FvH4_7g14870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0003426
Physical Location & Seq
Reverse (-)
13028318 .. 13030036
1719 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g14870.t3

Sequence Viewer

Length: 861 bp
ATGGTGAGGATCCGCAAGAACTCGAAGCTCTCCCCTCTCCTCTTCTGCTCGCAACCTTCAGCTCTTGACGACCTGCAGCCGCGCGTGTGCAAGCTCAACCAGTCTCCTTGGGATGCGAATCATGTGATTGTTCCTTCACTCCTCGACTCCTCACACCCGTTTGAAGCTGAGGATGGCTTATACGTCAATGGGAGCTTGGGTTCTTCTATTGTAGCTGAGGAAAGCGTTGCATCGCCCATGGATATCGATGACAAGCCAGACACGGCGGCGGTCCATGGCATTGTGTCTACCGACGGCAACGGGTTTCTTCGGTGTCATAGGAACAACGGCAAGAGCTGGCAATGCAACACGGAAGCGAGTGAAGGCTTGCCACATTGTGAGAACCACCGTAAACTCAAGAGCCGAAGGAATGTTAATTATTGTATCTACACAAATGAAAACAACAAGAGCAACACTACTAGCAATGGCACTGCGAACTCCTTGCCATCAAAGAAGACCATCGCCGCGACAAAGGCGCTTCCGGGGGCGAAAAAGGGGGAGGCGGCGTTGAAGAAACCGTACGAGTTCTACTACTATTCGGGGTTCAACCCGCGGTGGGGGAGGAATAGAGGCATTAGCAAACACAAAGAAGAGGCTAAAGTTGCTGCTGCTGAAAATGTTGGTGCTACTCCCACTACATCTTGTACCACTACTCAGATTAGCAATCCCGAATCACCTCCCTCGCACAAAATTGATAATGGGGATCAATTGGATTATATCGAGGATGATTTCGATGATGAGTACGAGGATGGGGGCGGAGAATGTGGCCGGAAGCGGATGAGGAGGCATGTGAAGGCTAGATCTTTGAAGTCCCTAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WRC

Protein Analysis

287

Amino Acids

31.52

Weight (kDa)

8.05

Isoelectric Point (pI)

45.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRC PF08879 24 - 57 1.2e-07 WRC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 81
AccI GTMKAC 1 cut(s) 287
AccII CGCG 4 cut(s) 82, 84, 506, 592
AclWI GGATC 3 cut(s) 4, 17, 750
AcoI YGGCCR 1 cut(s) 805
AcuI CTGAAG 1 cut(s) 42
AdeI CACNNNGTG 1 cut(s) 377
AfaI GTAC 3 cut(s) 560, 685, 782
AfiI CCNNNNNNNGG 2 cut(s) 595, 596
AgsI TTSAA 4 cut(s) 164, 550, 586, 847
AloI GAACNNNNNNTCC 2 cut(s) 184, 216
AluBI AGCT 7 cut(s) 28, 62, 94, 167, 195, 215, 336
AluI AGCT 7 cut(s) 28, 62, 94, 167, 195, 215, 336
Alw26I GTCTC 1 cut(s) 108
AlwI GGATC 3 cut(s) 4, 17, 750
AoxI GGCC 1 cut(s) 805
ApeKI GCWGC 3 cut(s) 76, 644, 647
AspLEI GCGC 2 cut(s) 84, 517
AspS9I GGNCC 1 cut(s) 271
AsuC2I CCSGG 1 cut(s) 522
AsuHPI GGTGA 2 cut(s) 16, 705
AvaII GGWCC 1 cut(s) 271
BamHI GGATCC 1 cut(s) 9
BarI GAAGNNNNNNTAC 2 cut(s) 542, 574
BbsI GAAGAC 1 cut(s) 500
BbvCI CCTCAGC 2 cut(s) 168, 216
BbvI GCAGC 3 cut(s) 88, 631, 634
BccI CCATC 4 cut(s) 167, 493, 506, 782
BceAI ACGGC 3 cut(s) 279, 310, 343
BcgI CGANNNNNNTGC 2 cut(s) 463, 497
BcnI CCSGG 1 cut(s) 522
BcoDI GTCTC 1 cut(s) 108
BfaI CTAG 2 cut(s) 459, 837
BfmI CTRYAG 1 cut(s) 74
BfoI RGCGCY 1 cut(s) 518
BfuAI ACCTGC 1 cut(s) 81
BglII AGATCT 1 cut(s) 839
BisI GCNGC 7 cut(s) 77, 80, 267, 504, 543, 645, 648
BlsI GCNGC 7 cut(s) 78, 81, 268, 505, 544, 646, 649
Bme1390I CCNGG 1 cut(s) 522
Bme18I GGWCC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 271
BmiI GGNNCC 1 cut(s) 11
BmrFI CCNGG 1 cut(s) 522
BmsI GCATC 2 cut(s) 103, 239
BpiI GAAGAC 1 cut(s) 500
Bpu10I CCTNAGC 2 cut(s) 168, 216
BpuEI CTTGAG 1 cut(s) 380
BpuMI CCSGG 1 cut(s) 522
Bsa29I ATCGAT 1 cut(s) 246
BsaBI GATNNNNATC 1 cut(s) 117
BsaJI CCNNGG 5 cut(s) 107, 237, 274, 521, 590
BsaXI ACNNNNNCTCC 4 cut(s) 184, 214, 530, 560
Bsc4I CCNNNNNNNGG 2 cut(s) 595, 596
Bse1I ACTGG 1 cut(s) 100
Bse3DI GCAATG 2 cut(s) 347, 469
Bse8I GATNNNNATC 1 cut(s) 117
BseCI ATCGAT 1 cut(s) 246
BseDI CCNNGG 5 cut(s) 107, 237, 274, 521, 590
BseGI GGATG 5 cut(s) 118, 178, 769, 793, 822
BseJI GATNNNNATC 1 cut(s) 117
BseLI CCNNNNNNNGG 2 cut(s) 595, 596
BseMI GCAATG 2 cut(s) 347, 469
BseMII CTCAG 3 cut(s) 159, 207, 707
BseNI ACTGG 1 cut(s) 100
BseRI GAGGAG 4 cut(s) 29, 131, 139, 835
BseXI GCAGC 3 cut(s) 88, 631, 634
Bsh1236I CGCG 4 cut(s) 82, 84, 506, 592
BshFI GGCC 1 cut(s) 807
BshVI ATCGAT 1 cut(s) 246
BsiSI CCGG 2 cut(s) 521, 808
BsiWI CGTACG 1 cut(s) 558
BslFI GGGAC 1 cut(s) 835
BslI CCNNNNNNNGG 2 cut(s) 595, 596
BsmAI GTCTC 1 cut(s) 108
BsmFI GGGAC 1 cut(s) 835
BsnI GGCC 1 cut(s) 807
Bsp143I GATC 3 cut(s) 9, 742, 839
Bsp19I CCATGG 2 cut(s) 237, 274
BspANI GGCC 1 cut(s) 807
BspCNI CTCAG 3 cut(s) 160, 208, 706
BspDI ATCGAT 1 cut(s) 246
BspFNI CGCG 4 cut(s) 82, 84, 506, 592
BspLI GGNNCC 1 cut(s) 11
BspMAI CTGCAG 1 cut(s) 78
BspMI ACCTGC 1 cut(s) 81
BspPI GGATC 3 cut(s) 4, 17, 750
BsrDI GCAATG 2 cut(s) 347, 469
BsrI ACTGG 1 cut(s) 100
BssECI CCNNGG 5 cut(s) 107, 237, 274, 521, 590
BssMI GATC 3 cut(s) 9, 742, 839
BssT1I CCWWGG 3 cut(s) 107, 237, 274
Bst4CI ACNGT 2 cut(s) 389, 558
Bst6I CTCTTC 2 cut(s) 47, 624
BstC8I GCNNGC 4 cut(s) 50, 92, 338, 368
BstDEI CTNAG 3 cut(s) 168, 216, 693
BstDSI CCRYGG 3 cut(s) 237, 274, 590
BstF5I GGATG 5 cut(s) 118, 178, 769, 793, 822
BstFNI CGCG 4 cut(s) 82, 84, 506, 592
BstH2I RGCGCY 1 cut(s) 518
BstHHI GCGC 2 cut(s) 84, 517
BstKTI GATC 3 cut(s) 12, 745, 842
BstMAI GTCTC 1 cut(s) 108
BstMBI GATC 3 cut(s) 9, 742, 839
BstMWI GCNNNNNNNGC 3 cut(s) 342, 512, 641
BstNSI RCATGY 1 cut(s) 830
BstSCI CCNGG 1 cut(s) 520
BstSFI CTRYAG 1 cut(s) 74
BstUI CGCG 4 cut(s) 82, 84, 506, 592
BstV1I GCAGC 3 cut(s) 88, 631, 634
BstV2I GAAGAC 1 cut(s) 500
BstX2I RGATCY 2 cut(s) 9, 839
BstYI RGATCY 2 cut(s) 9, 839
Bsu15I ATCGAT 1 cut(s) 246
BsuRI GGCC 1 cut(s) 807
BsuTUI ATCGAT 1 cut(s) 246
BtgI CCRYGG 3 cut(s) 237, 274, 590
BtgZI GCGATG 2 cut(s) 216, 484
BtsCI GGATG 5 cut(s) 118, 178, 769, 793, 822
BtsI GCAGTG 1 cut(s) 468
BtsIMutI CAGTG 1 cut(s) 468
BveI ACCTGC 1 cut(s) 81
Cac8I GCNNGC 4 cut(s) 50, 92, 338, 368
CfoI GCGC 2 cut(s) 84, 517
Cfr13I GGNCC 1 cut(s) 271
Cfr42I CCGCGG 1 cut(s) 593
ClaI ATCGAT 1 cut(s) 246
Csp6I GTAC 3 cut(s) 559, 684, 781
CviAII CATG 4 cut(s) 122, 238, 275, 827
CviQI GTAC 3 cut(s) 559, 684, 781
DdeI CTNAG 3 cut(s) 168, 216, 693
DpnI GATC 3 cut(s) 11, 744, 841
DpnII GATC 3 cut(s) 9, 742, 839
DraIII CACNNNGTG 1 cut(s) 377
EaeI YGGCCR 1 cut(s) 805
Eam1104I CTCTTC 2 cut(s) 47, 624
EarI CTCTTC 2 cut(s) 47, 624
EciI GGCGGA 1 cut(s) 810
Eco130I CCWWGG 3 cut(s) 107, 237, 274
Eco32I GATATC 1 cut(s) 244
Eco47I GGWCC 1 cut(s) 271
Eco57I CTGAAG 1 cut(s) 42
EcoRV GATATC 1 cut(s) 244
EcoT14I CCWWGG 3 cut(s) 107, 237, 274
ErhI CCWWGG 3 cut(s) 107, 237, 274
FaeI CATG 4 cut(s) 125, 241, 278, 830
FaiI YATR 7 cut(s) 123, 181, 239, 276, 318, 756, 828
FaqI GGGAC 1 cut(s) 835
FatI CATG 4 cut(s) 121, 237, 274, 826
FauI CCCGC 1 cut(s) 597
FblI GTMKAC 1 cut(s) 287
Fnu4HI GCNGC 7 cut(s) 77, 80, 267, 504, 543, 645, 648
FokI GGATG 5 cut(s) 125, 185, 776, 800, 829
Fsp4HI GCNGC 7 cut(s) 77, 80, 267, 504, 543, 645, 648
FspBI CTAG 2 cut(s) 459, 837
GlaI GCGC 2 cut(s) 83, 516
GluI GCNGC 7 cut(s) 77, 80, 267, 504, 543, 645, 648
HaeII RGCGCY 1 cut(s) 518
HaeIII GGCC 1 cut(s) 807
HapII CCGG 2 cut(s) 521, 808
HhaI GCGC 2 cut(s) 84, 517
Hin1II CATG 4 cut(s) 125, 241, 278, 830
Hin6I GCGC 2 cut(s) 82, 515
HinP1I GCGC 2 cut(s) 82, 515
HinfI GANTC 3 cut(s) 118, 146, 710
HpaII CCGG 2 cut(s) 521, 808
HphI GGTGA 2 cut(s) 16, 705
Hpy166II GTNNAC 2 cut(s) 288, 392
Hpy188I TCNGA 1 cut(s) 696
Hpy188III TCNNGA 3 cut(s) 65, 397, 707
Hpy8I GTNNAC 2 cut(s) 288, 392
Hpy99I CGWCG 1 cut(s) 296
HpyAV CCTTC 5 cut(s) 66, 144, 356, 399, 826
HpyCH4III ACNGT 2 cut(s) 389, 558
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 4 cut(s) 76, 90, 230, 345
HpyF10VI GCNNNNNNNGC 3 cut(s) 342, 512, 641
HpyF3I CTNAG 3 cut(s) 168, 216, 693
HpySE526I ACGT 1 cut(s) 183
Hsp92II CATG 4 cut(s) 125, 241, 278, 830
HspAI GCGC 2 cut(s) 82, 515
KspI CCGCGG 1 cut(s) 593
Kzo9I GATC 3 cut(s) 9, 742, 839
LmnI GCTCC 1 cut(s) 192
LpnPI CCDG 6 cut(s) 86, 113, 270, 322, 534, 821
Lsp1109I GCAGC 3 cut(s) 88, 631, 634
LweI GCATC 2 cut(s) 103, 239
MaeI CTAG 2 cut(s) 459, 837
MaeII ACGT 1 cut(s) 183
MalI GATC 3 cut(s) 11, 744, 841
MboI GATC 3 cut(s) 9, 742, 839
MboII GAAGA 6 cut(s) 34, 195, 299, 505, 562, 641
MfeI CAATTG 1 cut(s) 746
MflI RGATCY 2 cut(s) 9, 839
MluCI AATT 3 cut(s) 415, 729, 746
MlyI GAGTC 1 cut(s) 140
MseI TTAA 1 cut(s) 414
MspA1I CMGCKG 1 cut(s) 592
MspI CCGG 2 cut(s) 521, 808
MspR9I CCNGG 1 cut(s) 522
MunI CAATTG 1 cut(s) 746
MvnI CGCG 4 cut(s) 82, 84, 506, 592
MwoI GCNNNNNNNGC 3 cut(s) 342, 512, 641
NciI CCSGG 1 cut(s) 522
NcoI CCATGG 2 cut(s) 237, 274
NdeII GATC 3 cut(s) 9, 742, 839
NlaIII CATG 4 cut(s) 125, 241, 278, 830
NlaIV GGNNCC 1 cut(s) 11
NspI RCATGY 1 cut(s) 830
PfeI GAWTC 2 cut(s) 118, 710
Pfl23II CGTACG 1 cut(s) 558
PkrI GCNGC 7 cut(s) 78, 81, 268, 505, 544, 646, 649
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
PspLI CGTACG 1 cut(s) 558
PspN4I GGNNCC 1 cut(s) 11
PspPI GGNCC 1 cut(s) 271
PstI CTGCAG 1 cut(s) 78
PsuI RGATCY 2 cut(s) 9, 839
RsaI GTAC 3 cut(s) 560, 685, 782
RsaNI GTAC 3 cut(s) 559, 684, 781
SacII CCGCGG 1 cut(s) 593
SaqAI TTAA 1 cut(s) 414
SatI GCNGC 7 cut(s) 77, 80, 267, 504, 543, 645, 648
Sau3AI GATC 3 cut(s) 9, 742, 839
Sau96I GGNCC 1 cut(s) 271
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 1 cut(s) 522
SfaNI GCATC 2 cut(s) 103, 239
SfcI CTRYAG 1 cut(s) 74
Sfr303I CCGCGG 1 cut(s) 593
SgrBI CCGCGG 1 cut(s) 593
SinI GGWCC 1 cut(s) 271
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
Sse9I AATT 3 cut(s) 415, 729, 746
SspMI CTAG 2 cut(s) 459, 837
StyD4I CCNGG 1 cut(s) 520
StyI CCWWGG 3 cut(s) 107, 237, 274
TaaI ACNGT 2 cut(s) 389, 558
TaiI ACGT 1 cut(s) 186
TaqI TCGA 5 cut(s) 23, 144, 246, 759, 771
TasI AATT 3 cut(s) 415, 729, 746
TauI GCSGC 4 cut(s) 82, 269, 506, 545
TfiI GAWTC 2 cut(s) 118, 710
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TscAI CASTG 1 cut(s) 475
TseI GCWGC 3 cut(s) 76, 644, 647
TspDTI ATGAA 1 cut(s) 450
TspGWI ACGGA 1 cut(s) 365
TspRI CASTG 1 cut(s) 475
VpaK11BI GGWCC 1 cut(s) 271
XceI RCATGY 1 cut(s) 830
XmiI GTMKAC 1 cut(s) 287
XspI CTAG 2 cut(s) 459, 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.