Rh1BG235100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0003426
Physical Location & Seq
Forward (+)
35831457 .. 35833443
1987 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG235100.1

Sequence Viewer

Length: 645 bp
ATGGATATCGACAAGGCAGAAATGGCGACCGGCGATGTGTTGGATGACGTCGACAGAGCAATTGTGAGGTGTCAAAAGAACGACGGCAGGAGCTGGCAATGCAAGAAGGAAGCGAAAGAAGGCTTCTTATTTTGTGACCATCATATCCGAAGGTCGTCCTATGGTAACAACAACGTTACTAGCAATGGCAATATTCTTCCCTCCAACTTCGTGGCTTCGAAGAAGGACACGGCGGCGGCCCCGGCCAAGACGCTAGCCGGAACCCGCCGTGCCAGACCCAAGGCGGTGAAGAAGGCGGCTTCGTCGGCGAACCCGTATGAGTTCTACTATTATTCGGGGTTCGGCCCAAAATGGGGCCGAAAGAGAGGCAAGAAAGGCGAGGTGGTGGAGGAGGAGGAGGAGGAGGCCAATAATATTGAGTCAGCAGCTGGAAAGGTTGCAACTTCTTGTAGTACTAGTAGTGCTAACACCGATCCCCAACCTTCTTCACCTCACAACGTTGGTAATGGGGATCAATTGGACTACATGGAAGACGACTTCGACGACGAGGATGGGAGCGACGAAGAAGGCGGCCCGAGGAGGATGAGGAGGCCGGTGAAGGCTCGATCCTTGATGTCCATAATTAATGTAAAAGCTCAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WRC

Protein Analysis

214

Amino Acids

23.52

Weight (kDa)

6.02

Isoelectric Point (pI)

63.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRC PF08879 22 - 55 2e-09 WRC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 51
AccI GTMKAC 1 cut(s) 51
AciI CCGC 6 cut(s) 233, 236, 265, 284, 296, 570
AclI AACGTT 2 cut(s) 174, 498
AclWI GGATC 3 cut(s) 467, 519, 600
AcoI YGGCCR 1 cut(s) 243
AcyI GRCGYC 1 cut(s) 48
AfaI GTAC 1 cut(s) 454
AfiI CCNNNNNNNGG 2 cut(s) 352, 353
AhlI ACTAGT 1 cut(s) 455
AluBI AGCT 3 cut(s) 93, 428, 635
AluI AGCT 3 cut(s) 93, 428, 635
AlwI GGATC 3 cut(s) 467, 519, 600
AlwNI CAGNNNCTG 2 cut(s) 93, 428
Ama87I CYCGRG 1 cut(s) 574
AoxI GGCC 7 cut(s) 237, 243, 343, 355, 405, 571, 590
ApeKI GCWGC 1 cut(s) 425
AseI ATTAAT 1 cut(s) 624
AspS9I GGNCC 4 cut(s) 238, 344, 355, 572
AsuC2I CCSGG 1 cut(s) 242
AsuHPI GGTGA 3 cut(s) 298, 480, 607
AsuII TTCGAA 1 cut(s) 218
AsuNHI GCTAGC 1 cut(s) 253
AvaI CYCGRG 1 cut(s) 574
BbsI GAAGAC 1 cut(s) 537
BbvI GCAGC 1 cut(s) 437
BccI CCATC 2 cut(s) 147, 545
BceAI ACGGC 3 cut(s) 100, 246, 252
BcnI CCSGG 1 cut(s) 242
BcuI ACTAGT 1 cut(s) 455
BfaI CTAG 3 cut(s) 180, 254, 456
BisI GCNGC 5 cut(s) 234, 237, 297, 426, 571
BlsI GCNGC 5 cut(s) 235, 238, 298, 427, 572
BmcAI AGTACT 1 cut(s) 454
Bme1390I CCNGG 1 cut(s) 242
BmeT110I CYCGRG 1 cut(s) 574
BmgT120I GGNCC 4 cut(s) 238, 344, 355, 572
BmiI GGNNCC 3 cut(s) 240, 262, 356
BmrFI CCNGG 1 cut(s) 242
BmtI GCTAGC 1 cut(s) 257
BpiI GAAGAC 1 cut(s) 537
Bpu14I TTCGAA 1 cut(s) 218
BpuEI CTTGAG 1 cut(s) 621
BpuMI CCSGG 1 cut(s) 242
BsaHI GRCGYC 1 cut(s) 48
BsaJI CCNNGG 3 cut(s) 240, 279, 575
Bsc4I CCNNNNNNNGG 2 cut(s) 352, 353
Bse118I RCCGGY 2 cut(s) 29, 592
Bse3DI GCAATG 2 cut(s) 104, 190
BseDI CCNNGG 3 cut(s) 240, 279, 575
BseGI GGATG 3 cut(s) 49, 556, 588
BseLI CCNNNNNNNGG 2 cut(s) 352, 353
BseMI GCAATG 2 cut(s) 104, 190
BseRI GAGGAG 7 cut(s) 404, 407, 410, 413, 416, 592, 601
BseXI GCAGC 1 cut(s) 437
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 7 cut(s) 239, 245, 345, 357, 407, 573, 592
BsiEI CGRYCG 1 cut(s) 30
BsiHKCI CYCGRG 1 cut(s) 574
BsiSI CCGG 4 cut(s) 30, 242, 258, 593
BslI CCNNNNNNNGG 2 cut(s) 352, 353
BsnI GGCC 7 cut(s) 239, 245, 345, 357, 407, 573, 592
BsoBI CYCGRG 1 cut(s) 574
Bsp119I TTCGAA 1 cut(s) 218
Bsp143I GATC 3 cut(s) 472, 511, 605
BspACI CCGC 6 cut(s) 233, 236, 265, 284, 296, 570
BspANI GGCC 7 cut(s) 239, 245, 345, 357, 407, 573, 592
BspLI GGNNCC 3 cut(s) 240, 262, 356
BspOI GCTAGC 1 cut(s) 257
BspPI GGATC 3 cut(s) 467, 519, 600
BspT104I TTCGAA 1 cut(s) 218
BsrDI GCAATG 2 cut(s) 104, 190
BsrFI RCCGGY 2 cut(s) 29, 592
BssAI RCCGGY 2 cut(s) 29, 592
BssECI CCNNGG 3 cut(s) 240, 279, 575
BssMI GATC 3 cut(s) 472, 511, 605
BssNI GRCGYC 1 cut(s) 48
BssT1I CCWWGG 1 cut(s) 279
BstACI GRCGYC 1 cut(s) 48
BstBI TTCGAA 1 cut(s) 218
BstC8I GCNNGC 2 cut(s) 95, 255
BstF5I GGATG 3 cut(s) 49, 556, 588
BstKTI GATC 3 cut(s) 475, 514, 608
BstMBI GATC 3 cut(s) 472, 511, 605
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 5 cut(s) 23, 99, 242, 305, 375
BstSCI CCNGG 1 cut(s) 240
BstV1I GCAGC 1 cut(s) 437
BstV2I GAAGAC 1 cut(s) 537
BstXI CCANNNNNNTGG 1 cut(s) 211
BsuRI GGCC 7 cut(s) 239, 245, 345, 357, 407, 573, 592
BtgZI GCGATG 1 cut(s) 48
BtsCI GGATG 3 cut(s) 49, 556, 588
Cac8I GCNNGC 2 cut(s) 95, 255
CaiI CAGNNNCTG 2 cut(s) 93, 428
Cfr10I RCCGGY 2 cut(s) 29, 592
Cfr13I GGNCC 4 cut(s) 238, 344, 355, 572
CseI GACGC 1 cut(s) 259
Csp6I GTAC 1 cut(s) 453
CviAII CATG 1 cut(s) 526
CviQI GTAC 1 cut(s) 453
DpnI GATC 3 cut(s) 474, 513, 607
DpnII GATC 3 cut(s) 472, 511, 605
EaeI YGGCCR 1 cut(s) 243
Eco130I CCWWGG 1 cut(s) 279
Eco32I GATATC 1 cut(s) 7
Eco88I CYCGRG 1 cut(s) 574
EcoRV GATATC 1 cut(s) 7
EcoT14I CCWWGG 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 1 cut(s) 529
FaiI YATR 5 cut(s) 144, 162, 318, 527, 620
FatI CATG 1 cut(s) 525
FauI CCCGC 1 cut(s) 272
FblI GTMKAC 1 cut(s) 51
Fnu4HI GCNGC 5 cut(s) 234, 237, 297, 426, 571
FokI GGATG 3 cut(s) 56, 563, 595
Fsp4HI GCNGC 5 cut(s) 234, 237, 297, 426, 571
FspBI CTAG 3 cut(s) 180, 254, 456
GluI GCNGC 5 cut(s) 234, 237, 297, 426, 571
HaeIII GGCC 7 cut(s) 239, 245, 345, 357, 407, 573, 592
HapII CCGG 4 cut(s) 30, 242, 258, 593
HgaI GACGC 1 cut(s) 259
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 1 cut(s) 529
HincII GTYRAC 1 cut(s) 52
HindII GTYRAC 1 cut(s) 52
HinfI GANTC 1 cut(s) 419
HpaII CCGG 4 cut(s) 30, 242, 258, 593
HphI GGTGA 3 cut(s) 298, 480, 607
Hpy166II GTNNAC 1 cut(s) 52
Hpy188I TCNGA 1 cut(s) 149
Hpy188III TCNNGA 1 cut(s) 638
Hpy8I GTNNAC 1 cut(s) 52
Hpy99I CGWCG 6 cut(s) 53, 86, 307, 545, 548, 563
HpyAV CCTTC 8 cut(s) 100, 113, 144, 217, 286, 492, 560, 592
HpyCH4IV ACGT 3 cut(s) 48, 174, 498
HpyCH4V TGCA 2 cut(s) 102, 440
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 99, 242, 305, 375
HpySE526I ACGT 3 cut(s) 48, 174, 498
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 1 cut(s) 529
Kzo9I GATC 3 cut(s) 472, 511, 605
LmnI GCTCC 2 cut(s) 90, 555
LpnPI CCDG 8 cut(s) 43, 73, 79, 255, 271, 286, 414, 606
Lsp1109I GCAGC 1 cut(s) 437
MaeI CTAG 3 cut(s) 180, 254, 456
MaeII ACGT 3 cut(s) 48, 174, 498
MaeIII GTNAC 3 cut(s) 134, 164, 175
MalI GATC 3 cut(s) 474, 513, 607
MboI GATC 3 cut(s) 472, 511, 605
MboII GAAGA 6 cut(s) 188, 232, 301, 477, 542, 575
MfeI CAATTG 2 cut(s) 60, 515
MluCI AATT 3 cut(s) 60, 515, 621
MlyI GAGTC 1 cut(s) 428
MmeI TCCRAC 2 cut(s) 21, 228
MseI TTAA 1 cut(s) 624
MspA1I CMGCKG 1 cut(s) 428
MspI CCGG 4 cut(s) 30, 242, 258, 593
MspR9I CCNGG 1 cut(s) 242
MunI CAATTG 2 cut(s) 60, 515
MwoI GCNNNNNNNGC 5 cut(s) 23, 99, 242, 305, 375
NciI CCSGG 1 cut(s) 242
NdeII GATC 3 cut(s) 472, 511, 605
NheI GCTAGC 1 cut(s) 253
NlaIII CATG 1 cut(s) 529
NlaIV GGNNCC 3 cut(s) 240, 262, 356
NmuCI GTSAC 1 cut(s) 134
NspV TTCGAA 1 cut(s) 218
PcsI WCGNNNNNNNCGW 2 cut(s) 311, 540
PkrI GCNGC 5 cut(s) 235, 238, 298, 427, 572
PleI GAGTC 1 cut(s) 427
PpsI GAGTC 1 cut(s) 427
PshBI ATTAAT 1 cut(s) 624
Psp1406I AACGTT 2 cut(s) 174, 498
PspN4I GGNNCC 3 cut(s) 240, 262, 356
PspPI GGNCC 4 cut(s) 238, 344, 355, 572
PstNI CAGNNNCTG 2 cut(s) 93, 428
PvuII CAGCTG 1 cut(s) 428
RsaI GTAC 1 cut(s) 454
RsaNI GTAC 1 cut(s) 453
SalI GTCGAC 1 cut(s) 50
SaqAI TTAA 1 cut(s) 624
SatI GCNGC 5 cut(s) 234, 237, 297, 426, 571
Sau3AI GATC 3 cut(s) 472, 511, 605
Sau96I GGNCC 4 cut(s) 238, 344, 355, 572
ScaI AGTACT 1 cut(s) 454
SchI GAGTC 1 cut(s) 428
ScrFI CCNGG 1 cut(s) 242
SfuI TTCGAA 1 cut(s) 218
SmlI CTYRAG 1 cut(s) 636
SmoI CTYRAG 1 cut(s) 636
SpeI ACTAGT 1 cut(s) 455
Sse9I AATT 3 cut(s) 60, 515, 621
SsiI CCGC 6 cut(s) 233, 236, 265, 284, 296, 570
SspI AATATT 2 cut(s) 193, 415
SspMI CTAG 3 cut(s) 180, 254, 456
StyD4I CCNGG 1 cut(s) 240
StyI CCWWGG 1 cut(s) 279
TaiI ACGT 3 cut(s) 51, 177, 501
TaqI TCGA 5 cut(s) 9, 51, 218, 540, 604
TasI AATT 3 cut(s) 60, 515, 621
TatI WGTACW 1 cut(s) 452
TauI GCSGC 4 cut(s) 236, 239, 299, 573
Tru1I TTAA 1 cut(s) 624
Tru9I TTAA 1 cut(s) 624
TseFI GTSAC 1 cut(s) 134
TseI GCWGC 1 cut(s) 425
Tsp45I GTSAC 1 cut(s) 134
VspI ATTAAT 1 cut(s) 624
XmiI GTMKAC 1 cut(s) 51
XspI CTAG 3 cut(s) 180, 254, 456
ZraI GACGTC 1 cut(s) 49
ZrmI AGTACT 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.