Rorug01G0253300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0003426
Physical Location & Seq
Reverse (-)
36272723 .. 36273085
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0253300.1

Sequence Viewer

Length: 363 bp
ATGTTTGCTCTAGGTAGGCGGCGAGTTCCTTGCTTTGTCAAATGGTCGCAGCCTCCTAGTGGCAGAATGAAACTTAGTGCCACCGGGCTATATTTCCGGTGGCAGCATACTGAGAAAGCTGCTAGTATTAGTAACTTATGGCTCTGCATGAGCATTATCTTTCTAGTTTGTCACCACATTTGTAAAGCGAATAGAGTAGCCTGTAGAGCACTCTTTGCTAAATGGTGCATGTTAGAATGCATATTCTTAGGTGAGGCGCCTGTTATCATCTCGGGTGGTTCTCTTGATACTTATTGCAATTCGGGGTTAAGGTACTATGTCCCCCCCATGTATTCTATGGTTTCATTAATGGATAAGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WRC

Protein Analysis

120

Amino Acids

13.68

Weight (kDa)

9.41

Isoelectric Point (pI)

64.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 256
AciI CCGC 1 cut(s) 19
AcyI GRCGYC 1 cut(s) 257
AfaI GTAC 1 cut(s) 314
AfiI CCNNNNNNNGG 1 cut(s) 59
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
Alw21I GWGCWC 1 cut(s) 211
Ama87I CYCGRG 1 cut(s) 271
ApeKI GCWGC 3 cut(s) 49, 103, 119
AseI ATTAAT 1 cut(s) 347
AspLEI GCGC 1 cut(s) 259
AsuC2I CCSGG 1 cut(s) 85
AsuHPI GGTGA 2 cut(s) 164, 263
AvaI CYCGRG 1 cut(s) 271
BanI GGYRCC 1 cut(s) 256
Bbv12I GWGCWC 1 cut(s) 211
BbvI GCAGC 3 cut(s) 61, 106, 115
BcgI CGANNNNNNTGC 2 cut(s) 12, 46
BcnI CCSGG 1 cut(s) 85
BfaI CTAG 4 cut(s) 11, 57, 123, 164
BfmI CTRYAG 1 cut(s) 202
BfoI RGCGCY 1 cut(s) 260
BisI GCNGC 4 cut(s) 20, 50, 104, 120
BlsI GCNGC 4 cut(s) 21, 51, 105, 121
Bme1390I CCNGG 1 cut(s) 85
BmeT110I CYCGRG 1 cut(s) 271
BmiI GGNNCC 1 cut(s) 258
BmrFI CCNGG 1 cut(s) 85
BpuMI CCSGG 1 cut(s) 85
BsaHI GRCGYC 1 cut(s) 257
BsaWI WCCGGW 1 cut(s) 96
Bsc4I CCNNNNNNNGG 1 cut(s) 59
BseLI CCNNNNNNNGG 1 cut(s) 59
BseMII CTCAG 1 cut(s) 102
BseXI GCAGC 3 cut(s) 61, 106, 115
BshNI GGYRCC 1 cut(s) 256
BsiHKAI GWGCWC 1 cut(s) 211
BsiHKCI CYCGRG 1 cut(s) 271
BsiSI CCGG 2 cut(s) 84, 97
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 305
BsmI GAATGC 1 cut(s) 242
BsoBI CYCGRG 1 cut(s) 271
Bsp1286I GDGCHC 1 cut(s) 211
BspACI CCGC 1 cut(s) 19
BspCNI CTCAG 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 258
BspT107I GGYRCC 1 cut(s) 256
BssNI GRCGYC 1 cut(s) 257
BstACI GRCGYC 1 cut(s) 257
BstAPI GCANNNNNTGC 1 cut(s) 215
BstDEI CTNAG 3 cut(s) 74, 111, 247
BstH2I RGCGCY 1 cut(s) 260
BstHHI GCGC 1 cut(s) 259
BstMWI GCNNNNNNNGC 2 cut(s) 206, 215
BstNSI RCATGY 1 cut(s) 232
BstSCI CCNGG 1 cut(s) 83
BstSFI CTRYAG 1 cut(s) 202
BstV1I GCAGC 3 cut(s) 61, 106, 115
CfoI GCGC 1 cut(s) 259
Csp6I GTAC 1 cut(s) 313
CviAII CATG 3 cut(s) 148, 229, 328
CviJI RGCY 5 cut(s) 52, 88, 119, 142, 200
CviKI_1 RGCY 5 cut(s) 52, 88, 119, 142, 200
CviQI GTAC 1 cut(s) 313
DdeI CTNAG 3 cut(s) 74, 111, 247
DinI GGCGCC 1 cut(s) 258
Eco88I CYCGRG 1 cut(s) 271
EcoT22I ATGCAT 1 cut(s) 242
EgeI GGCGCC 1 cut(s) 258
EheI GGCGCC 1 cut(s) 258
FaeI CATG 3 cut(s) 151, 232, 331
FaiI YATR 9 cut(s) 91, 108, 139, 149, 230, 242, 318, 329, 338
FaqI GGGAC 1 cut(s) 305
FatI CATG 3 cut(s) 147, 228, 327
Fnu4HI GCNGC 4 cut(s) 20, 50, 104, 120
Fsp4HI GCNGC 4 cut(s) 20, 50, 104, 120
FspBI CTAG 4 cut(s) 11, 57, 123, 164
GlaI GCGC 1 cut(s) 258
GluI GCNGC 4 cut(s) 20, 50, 104, 120
HaeII RGCGCY 1 cut(s) 260
HapII CCGG 2 cut(s) 84, 97
HhaI GCGC 1 cut(s) 259
Hin1I GRCGYC 1 cut(s) 257
Hin1II CATG 3 cut(s) 151, 232, 331
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HpaII CCGG 2 cut(s) 84, 97
HphI GGTGA 2 cut(s) 164, 263
Hpy188III TCNNGA 1 cut(s) 284
HpyCH4V TGCA 4 cut(s) 147, 228, 240, 297
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 215
HpyF3I CTNAG 3 cut(s) 74, 111, 247
Hsp92I GRCGYC 1 cut(s) 257
Hsp92II CATG 3 cut(s) 151, 232, 331
HspAI GCGC 1 cut(s) 257
KasI GGCGCC 1 cut(s) 256
LpnPI CCDG 4 cut(s) 97, 110, 214, 273
Lsp1109I GCAGC 3 cut(s) 61, 106, 115
MaeI CTAG 4 cut(s) 11, 57, 123, 164
MaeIII GTNAC 2 cut(s) 131, 170
MhlI GDGCHC 1 cut(s) 211
MluCI AATT 1 cut(s) 298
Mly113I GGCGCC 1 cut(s) 257
MnlI CCTC 2 cut(s) 63, 247
Mph1103I ATGCAT 1 cut(s) 242
MseI TTAA 2 cut(s) 308, 347
MspI CCGG 2 cut(s) 84, 97
MspR9I CCNGG 1 cut(s) 85
Mva1269I GAATGC 1 cut(s) 242
MwoI GCNNNNNNNGC 2 cut(s) 206, 215
NarI GGCGCC 1 cut(s) 257
NciI CCSGG 1 cut(s) 85
NlaIII CATG 3 cut(s) 151, 232, 331
NlaIV GGNNCC 1 cut(s) 258
NmuCI GTSAC 1 cut(s) 170
NsiI ATGCAT 1 cut(s) 242
NspI RCATGY 1 cut(s) 232
PctI GAATGC 1 cut(s) 242
PkrI GCNGC 4 cut(s) 21, 51, 105, 121
PluTI GGCGCC 1 cut(s) 260
PshBI ATTAAT 1 cut(s) 347
PspN4I GGNNCC 1 cut(s) 258
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
SaqAI TTAA 2 cut(s) 308, 347
SatI GCNGC 4 cut(s) 20, 50, 104, 120
ScrFI CCNGG 1 cut(s) 85
SduI GDGCHC 1 cut(s) 211
SetI ASST 5 cut(s) 16, 121, 253, 314, 360
SfcI CTRYAG 1 cut(s) 202
SfoI GGCGCC 1 cut(s) 258
Sse9I AATT 1 cut(s) 298
SsiI CCGC 1 cut(s) 19
SspDI GGCGCC 1 cut(s) 256
SspMI CTAG 4 cut(s) 11, 57, 123, 164
StyD4I CCNGG 1 cut(s) 83
TasI AATT 1 cut(s) 298
TauI GCSGC 1 cut(s) 22
Tru1I TTAA 2 cut(s) 308, 347
Tru9I TTAA 2 cut(s) 308, 347
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 3 cut(s) 49, 103, 119
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 2 cut(s) 83, 333
VspI ATTAAT 1 cut(s) 347
XceI RCATGY 1 cut(s) 232
XcmI CCANNNNNNNNNTGG 1 cut(s) 334
XspI CTAG 4 cut(s) 11, 57, 123, 164
Zsp2I ATGCAT 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.