RLG00000028060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0003426
Physical Location & Seq
Reverse (-)
18178887 .. 18180274
1388 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028060

Sequence Viewer

Length: 885 bp
ATGGTCAGGATCCGCAAGAACTTGAAGGTGTCGCCGCTCCAGTTCTTCCCCAACGTAGCTCCTGAGGACCTGCAGCCCCACATCTGCAAGCTGAACCAGTCTCCTTGGGATTCGAGCCCCTGCCCTTTCGACCTCCTCCTCGACTCGTCGCCGCTCCAGTTCGAAGCTGGGGAGGGTTTTATCGGAAATGGGAGCTTGGGGGATTCTATTGCAGCTGTCGAGAGCGTTGCGTCGCCGATGGATATCGACAAGGCAGAAATGGCGACCGGCGATGTGTTGGATAACGTCGACAGAGCAATTGTGAGGTGTCAGAAGAACGACGGCAGGAGCTGGCAATGCAAGAAGGAAGCGAAAGAAGGCTTCTTATTTTGTGACCATCATATCCGACGGTCGTCCTATGGTAACAGCAACGTTACTAGCAATGGCAATATTCTTCCCTCCAACTTCGTGGCTTCGAAGAAGGACACTGTGGCGGCCCCGGCCAAGACGCTAGCCGGAACCCGCCGTGCCAGACCCAAGTCGGTGAAGAAGGGGGCGTCGTCAGTGAACCCTTATGAGTTCTACTACTATTCGGGGTTCGGCCCAAAATGGGGCCGAAAGAGAGGCAAGAAAGGCGAGGTGGTGGAGGAGGAGGAGGAGGAGGAGGCCAATAATATTGAGTCAGCAGCTGGAAAGGTTGCAACTTCTTGTAGTACTAGTAGTGCTAACACCGATCCCCAACCTTCTTCACCTCACAACGTTGGTAATGGGGATCAATTGGACTACATGGAAGACGACTTCGACGACGAGGATGGGAGCGACGAAGAAGGCGGCCCTAGGAGGATGAGGAGGCCGGTGAAGGCTCGATCCTTGATGTCCATAATCAATGTAAAAGCTCAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WRC

Protein Analysis

295

Amino Acids

32.18

Weight (kDa)

5.46

Isoelectric Point (pI)

68.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRC PF08879 101 - 132 4e-09 WRC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 78
AccBSI CCGCTC 2 cut(s) 37, 154
AccI GTMKAC 1 cut(s) 288
AciI CCGC 6 cut(s) 13, 35, 152, 473, 502, 810
AclI AACGTT 2 cut(s) 411, 738
AclWI GGATC 5 cut(s) 4, 17, 707, 759, 840
AcoI YGGCCR 1 cut(s) 480
AcyI GRCGYC 1 cut(s) 536
AfaI GTAC 1 cut(s) 694
AfiI CCNNNNNNNGG 2 cut(s) 589, 590
AgsI TTSAA 1 cut(s) 25
AhlI ACTAGT 1 cut(s) 695
AluBI AGCT 8 cut(s) 59, 91, 167, 195, 215, 330, 668, 875
AluI AGCT 8 cut(s) 59, 91, 167, 195, 215, 330, 668, 875
Alw26I GTCTC 1 cut(s) 105
AlwI GGATC 5 cut(s) 4, 17, 707, 759, 840
AlwNI CAGNNNCTG 2 cut(s) 330, 668
AoxI GGCC 7 cut(s) 474, 480, 580, 592, 645, 811, 830
ApeKI GCWGC 3 cut(s) 73, 212, 665
AspA2I CCTAGG 1 cut(s) 815
AspS9I GGNCC 5 cut(s) 67, 475, 581, 592, 812
AsuC2I CCSGG 1 cut(s) 479
AsuHPI GGTGA 3 cut(s) 535, 720, 847
AsuII TTCGAA 2 cut(s) 162, 455
AsuNHI GCTAGC 1 cut(s) 490
AvaII GGWCC 1 cut(s) 67
AvrII CCTAGG 1 cut(s) 815
AxyI CCTNAGG 1 cut(s) 63
BamHI GGATCC 1 cut(s) 9
BanII GRGCYC 1 cut(s) 119
BbsI GAAGAC 1 cut(s) 777
BbvI GCAGC 3 cut(s) 85, 224, 677
BccI CCATC 3 cut(s) 232, 384, 785
BceAI ACGGC 2 cut(s) 337, 489
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BcnI CCSGG 1 cut(s) 479
BcoDI GTCTC 1 cut(s) 105
BcuI ACTAGT 1 cut(s) 695
BfaI CTAG 4 cut(s) 417, 491, 696, 816
BfmI CTRYAG 1 cut(s) 71
BfuAI ACCTGC 1 cut(s) 78
BisI GCNGC 7 cut(s) 35, 74, 152, 213, 474, 666, 811
BlnI CCTAGG 1 cut(s) 815
BlsI GCNGC 7 cut(s) 36, 75, 153, 214, 475, 667, 812
BmcAI AGTACT 1 cut(s) 694
Bme1390I CCNGG 1 cut(s) 479
Bme18I GGWCC 1 cut(s) 67
BmgT120I GGNCC 5 cut(s) 67, 475, 581, 592, 812
BmiI GGNNCC 4 cut(s) 11, 477, 499, 593
BmrFI CCNGG 1 cut(s) 479
BmtI GCTAGC 1 cut(s) 494
BoxI GACNNNNGTC 2 cut(s) 391, 517
BpiI GAAGAC 1 cut(s) 777
BpmI CTGGAG 2 cut(s) 23, 140
Bpu14I TTCGAA 2 cut(s) 162, 455
BpuEI CTTGAG 1 cut(s) 861
BpuMI CCSGG 1 cut(s) 479
BsaBI GATNNNNATC 1 cut(s) 242
BsaHI GRCGYC 1 cut(s) 536
BsaJI CCNNGG 3 cut(s) 104, 477, 815
Bsc4I CCNNNNNNNGG 2 cut(s) 589, 590
Bse118I RCCGGY 2 cut(s) 266, 832
Bse1I ACTGG 3 cut(s) 40, 97, 157
Bse21I CCTNAGG 1 cut(s) 63
Bse3DI GCAATG 2 cut(s) 341, 427
Bse8I GATNNNNATC 1 cut(s) 242
BseDI CCNNGG 3 cut(s) 104, 477, 815
BseGI GGATG 2 cut(s) 796, 828
BseJI GATNNNNATC 1 cut(s) 242
BseLI CCNNNNNNNGG 2 cut(s) 589, 590
BseMI GCAATG 2 cut(s) 341, 427
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 3 cut(s) 40, 97, 157
BseRI GAGGAG 9 cut(s) 125, 128, 641, 644, 647, 650, 653, 656, 841
BseXI GCAGC 3 cut(s) 85, 224, 677
BseYI CCCAGC 1 cut(s) 167
Bsh1285I CGRYCG 2 cut(s) 267, 392
BshFI GGCC 7 cut(s) 476, 482, 582, 594, 647, 813, 832
BsiEI CGRYCG 2 cut(s) 267, 392
BsiSI CCGG 4 cut(s) 267, 479, 495, 833
BslI CCNNNNNNNGG 2 cut(s) 589, 590
BsmAI GTCTC 1 cut(s) 105
BsnI GGCC 7 cut(s) 476, 482, 582, 594, 647, 813, 832
Bsp119I TTCGAA 2 cut(s) 162, 455
Bsp1286I GDGCHC 1 cut(s) 119
Bsp143I GATC 4 cut(s) 9, 712, 751, 845
BspACI CCGC 6 cut(s) 13, 35, 152, 473, 502, 810
BspANI GGCC 7 cut(s) 476, 482, 582, 594, 647, 813, 832
BspCNI CTCAG 1 cut(s) 55
BspLI GGNNCC 4 cut(s) 11, 477, 499, 593
BspMAI CTGCAG 1 cut(s) 75
BspMI ACCTGC 1 cut(s) 78
BspOI GCTAGC 1 cut(s) 494
BspPI GGATC 5 cut(s) 4, 17, 707, 759, 840
BspT104I TTCGAA 2 cut(s) 162, 455
BsrBI CCGCTC 2 cut(s) 37, 154
BsrDI GCAATG 2 cut(s) 341, 427
BsrFI RCCGGY 2 cut(s) 266, 832
BsrI ACTGG 3 cut(s) 40, 97, 157
BssAI RCCGGY 2 cut(s) 266, 832
BssECI CCNNGG 3 cut(s) 104, 477, 815
BssMI GATC 4 cut(s) 9, 712, 751, 845
BssNI GRCGYC 1 cut(s) 536
BssT1I CCWWGG 2 cut(s) 104, 815
Bst4CI ACNGT 2 cut(s) 390, 469
BstACI GRCGYC 1 cut(s) 536
BstBI TTCGAA 2 cut(s) 162, 455
BstC8I GCNNGC 3 cut(s) 89, 332, 492
BstDEI CTNAG 1 cut(s) 63
BstF5I GGATG 2 cut(s) 796, 828
BstKTI GATC 4 cut(s) 12, 715, 754, 848
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 4 cut(s) 9, 712, 751, 845
BstMCI CGRYCG 2 cut(s) 267, 392
BstMWI GCNNNNNNNGC 4 cut(s) 260, 336, 479, 612
BstPAI GACNNNNGTC 2 cut(s) 391, 517
BstSCI CCNGG 1 cut(s) 477
BstSFI CTRYAG 1 cut(s) 71
BstV1I GCAGC 3 cut(s) 85, 224, 677
BstV2I GAAGAC 1 cut(s) 777
BstX2I RGATCY 1 cut(s) 9
BstXI CCANNNNNNTGG 1 cut(s) 448
BstYI RGATCY 1 cut(s) 9
Bsu36I CCTNAGG 1 cut(s) 63
BsuRI GGCC 7 cut(s) 476, 482, 582, 594, 647, 813, 832
BtgZI GCGATG 1 cut(s) 285
BtsCI GGATG 2 cut(s) 796, 828
BtsIMutI CAGTG 2 cut(s) 465, 549
BveI ACCTGC 1 cut(s) 78
Cac8I GCNNGC 3 cut(s) 89, 332, 492
CaiI CAGNNNCTG 2 cut(s) 330, 668
Cfr10I RCCGGY 2 cut(s) 266, 832
Cfr13I GGNCC 5 cut(s) 67, 475, 581, 592, 812
CseI GACGC 3 cut(s) 219, 496, 525
Csp6I GTAC 1 cut(s) 693
CviAII CATG 1 cut(s) 766
CviQI GTAC 1 cut(s) 693
DdeI CTNAG 1 cut(s) 63
DpnI GATC 4 cut(s) 11, 714, 753, 847
DpnII GATC 4 cut(s) 9, 712, 751, 845
EaeI YGGCCR 1 cut(s) 480
Eco130I CCWWGG 2 cut(s) 104, 815
Eco24I GRGCYC 1 cut(s) 119
Eco32I GATATC 1 cut(s) 244
Eco47I GGWCC 1 cut(s) 67
Eco81I CCTNAGG 1 cut(s) 63
EcoO109I RGGNCCY 1 cut(s) 67
EcoRV GATATC 1 cut(s) 244
EcoT14I CCWWGG 2 cut(s) 104, 815
EcoT38I GRGCYC 1 cut(s) 119
ErhI CCWWGG 2 cut(s) 104, 815
FaeI CATG 1 cut(s) 769
FaiI YATR 5 cut(s) 381, 399, 555, 767, 860
FatI CATG 1 cut(s) 765
FauI CCCGC 1 cut(s) 509
FblI GTMKAC 1 cut(s) 288
Fnu4HI GCNGC 7 cut(s) 35, 74, 152, 213, 474, 666, 811
FokI GGATG 2 cut(s) 803, 835
FriOI GRGCYC 1 cut(s) 119
Fsp4HI GCNGC 7 cut(s) 35, 74, 152, 213, 474, 666, 811
FspBI CTAG 4 cut(s) 417, 491, 696, 816
GluI GCNGC 7 cut(s) 35, 74, 152, 213, 474, 666, 811
GsaI CCCAGC 1 cut(s) 171
GsuI CTGGAG 2 cut(s) 23, 140
HaeIII GGCC 7 cut(s) 476, 482, 582, 594, 647, 813, 832
HapII CCGG 4 cut(s) 267, 479, 495, 833
HgaI GACGC 3 cut(s) 219, 496, 525
Hin1I GRCGYC 1 cut(s) 536
Hin1II CATG 1 cut(s) 769
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HinfI GANTC 4 cut(s) 110, 143, 203, 659
HpaII CCGG 4 cut(s) 267, 479, 495, 833
HphI GGTGA 3 cut(s) 535, 720, 847
Hpy166II GTNNAC 2 cut(s) 289, 547
Hpy188I TCNGA 3 cut(s) 185, 312, 386
Hpy188III TCNNGA 4 cut(s) 7, 62, 220, 878
Hpy8I GTNNAC 2 cut(s) 289, 547
Hpy99I CGWCG 9 cut(s) 151, 235, 290, 323, 390, 541, 785, 788, 803
HpyAV CCTTC 8 cut(s) 19, 337, 350, 454, 523, 732, 800, 832
HpyCH4III ACNGT 2 cut(s) 390, 469
HpyCH4IV ACGT 4 cut(s) 54, 285, 411, 738
HpyCH4V TGCA 5 cut(s) 73, 87, 212, 339, 680
HpyF10VI GCNNNNNNNGC 4 cut(s) 260, 336, 479, 612
HpyF3I CTNAG 1 cut(s) 63
HpySE526I ACGT 4 cut(s) 54, 285, 411, 738
Hsp92I GRCGYC 1 cut(s) 536
Hsp92II CATG 1 cut(s) 769
Kzo9I GATC 4 cut(s) 9, 712, 751, 845
LmnI GCTCC 6 cut(s) 42, 64, 159, 192, 327, 795
Lsp1109I GCAGC 3 cut(s) 85, 224, 677
MaeI CTAG 4 cut(s) 417, 491, 696, 816
MaeII ACGT 4 cut(s) 54, 285, 411, 738
MaeIII GTNAC 3 cut(s) 371, 401, 412
MalI GATC 4 cut(s) 11, 714, 753, 847
MbiI CCGCTC 2 cut(s) 37, 154
MboI GATC 4 cut(s) 9, 712, 751, 845
MboII GAAGA 8 cut(s) 37, 325, 425, 469, 538, 717, 782, 815
MfeI CAATTG 2 cut(s) 297, 755
MflI RGATCY 1 cut(s) 9
MhlI GDGCHC 1 cut(s) 119
MluCI AATT 2 cut(s) 297, 755
MlyI GAGTC 2 cut(s) 137, 668
MmeI TCCRAC 3 cut(s) 258, 409, 465
MspA1I CMGCKG 2 cut(s) 215, 668
MspI CCGG 4 cut(s) 267, 479, 495, 833
MspR9I CCNGG 1 cut(s) 479
MunI CAATTG 2 cut(s) 297, 755
MwoI GCNNNNNNNGC 4 cut(s) 260, 336, 479, 612
NciI CCSGG 1 cut(s) 479
NdeII GATC 4 cut(s) 9, 712, 751, 845
NheI GCTAGC 1 cut(s) 490
NlaIII CATG 1 cut(s) 769
NlaIV GGNNCC 4 cut(s) 11, 477, 499, 593
NmuCI GTSAC 1 cut(s) 371
NspV TTCGAA 2 cut(s) 162, 455
PcsI WCGNNNNNNNCGW 1 cut(s) 780
PfeI GAWTC 2 cut(s) 110, 203
PkrI GCNGC 7 cut(s) 36, 75, 153, 214, 475, 667, 812
PleI GAGTC 2 cut(s) 137, 667
PpsI GAGTC 2 cut(s) 137, 667
PpuMI RGGWCCY 1 cut(s) 67
PshAI GACNNNNGTC 2 cut(s) 391, 517
Psp1406I AACGTT 2 cut(s) 411, 738
Psp5II RGGWCCY 1 cut(s) 67
PspFI CCCAGC 1 cut(s) 167
PspN4I GGNNCC 4 cut(s) 11, 477, 499, 593
PspPI GGNCC 5 cut(s) 67, 475, 581, 592, 812
PspPPI RGGWCCY 1 cut(s) 67
PstI CTGCAG 1 cut(s) 75
PstNI CAGNNNCTG 2 cut(s) 330, 668
PsuI RGATCY 1 cut(s) 9
PvuII CAGCTG 2 cut(s) 215, 668
RsaI GTAC 1 cut(s) 694
RsaNI GTAC 1 cut(s) 693
SalI GTCGAC 1 cut(s) 287
SatI GCNGC 7 cut(s) 35, 74, 152, 213, 474, 666, 811
Sau3AI GATC 4 cut(s) 9, 712, 751, 845
Sau96I GGNCC 5 cut(s) 67, 475, 581, 592, 812
ScaI AGTACT 1 cut(s) 694
SchI GAGTC 2 cut(s) 137, 668
ScrFI CCNGG 1 cut(s) 479
SduI GDGCHC 1 cut(s) 119
SfcI CTRYAG 1 cut(s) 71
SfuI TTCGAA 2 cut(s) 162, 455
SinI GGWCC 1 cut(s) 67
SmlI CTYRAG 1 cut(s) 876
SmoI CTYRAG 1 cut(s) 876
SpeI ACTAGT 1 cut(s) 695
Sse9I AATT 2 cut(s) 297, 755
SsiI CCGC 6 cut(s) 13, 35, 152, 473, 502, 810
SspI AATATT 2 cut(s) 430, 655
SspMI CTAG 4 cut(s) 417, 491, 696, 816
StyD4I CCNGG 1 cut(s) 477
StyI CCWWGG 2 cut(s) 104, 815
TaaI ACNGT 2 cut(s) 390, 469
TaiI ACGT 4 cut(s) 57, 288, 414, 741
TasI AATT 2 cut(s) 297, 755
TatI WGTACW 1 cut(s) 692
TauI GCSGC 4 cut(s) 37, 154, 476, 813
TfiI GAWTC 2 cut(s) 110, 203
TscAI CASTG 2 cut(s) 472, 549
TseFI GTSAC 1 cut(s) 371
TseI GCWGC 3 cut(s) 73, 212, 665
Tsp45I GTSAC 1 cut(s) 371
TspRI CASTG 2 cut(s) 472, 549
VpaK11BI GGWCC 1 cut(s) 67
XcmI CCANNNNNNNNNTGG 1 cut(s) 164
XmaJI CCTAGG 1 cut(s) 815
XmiI GTMKAC 1 cut(s) 288
XspI CTAG 4 cut(s) 417, 491, 696, 816
ZrmI AGTACT 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.