Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003426

Physical Location & Seq

Genomic Coordinates Reverse (-)

36227559 .. 36228378

Gene Structure 820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0253100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGCAATCAGTACTCCTCTTGTTGTGATAGCCTTTTTCGTTGTTTTTCCGAGCATGGTTTTGGCAAAACAGTATGTTGTTGGAGATGATGAAGGCTGGGATGGTAATGTTGATTACCAAGCGTGGGCAGATGACAAGACTTTCAAACTTGGAGATGTTTTAATATTCAAATACGATGCTGGTAGCCATAACGTTGCTCAAGCGTTTAATGCTGATGGCTATGACAGTTGTACTTCATCACCAGAATTGGGGAGCCTTGTGATCGGCTCAGGTTATGTATGCACATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRC

Protein Analysis

96

Amino Acids

10.32

Weight (kDa)

4.05

Isoelectric Point (pI)

34.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	33 - 83	6.6e-13	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00310 AT4G00310
fragaria_vesca	FvH4_7g14870 FvH4_7g14870 FvH4_7g14870 FvH4_7g14880 FvH4_7g14980 FvH4_7g14980 FvH4_7g14980
malus_domestica	MD01G1067400.v1.1 MD07G1133500.v1.1
prunus_persica	Prupe.2G173800_v2.0.a1
pyrus_communis	pycom01g09650 pycom07g13110
rosa_chinensis	RchiOBHm_Chr1g0357021
rosa_laevigata	RLG00000028060 RLG00000028080
rosa_multiflora	Rmu_sc0000166.1_g000038 Rmu_sc0002572.1_g000002 Rmu_sc0003212.1_g000001
rosa_roxburghii	Rroxscaffold_4G00299120 Rroxscaffold_4G00299300 Rroxscaffold_4G00299330
rosa_rugosa	Rorug01G0251500 Rorug01G0253100 Rorug01G0253200 Rorug01G0253300
rosa_samantha	Rh1AG265800 Rh1AG267300 Rh1BG233400 Rh1BG235100 Rh1CG249300 Rh1CG251300 Rh1DG260800 Rh1DG262500
rosa_wichuraiana	Rw1G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	192
AfaI	GTAC	2 cut(s)	13, 232
AfiI	CCNNNNNNNGG	2 cut(s)	124, 248
AgsI	TTSAA	2 cut(s)	145, 169
AsuHPI	GGTGA	1 cut(s)	231
BccI	CCATC	2 cut(s)	95, 209
BmcAI	AGTACT	1 cut(s)	13
BmiI	GGNNCC	1 cut(s)	254
BmsI	GCATC	1 cut(s)	166
Bpu10I	CCTNAGC	1 cut(s)	268
BpuEI	CTTGAG	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 248
BseGI	GGATG	1 cut(s)	106
BseLI	CCNNNNNNNGG	2 cut(s)	124, 248
BseMII	CTCAG	1 cut(s)	282
BseRI	GAGGAG	1 cut(s)	6
BseYI	CCCAGC	1 cut(s)	96
BslI	CCNNNNNNNGG	2 cut(s)	124, 248
Bsp143I	GATC	1 cut(s)	261
BspCNI	CTCAG	1 cut(s)	281
BspLI	GGNNCC	1 cut(s)	254
BssMI	GATC	1 cut(s)	261
Bst4CI	ACNGT	2 cut(s)	72, 227
BstDEI	CTNAG	1 cut(s)	268
BstF5I	GGATG	1 cut(s)	106
BstKTI	GATC	1 cut(s)	264
BstMBI	GATC	1 cut(s)	261
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BtsCI	GGATG	1 cut(s)	106
Csp6I	GTAC	2 cut(s)	12, 231
CviAII	CATG	1 cut(s)	55
CviJI	RGCY	6 cut(s)	32, 96, 186, 219, 255, 267
CviKI_1	RGCY	6 cut(s)	32, 96, 186, 219, 255, 267
CviQI	GTAC	2 cut(s)	12, 231
DdeI	CTNAG	1 cut(s)	268
DpnI	GATC	1 cut(s)	263
DpnII	GATC	1 cut(s)	261
FaeI	CATG	1 cut(s)	58
FaiI	YATR	6 cut(s)	56, 75, 189, 222, 276, 280
FatI	CATG	1 cut(s)	54
FokI	GGATG	1 cut(s)	113
GsaI	CCCAGC	1 cut(s)	100
Hin1II	CATG	1 cut(s)	58
HphI	GGTGA	1 cut(s)	231
Hpy188I	TCNGA	1 cut(s)	51
HpyAV	CCTTC	1 cut(s)	86
HpyCH4III	ACNGT	2 cut(s)	72, 227
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	1 cut(s)	282
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpyF3I	CTNAG	1 cut(s)	268
HpySE526I	ACGT	1 cut(s)	192
Hsp92II	CATG	1 cut(s)	58
Kzo9I	GATC	1 cut(s)	261
LmnI	GCTCC	1 cut(s)	252
LpnPI	CCDG	4 cut(s)	82, 165, 255, 255
LweI	GCATC	1 cut(s)	166
MaeII	ACGT	1 cut(s)	192
MalI	GATC	1 cut(s)	263
MboI	GATC	1 cut(s)	261
MluCI	AATT	1 cut(s)	245
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	1 cut(s)	27
MseI	TTAA	2 cut(s)	161, 207
MwoI	GCNNNNNNNGC	1 cut(s)	209
NdeII	GATC	1 cut(s)	261
NlaIII	CATG	1 cut(s)	58
NlaIV	GGNNCC	1 cut(s)	254
Psp1406I	AACGTT	1 cut(s)	192
PspFI	CCCAGC	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	254
RsaI	GTAC	2 cut(s)	13, 232
RsaNI	GTAC	2 cut(s)	12, 231
SaqAI	TTAA	2 cut(s)	161, 207
Sau3AI	GATC	1 cut(s)	261
ScaI	AGTACT	1 cut(s)	13
SetI	ASST	2 cut(s)	195, 274
SfaNI	GCATC	1 cut(s)	166
SmlI	CTYRAG	1 cut(s)	198
SmoI	CTYRAG	1 cut(s)	198
Sse9I	AATT	1 cut(s)	245
SspI	AATATT	1 cut(s)	165
TaaI	ACNGT	2 cut(s)	72, 227
TaiI	ACGT	1 cut(s)	195
TasI	AATT	1 cut(s)	245
TatI	WGTACW	2 cut(s)	11, 230
Tru1I	TTAA	2 cut(s)	161, 207
Tru9I	TTAA	2 cut(s)	161, 207
TspDTI	ATGAA	2 cut(s)	105, 225
ZrmI	AGTACT	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.