FvH4_7g14880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0003426
Physical Location & Seq
Reverse (-)
13034613 .. 13036267
1655 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g14880.t1

Sequence Viewer

Length: 1206 bp
ATGGTGAGAATTCGTAAGGGCCTTAAACACTCGCCTCTGATACACTGCTCCAACGTAGCTCCGGAGGACCTCCAGCCACATATCTGCCGCCTGAATCAGTCTCGGTGGGACGTCAATCCCCTTCCCGAGATCTGCGAAAATCCGTTCGAAGCTGAAGATGATTTGAACGTGAATAAGAGTGGGAGAAGGAGTGGTACTATTGGAGCTGCAAAGAGTGTTGTGTTGTCATCCGAGATGGATGTTGACAAAGTGATTATCGATATCGAAGAGAGTTCGAAAGAGGTTGGTGAACGCAATGAAACTGGGTTTAAGAAGCAGAAGATATGTAAAAAGAACGATGGAAAAGGATGGAACTGTAAGAGAAAAGTGGAGGAAGGATACTCATTTTGCACACACCACCTGACTCTTATTAGGACTTACCATAATAATAGCAGTAACAATGCTACTAGCAATGCTCCCAAGTCCATGTCGTTGAAGAAGCCAAAGGTGGCTAGGGGAAAATCTCCAGAGGCTAAGGTGGAAAATGGTTCGAATTCGTGCAAGTCTGGCGATTATGTATACTACCTGAATTCTAAGCTGGTGCGAAATATGGATAGAATGGTTATAGCCGAGGAAGAAACCACAACGAATTTTGCAGTTGAAAGTGATGCTATTACTTTCGCGGCTACTACCGTGACTCTAAAAAGTGATCCTCCATCCGCAAAGGCCGATTATGAGAATCGACCTGCTAATGTGGAAGTTAATGAAGTAAAAGTTGATGGGAGCAACGTATGCGGCCGAAAGAGGAGTAGAAAGATGAAGAACCCTAAGAGGGCTAGGATCTTCTCGACCATATTTCCTACTGAAACCACCGAGGAAGGAACCACAACAAATGTTGCAGTTGAAAGTGATGCTATTACTTCCTCGGCTACTACCGTGACTCTAAAAAGTGATCCTCCATCCGCAAAGGCCGATTATGAGAATCAACCTGCTAATGTGGAAGTTAATGAAGTAAAAGTTGATGGGAGCAACGTATGCGGCCGAAAGAGGAGTAGAAAGATGAAGAACCCTAAGAGGGCTAGGATCTTCTCGACCATATTTCCTACTGAAACCGCCGAGGAAGGAACCACAACGAATGTTGCAGTTGAAAGTGATGCTATTACTTCCTCGGCTACTACTGTGACTCTAAAAAGTGATCCTCCATCCTCAAAGGTTGATTATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WRC

Protein Analysis

402

Amino Acids

44.16

Weight (kDa)

8.78

Isoelectric Point (pI)

46.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRC PF08879 109 - 144 2.8e-09 WRC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 114
Acc36I ACCTGC 2 cut(s) 733, 976
AccI GTMKAC 1 cut(s) 558
AccII CGCG 1 cut(s) 662
AccIII TCCGGA 1 cut(s) 61
AciI CCGC 7 cut(s) 88, 662, 699, 774, 942, 1017, 1092
AclWI GGATC 5 cut(s) 683, 827, 926, 1070, 1169
AcoI YGGCCR 2 cut(s) 775, 1018
AcsI RAATTY 4 cut(s) 9, 532, 568, 628
AcuI CTGAAG 1 cut(s) 174
AcyI GRCGYC 1 cut(s) 111
AfaI GTAC 1 cut(s) 196
AfiI CCNNNNNNNGG 2 cut(s) 811, 1054
AgsI TTSAA 5 cut(s) 166, 475, 641, 884, 1127
AluBI AGCT 4 cut(s) 59, 152, 206, 577
AluI AGCT 4 cut(s) 59, 152, 206, 577
Alw26I GTCTC 1 cut(s) 105
AlwI GGATC 5 cut(s) 683, 827, 926, 1070, 1169
Ama87I CYCGRG 1 cut(s) 125
Aor13HI TCCGGA 1 cut(s) 61
AoxI GGCC 5 cut(s) 19, 705, 775, 948, 1018
ApeKI GCWGC 1 cut(s) 206
ApoI RAATTY 4 cut(s) 9, 532, 568, 628
AspS9I GGNCC 2 cut(s) 19, 67
AsuHPI GGTGA 2 cut(s) 16, 299
AsuII TTCGAA 3 cut(s) 147, 275, 530
AvaI CYCGRG 1 cut(s) 125
AvaII GGWCC 1 cut(s) 67
BarI GAAGNNNNNNTAC 2 cut(s) 178, 210
BbvI GCAGC 1 cut(s) 193
BccI CCATC 8 cut(s) 229, 332, 342, 703, 752, 946, 995, 1189
BciVI GTATCC 1 cut(s) 371
BcoDI GTCTC 1 cut(s) 105
BfaI CTAG 4 cut(s) 447, 492, 816, 1059
BfuAI ACCTGC 2 cut(s) 733, 976
BfuI GTATCC 1 cut(s) 371
BglII AGATCT 1 cut(s) 129
BisI GCNGC 5 cut(s) 88, 207, 663, 775, 1018
BlsI GCNGC 5 cut(s) 89, 208, 664, 776, 1019
Bme18I GGWCC 1 cut(s) 67
BmeT110I CYCGRG 1 cut(s) 125
BmgT120I GGNCC 2 cut(s) 19, 67
BmiI GGNNCC 2 cut(s) 862, 1105
BmrI ACTGGG 1 cut(s) 312
BmsI GCATC 3 cut(s) 637, 880, 1123
BmuI ACTGGG 1 cut(s) 312
BpmI CTGGAG 2 cut(s) 56, 489
Bpu10I CCTNAGC 1 cut(s) 513
Bpu14I TTCGAA 3 cut(s) 147, 275, 530
Bsa29I ATCGAT 1 cut(s) 258
BsaHI GRCGYC 1 cut(s) 111
BsaJI CCNNGG 5 cut(s) 609, 852, 903, 1095, 1146
BsaWI WCCGGW 1 cut(s) 61
BsaXI ACNNNNNCTCC 2 cut(s) 175, 205
Bsc4I CCNNNNNNNGG 2 cut(s) 811, 1054
Bse1I ACTGG 1 cut(s) 307
Bse3DI GCAATG 2 cut(s) 301, 457
BseAI TCCGGA 1 cut(s) 61
BseCI ATCGAT 1 cut(s) 258
BseDI CCNNGG 5 cut(s) 609, 852, 903, 1095, 1146
BseGI GGATG 6 cut(s) 227, 244, 353, 695, 938, 1181
BseLI CCNNNNNNNGG 2 cut(s) 811, 1054
BseMI GCAATG 2 cut(s) 301, 457
BseNI ACTGG 1 cut(s) 307
BseRI GAGGAG 2 cut(s) 799, 1042
BseX3I CGGCCG 2 cut(s) 775, 1018
BseXI GCAGC 1 cut(s) 193
Bsh1236I CGCG 1 cut(s) 662
Bsh1285I CGRYCG 2 cut(s) 778, 1021
BshFI GGCC 5 cut(s) 21, 707, 777, 950, 1020
BshVI ATCGAT 1 cut(s) 258
BsiEI CGRYCG 2 cut(s) 778, 1021
BsiHKCI CYCGRG 1 cut(s) 125
BsiSI CCGG 1 cut(s) 62
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 2 cut(s) 811, 1054
BsmAI GTCTC 1 cut(s) 105
BsmFI GGGAC 1 cut(s) 122
BsnI GGCC 5 cut(s) 21, 707, 777, 950, 1020
BsoBI CYCGRG 1 cut(s) 125
Bsp119I TTCGAA 3 cut(s) 147, 275, 530
Bsp13I TCCGGA 1 cut(s) 61
Bsp143I GATC 6 cut(s) 129, 688, 819, 931, 1062, 1174
BspACI CCGC 7 cut(s) 88, 662, 699, 774, 942, 1017, 1092
BspANI GGCC 5 cut(s) 21, 707, 777, 950, 1020
BspDI ATCGAT 1 cut(s) 258
BspEI TCCGGA 1 cut(s) 61
BspFNI CGCG 1 cut(s) 662
BspLI GGNNCC 2 cut(s) 862, 1105
BspMI ACCTGC 2 cut(s) 733, 976
BspPI GGATC 5 cut(s) 683, 827, 926, 1070, 1169
BspT104I TTCGAA 3 cut(s) 147, 275, 530
BsrDI GCAATG 2 cut(s) 301, 457
BsrI ACTGG 1 cut(s) 307
BssECI CCNNGG 5 cut(s) 609, 852, 903, 1095, 1146
BssMI GATC 6 cut(s) 129, 688, 819, 931, 1062, 1174
BssNAI GTATAC 1 cut(s) 559
BssNI GRCGYC 1 cut(s) 111
Bst1107I GTATAC 1 cut(s) 559
Bst4CI ACNGT 4 cut(s) 356, 673, 916, 1159
Bst6I CTCTTC 1 cut(s) 261
BstACI GRCGYC 1 cut(s) 111
BstAPI GCANNNNNTGC 2 cut(s) 771, 1014
BstBI TTCGAA 3 cut(s) 147, 275, 530
BstDEI CTNAG 4 cut(s) 513, 573, 807, 1050
BstF5I GGATG 6 cut(s) 227, 244, 353, 695, 938, 1181
BstFNI CGCG 1 cut(s) 662
BstKTI GATC 6 cut(s) 132, 691, 822, 934, 1065, 1177
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 6 cut(s) 129, 688, 819, 931, 1062, 1174
BstMCI CGRYCG 2 cut(s) 778, 1021
BstMWI GCNNNNNNNGC 3 cut(s) 546, 771, 1014
BstUI CGCG 1 cut(s) 662
BstV1I GCAGC 1 cut(s) 193
BstX2I RGATCY 3 cut(s) 129, 819, 1062
BstYI RGATCY 3 cut(s) 129, 819, 1062
BstZ17I GTATAC 1 cut(s) 559
BstZI CGGCCG 2 cut(s) 775, 1018
Bsu15I ATCGAT 1 cut(s) 258
BsuI GTATCC 1 cut(s) 371
BsuRI GGCC 5 cut(s) 21, 707, 777, 950, 1020
BsuTUI ATCGAT 1 cut(s) 258
BtsCI GGATG 6 cut(s) 227, 244, 353, 695, 938, 1181
BtsI GCAGTG 1 cut(s) 43
BtsIMutI CAGTG 1 cut(s) 43
BveI ACCTGC 2 cut(s) 733, 976
Cfr13I GGNCC 2 cut(s) 19, 67
ClaI ATCGAT 1 cut(s) 258
Csp6I GTAC 1 cut(s) 195
CviAII CATG 1 cut(s) 466
CviQI GTAC 1 cut(s) 195
DdeI CTNAG 4 cut(s) 513, 573, 807, 1050
DpnI GATC 6 cut(s) 131, 690, 821, 933, 1064, 1176
DpnII GATC 6 cut(s) 129, 688, 819, 931, 1062, 1174
EaeI YGGCCR 2 cut(s) 775, 1018
EagI CGGCCG 2 cut(s) 775, 1018
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
EclXI CGGCCG 2 cut(s) 775, 1018
Eco32I GATATC 1 cut(s) 262
Eco47I GGWCC 1 cut(s) 67
Eco52I CGGCCG 2 cut(s) 775, 1018
Eco57I CTGAAG 1 cut(s) 174
Eco88I CYCGRG 1 cut(s) 125
EcoO109I RGGNCCY 2 cut(s) 19, 67
EcoRI GAATTC 3 cut(s) 9, 532, 568
EcoRV GATATC 1 cut(s) 262
FaeI CATG 1 cut(s) 469
FaqI GGGAC 1 cut(s) 122
FatI CATG 1 cut(s) 465
FblI GTMKAC 1 cut(s) 558
Fnu4HI GCNGC 5 cut(s) 88, 207, 663, 775, 1018
FokI GGATG 6 cut(s) 214, 251, 360, 682, 925, 1168
Fsp4HI GCNGC 5 cut(s) 88, 207, 663, 775, 1018
FspBI CTAG 4 cut(s) 447, 492, 816, 1059
GluI GCNGC 5 cut(s) 88, 207, 663, 775, 1018
GsuI CTGGAG 2 cut(s) 56, 489
HaeIII GGCC 5 cut(s) 21, 707, 777, 950, 1020
HapII CCGG 1 cut(s) 62
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 1 cut(s) 469
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 7 cut(s) 94, 403, 676, 718, 919, 961, 1162
HpaII CCGG 1 cut(s) 62
HphI GGTGA 2 cut(s) 16, 299
Hpy166II GTNNAC 3 cut(s) 244, 290, 559
Hpy188I TCNGA 2 cut(s) 39, 232
Hpy188III TCNNGA 5 cut(s) 62, 125, 506, 826, 1069
Hpy8I GTNNAC 3 cut(s) 244, 290, 559
HpyAV CCTTC 5 cut(s) 131, 180, 368, 851, 1094
HpyCH4III ACNGT 4 cut(s) 356, 673, 916, 1159
HpyCH4IV ACGT 5 cut(s) 54, 111, 168, 768, 1011
HpyCH4V TGCA 6 cut(s) 209, 390, 540, 635, 878, 1121
HpyF10VI GCNNNNNNNGC 3 cut(s) 546, 771, 1014
HpyF3I CTNAG 4 cut(s) 513, 573, 807, 1050
HpySE526I ACGT 5 cut(s) 54, 111, 168, 768, 1011
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 1 cut(s) 469
Kpn2I TCCGGA 1 cut(s) 61
Kzo9I GATC 6 cut(s) 129, 688, 819, 931, 1062, 1174
LmnI GCTCC 6 cut(s) 53, 64, 203, 460, 762, 1005
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 3 cut(s) 637, 880, 1123
MaeI CTAG 4 cut(s) 447, 492, 816, 1059
MaeII ACGT 5 cut(s) 54, 111, 168, 768, 1011
MaeIII GTNAC 4 cut(s) 434, 673, 916, 1159
MalI GATC 6 cut(s) 131, 690, 821, 933, 1064, 1176
MboI GATC 6 cut(s) 129, 688, 819, 931, 1062, 1174
MboII GAAGA 9 cut(s) 167, 278, 331, 487, 626, 811, 814, 1054, 1057
MflI RGATCY 3 cut(s) 129, 819, 1062
MluCI AATT 4 cut(s) 9, 532, 568, 628
MlyI GAGTC 4 cut(s) 397, 670, 913, 1156
MmeI TCCRAC 1 cut(s) 75
MroI TCCGGA 1 cut(s) 61
MseI TTAA 4 cut(s) 24, 309, 741, 984
MspI CCGG 1 cut(s) 62
MvnI CGCG 1 cut(s) 662
MwoI GCNNNNNNNGC 3 cut(s) 546, 771, 1014
NdeII GATC 6 cut(s) 129, 688, 819, 931, 1062, 1174
NlaIII CATG 1 cut(s) 469
NlaIV GGNNCC 2 cut(s) 862, 1105
NmeAIII GCCGAG 4 cut(s) 634, 884, 1120, 1127
NmuCI GTSAC 3 cut(s) 673, 916, 1159
NspV TTCGAA 3 cut(s) 147, 275, 530
PfeI GAWTC 3 cut(s) 94, 718, 961
PkrI GCNGC 5 cut(s) 89, 208, 664, 776, 1019
PleI GAGTC 4 cut(s) 397, 670, 913, 1156
PpsI GAGTC 4 cut(s) 397, 670, 913, 1156
PpuMI RGGWCCY 1 cut(s) 67
Psp5II RGGWCCY 1 cut(s) 67
PspN4I GGNNCC 2 cut(s) 862, 1105
PspPI GGNCC 2 cut(s) 19, 67
PspPPI RGGWCCY 1 cut(s) 67
PsuI RGATCY 3 cut(s) 129, 819, 1062
RsaI GTAC 1 cut(s) 196
RsaNI GTAC 1 cut(s) 195
SaqAI TTAA 4 cut(s) 24, 309, 741, 984
SatI GCNGC 5 cut(s) 88, 207, 663, 775, 1018
Sau3AI GATC 6 cut(s) 129, 688, 819, 931, 1062, 1174
Sau96I GGNCC 2 cut(s) 19, 67
SchI GAGTC 4 cut(s) 397, 670, 913, 1156
SfaNI GCATC 3 cut(s) 637, 880, 1123
SfuI TTCGAA 3 cut(s) 147, 275, 530
SinI GGWCC 1 cut(s) 67
Sse9I AATT 4 cut(s) 9, 532, 568, 628
SsiI CCGC 7 cut(s) 88, 662, 699, 774, 942, 1017, 1092
SspMI CTAG 4 cut(s) 447, 492, 816, 1059
TaaI ACNGT 4 cut(s) 356, 673, 916, 1159
TaiI ACGT 5 cut(s) 57, 114, 171, 771, 1014
TaqI TCGA 8 cut(s) 147, 258, 264, 275, 530, 721, 827, 1070
TasI AATT 4 cut(s) 9, 532, 568, 628
TauI GCSGC 4 cut(s) 90, 665, 777, 1020
TfiI GAWTC 3 cut(s) 94, 718, 961
Tru1I TTAA 4 cut(s) 24, 309, 741, 984
Tru9I TTAA 4 cut(s) 24, 309, 741, 984
TscAI CASTG 1 cut(s) 50
TseFI GTSAC 3 cut(s) 673, 916, 1159
TseI GCWGC 1 cut(s) 206
Tsp45I GTSAC 3 cut(s) 673, 916, 1159
TspDTI ATGAA 5 cut(s) 312, 759, 812, 1002, 1055
TspGWI ACGGA 1 cut(s) 132
TspRI CASTG 1 cut(s) 50
VpaK11BI GGWCC 1 cut(s) 67
XapI RAATTY 4 cut(s) 9, 532, 568, 628
XmiI GTMKAC 1 cut(s) 558
XspI CTAG 4 cut(s) 447, 492, 816, 1059
ZraI GACGTC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.