Rh1BG233400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0003426
Physical Location & Seq
Reverse (-)
35609284 .. 35619165
9882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG233400.1

Sequence Viewer

Length: 714 bp
ATGAATGGTGATGGTTCAAAGGAGTCTTCTAAAGAAGTGTCTTTGGAAGCTCAGGAAGATTTAAACGTGTATGGGAGCTTGAAAGGATCAATCGGAGCTACAGAAAGCGTTGCGTTGCCATCCAGGATGGATATTGACAAAGTGATTATCGATGTCGAAGAGGATTCAAAAGGGTTTGGTGAAGGCAATGAAATTGGGTTAAAGAAGCAGAAGATATGTAAAAAGAACGATGGAAAAGGGTGGAAGTGTAGAAAGGAAGTGAAGGAAGGGTACTCATTTTGCAATCACCACATAACCCTTATTAGGTCTTACCATAATACTGGCAGCAACAATGCTACTAGCAATGCTAACAAGTCCTTTTCTTTCAAGAAGCCCAAGGTGACCACGAGAGAGGCTCCTGAGGCCAAGGCGAAAAAGGGCTCGTCCTCGAAGTCTAATGACTATATATACTACTCGCTTTTTAGTCCATGGTGGAATCAGAATAGAAGGACTATAGTTGAGGAACAGACCGCGAAGAATATTGCTGTTGAAAATGGTGCTACTACATCCTCTACTAGTGTAGCTACTCCAAATCAAGATCCTCCATCACCCAAGGCTGGTAATCAGAATCAATCAGCTTATGTGGATGTCAATGAAGGCAACGATGATGGGAGCAACAAATGTCGCCGAAAGAGGATGAGGAAGCCTATGAAGGCTGTCCTTATTTCCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WRC

Protein Analysis

237

Amino Acids

26.08

Weight (kDa)

9.26

Isoelectric Point (pI)

40.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRC PF08879 73 - 106 1.4e-09 WRC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 512
AciI CCGC 1 cut(s) 510
AclWI GGATC 2 cut(s) 94, 572
AfaI GTAC 1 cut(s) 272
AfiI CCNNNNNNNGG 2 cut(s) 303, 596
AflIII ACRYGT 1 cut(s) 66
AgsI TTSAA 5 cut(s) 18, 82, 168, 367, 530
AhlI ACTAGT 1 cut(s) 554
AjnI CCWGG 1 cut(s) 122
AluBI AGCT 6 cut(s) 50, 78, 98, 563, 617, 711
AluI AGCT 6 cut(s) 50, 78, 98, 563, 617, 711
AlwI GGATC 2 cut(s) 94, 572
AoxI GGCC 1 cut(s) 402
ApeKI GCWGC 1 cut(s) 324
AsuHPI GGTGA 5 cut(s) 20, 191, 278, 391, 579
AxyI CCTNAGG 1 cut(s) 399
BanII GRGCYC 1 cut(s) 422
BarI GAAGNNNNNNTAC 2 cut(s) 254, 286
BauI CACGAG 1 cut(s) 385
BbsI GAAGAC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 336
BccI CCATC 6 cut(s) 5, 121, 127, 224, 592, 641
BciT130I CCWGG 1 cut(s) 124
BcuI ACTAGT 1 cut(s) 554
BfaI CTAG 2 cut(s) 339, 555
BfmI CTRYAG 2 cut(s) 99, 492
BisI GCNGC 1 cut(s) 325
BlsI GCNGC 1 cut(s) 326
Bme1390I CCNGG 1 cut(s) 124
BmiI GGNNCC 1 cut(s) 396
BmrFI CCNGG 1 cut(s) 124
BpiI GAAGAC 1 cut(s) 18
BplI GAGNNNNNCTC 2 cut(s) 379, 411
Bpu10I CCTNAGC 1 cut(s) 51
Bsa29I ATCGAT 1 cut(s) 150
BsaJI CCNNGG 4 cut(s) 375, 405, 467, 591
Bsc4I CCNNNNNNNGG 2 cut(s) 303, 596
Bse1I ACTGG 1 cut(s) 325
Bse21I CCTNAGG 1 cut(s) 399
Bse3DI GCAATG 2 cut(s) 193, 349
BseBI CCWGG 1 cut(s) 124
BseCI ATCGAT 1 cut(s) 150
BseDI CCNNGG 4 cut(s) 375, 405, 467, 591
BseGI GGATG 5 cut(s) 119, 132, 545, 631, 681
BseLI CCNNNNNNNGG 2 cut(s) 303, 596
BseMI GCAATG 2 cut(s) 193, 349
BseMII CTCAG 2 cut(s) 65, 390
BseNI ACTGG 1 cut(s) 325
BseXI GCAGC 1 cut(s) 336
Bsh1236I CGCG 1 cut(s) 512
BshFI GGCC 1 cut(s) 404
BshVI ATCGAT 1 cut(s) 150
BslI CCNNNNNNNGG 2 cut(s) 303, 596
BsnI GGCC 1 cut(s) 404
Bsp1286I GDGCHC 1 cut(s) 422
Bsp143I GATC 2 cut(s) 86, 577
Bsp19I CCATGG 1 cut(s) 467
BspACI CCGC 1 cut(s) 510
BspANI GGCC 1 cut(s) 404
BspCNI CTCAG 2 cut(s) 64, 391
BspDI ATCGAT 1 cut(s) 150
BspFNI CGCG 1 cut(s) 512
BspLI GGNNCC 1 cut(s) 396
BspPI GGATC 2 cut(s) 94, 572
BsrDI GCAATG 2 cut(s) 193, 349
BsrI ACTGG 1 cut(s) 325
BssECI CCNNGG 4 cut(s) 375, 405, 467, 591
BssMI GATC 2 cut(s) 86, 577
BssSI CACGAG 1 cut(s) 385
BssT1I CCWWGG 4 cut(s) 375, 405, 467, 591
Bst2BI CACGAG 1 cut(s) 385
Bst2UI CCWGG 1 cut(s) 124
Bst6I CTCTTC 1 cut(s) 153
BstDEI CTNAG 2 cut(s) 51, 399
BstDSI CCRYGG 1 cut(s) 467
BstEII GGTNACC 1 cut(s) 379
BstF5I GGATG 5 cut(s) 119, 132, 545, 631, 681
BstFNI CGCG 1 cut(s) 512
BstKTI GATC 2 cut(s) 89, 580
BstMBI GATC 2 cut(s) 86, 577
BstMWI GCNNNNNNNGC 1 cut(s) 401
BstNI CCWGG 1 cut(s) 124
BstPI GGTNACC 1 cut(s) 379
BstSCI CCNGG 1 cut(s) 122
BstSFI CTRYAG 2 cut(s) 99, 492
BstUI CGCG 1 cut(s) 512
BstV1I GCAGC 1 cut(s) 336
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 577
BstXI CCANNNNNNTGG 1 cut(s) 320
BstYI RGATCY 1 cut(s) 577
Bsu15I ATCGAT 1 cut(s) 150
Bsu36I CCTNAGG 1 cut(s) 399
BsuRI GGCC 1 cut(s) 404
BsuTUI ATCGAT 1 cut(s) 150
BtgI CCRYGG 1 cut(s) 467
BtsCI GGATG 5 cut(s) 119, 132, 545, 631, 681
ClaI ATCGAT 1 cut(s) 150
Csp6I GTAC 1 cut(s) 271
CviAII CATG 1 cut(s) 468
CviQI GTAC 1 cut(s) 271
DdeI CTNAG 2 cut(s) 51, 399
DpnI GATC 2 cut(s) 88, 579
DpnII GATC 2 cut(s) 86, 577
DraI TTTAAA 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Eco130I CCWWGG 4 cut(s) 375, 405, 467, 591
Eco24I GRGCYC 1 cut(s) 422
Eco81I CCTNAGG 1 cut(s) 399
Eco91I GGTNACC 1 cut(s) 379
EcoO65I GGTNACC 1 cut(s) 379
EcoRII CCWGG 1 cut(s) 122
EcoT14I CCWWGG 4 cut(s) 375, 405, 467, 591
EcoT38I GRGCYC 1 cut(s) 422
ErhI CCWWGG 4 cut(s) 375, 405, 467, 591
FaeI CATG 1 cut(s) 471
FatI CATG 1 cut(s) 467
Fnu4HI GCNGC 1 cut(s) 325
FokI GGATG 5 cut(s) 106, 139, 532, 638, 688
FriOI GRGCYC 1 cut(s) 422
Fsp4HI GCNGC 1 cut(s) 325
FspBI CTAG 2 cut(s) 339, 555
GluI GCNGC 1 cut(s) 325
HaeIII GGCC 1 cut(s) 404
Hin1II CATG 1 cut(s) 471
HinfI GANTC 4 cut(s) 23, 164, 475, 607
HphI GGTGA 5 cut(s) 20, 191, 278, 391, 579
Hpy188I TCNGA 3 cut(s) 95, 480, 606
Hpy188III TCNNGA 4 cut(s) 53, 367, 398, 575
HpyAV CCTTC 6 cut(s) 176, 256, 260, 480, 629, 685
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 1 cut(s) 282
HpyF10VI GCNNNNNNNGC 1 cut(s) 401
HpyF3I CTNAG 2 cut(s) 51, 399
HpySE526I ACGT 1 cut(s) 66
Hsp92II CATG 1 cut(s) 471
Kzo9I GATC 2 cut(s) 86, 577
LmnI GCTCC 4 cut(s) 75, 95, 400, 651
LpnPI CCDG 6 cut(s) 38, 109, 136, 306, 411, 582
Lsp1109I GCAGC 1 cut(s) 336
MaeI CTAG 2 cut(s) 339, 555
MaeII ACGT 1 cut(s) 66
MaeIII GTNAC 1 cut(s) 379
MalI GATC 2 cut(s) 88, 579
MboI GATC 2 cut(s) 86, 577
MboII GAAGA 5 cut(s) 18, 68, 170, 223, 526
MflI RGATCY 1 cut(s) 577
MhlI GDGCHC 1 cut(s) 422
MluCI AATT 1 cut(s) 192
MlyI GAGTC 1 cut(s) 32
MnlI CCTC 9 cut(s) 154, 385, 394, 436, 493, 559, 591, 666, 672
MseI TTAA 2 cut(s) 62, 200
MspA1I CMGCKG 1 cut(s) 711
MspR9I CCNGG 1 cut(s) 124
MvaI CCWGG 1 cut(s) 124
MvnI CGCG 1 cut(s) 512
MwoI GCNNNNNNNGC 1 cut(s) 401
NcoI CCATGG 1 cut(s) 467
NdeII GATC 2 cut(s) 86, 577
NlaIII CATG 1 cut(s) 471
NlaIV GGNNCC 1 cut(s) 396
NmuCI GTSAC 1 cut(s) 379
PfeI GAWTC 3 cut(s) 164, 475, 607
PfoI TCCNGGA 1 cut(s) 122
PkrI GCNGC 1 cut(s) 326
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
Psp6I CCWGG 1 cut(s) 122
PspEI GGTNACC 1 cut(s) 379
PspGI CCWGG 1 cut(s) 122
PspN4I GGNNCC 1 cut(s) 396
PsuI RGATCY 1 cut(s) 577
PvuII CAGCTG 1 cut(s) 711
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
SaqAI TTAA 2 cut(s) 62, 200
SatI GCNGC 1 cut(s) 325
Sau3AI GATC 2 cut(s) 86, 577
SchI GAGTC 1 cut(s) 32
ScrFI CCNGG 1 cut(s) 124
SduI GDGCHC 1 cut(s) 422
SetI ASST 9 cut(s) 52, 69, 80, 100, 308, 381, 565, 619, 713
SfcI CTRYAG 2 cut(s) 99, 492
SpeI ACTAGT 1 cut(s) 554
Sse9I AATT 1 cut(s) 192
SsiI CCGC 1 cut(s) 510
SspI AATATT 1 cut(s) 520
SspMI CTAG 2 cut(s) 339, 555
StyD4I CCNGG 1 cut(s) 122
StyI CCWWGG 4 cut(s) 375, 405, 467, 591
TaiI ACGT 1 cut(s) 69
TaqI TCGA 3 cut(s) 150, 156, 428
TasI AATT 1 cut(s) 192
TfiI GAWTC 3 cut(s) 164, 475, 607
Tru1I TTAA 2 cut(s) 62, 200
Tru9I TTAA 2 cut(s) 62, 200
TseFI GTSAC 1 cut(s) 379
TseI GCWGC 1 cut(s) 324
Tsp45I GTSAC 1 cut(s) 379
TspDTI ATGAA 4 cut(s) 17, 204, 648, 704
XspI CTAG 2 cut(s) 339, 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.