I GTSAC 2 cut(s) 86, 695
TspDTI ATGAA 4 cut(s) 217, 495, 860, 872
TspGWI ACGGA 3 cut(s) 295, 322, 561
TspRI CASTG 1 cut(s) 289
XmiI GTMKAC 1 cut(s) 159
XspI CTAG 3 cut(s) 155, 326, 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.