Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003212.1

Orthogroup ID

OG0003426

Physical Location & Seq

Genomic Coordinates Forward (+)

2467 .. 3099

Gene Structure 633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003212.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atgttgttttctaatgcaaaacgcagcgttgcgttgccatccaggatggatattgacaaagtgattatcgatgtcgaagaggattcaaaagggtttggtgaaggcaatgaaattgggttaaagaagcagaagatatgtaaaaagaacgatggaaaagggtggaagtgtagaaaggaagtgaaggaagggtactcattttgcaatcaccacataacccttattaggtcttaccataatactggcagcaacaatgctactagcaatgctaacaagtccttttctttcaagaagcccaaggtgaccacgagagaggctcctgaggccaaggcgaaaaagggctcgtcctcgaagtctaatgactatatatactactcgctttttagtccatggtggaatcagaatagaaggactatagttgaggaactgaccgcgaagaatattgctgttgaaaatggtgctactacatcctctactagtgtagctactccaaatcaagatcctccatcacccaaggctggtaatcagaatcaatccgcttatgtggatgccaatgaaggcaacgatgatgggagcaacaaatgtcgccgaaagaggatgaggaagcctatgaaggctgtccttatttccagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRC

Protein Analysis

210

Amino Acids

23.37

Weight (kDa)

9.7

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00310 AT4G00310
fragaria_vesca	FvH4_7g14870 FvH4_7g14870 FvH4_7g14870 FvH4_7g14880 FvH4_7g14980 FvH4_7g14980 FvH4_7g14980
malus_domestica	MD01G1067400.v1.1 MD07G1133500.v1.1
prunus_persica	Prupe.2G173800_v2.0.a1
pyrus_communis	pycom01g09650 pycom07g13110
rosa_chinensis	RchiOBHm_Chr1g0357021
rosa_laevigata	RLG00000028060 RLG00000028080
rosa_multiflora	Rmu_sc0000166.1_g000038 Rmu_sc0002572.1_g000002 Rmu_sc0003212.1_g000001
rosa_roxburghii	Rroxscaffold_4G00299120 Rroxscaffold_4G00299300 Rroxscaffold_4G00299330
rosa_rugosa	Rorug01G0251500 Rorug01G0253100 Rorug01G0253200 Rorug01G0253300
rosa_samantha	Rh1AG265800 Rh1AG267300 Rh1BG233400 Rh1BG235100 Rh1CG249300 Rh1CG251300 Rh1DG260800 Rh1DG262500
rosa_wichuraiana	Rw1G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	431
AciI	CCGC	2 cut(s)	429, 534
AclWI	GGATC	1 cut(s)	491
AfaI	GTAC	1 cut(s)	191
AfiI	CCNNNNNNNGG	2 cut(s)	222, 515
AgsI	TTSAA	3 cut(s)	87, 286, 449
AhlI	ACTAGT	1 cut(s)	473
AjnI	CCWGG	1 cut(s)	41
AluBI	AGCT	2 cut(s)	482, 630
AluI	AGCT	2 cut(s)	482, 630
AlwI	GGATC	1 cut(s)	491
AoxI	GGCC	1 cut(s)	321
ApeKI	GCWGC	2 cut(s)	24, 243
AsuHPI	GGTGA	4 cut(s)	110, 197, 310, 498
AxyI	CCTNAGG	1 cut(s)	318
BanII	GRGCYC	1 cut(s)	341
BarI	GAAGNNNNNNTAC	2 cut(s)	173, 205
BauI	CACGAG	1 cut(s)	304
BbvI	GCAGC	2 cut(s)	36, 255
BccI	CCATC	5 cut(s)	40, 46, 143, 511, 560
BciT130I	CCWGG	1 cut(s)	43
BcuI	ACTAGT	1 cut(s)	473
BfaI	CTAG	2 cut(s)	258, 474
BfmI	CTRYAG	1 cut(s)	411
BisI	GCNGC	2 cut(s)	25, 244
BlsI	GCNGC	2 cut(s)	26, 245
Bme1390I	CCNGG	1 cut(s)	43
BmiI	GGNNCC	1 cut(s)	315
BmrFI	CCNGG	1 cut(s)	43
BmsI	GCATC	1 cut(s)	535
BplI	GAGNNNNNCTC	2 cut(s)	298, 330
Bsa29I	ATCGAT	1 cut(s)	69
BsaJI	CCNNGG	4 cut(s)	294, 324, 386, 510
Bsc4I	CCNNNNNNNGG	2 cut(s)	222, 515
Bse1I	ACTGG	1 cut(s)	244
Bse21I	CCTNAGG	1 cut(s)	318
Bse3DI	GCAATG	2 cut(s)	112, 268
BseBI	CCWGG	1 cut(s)	43
BseCI	ATCGAT	1 cut(s)	69
BseDI	CCNNGG	4 cut(s)	294, 324, 386, 510
BseGI	GGATG	5 cut(s)	38, 51, 464, 550, 600
BseLI	CCNNNNNNNGG	2 cut(s)	222, 515
BseMI	GCAATG	2 cut(s)	112, 268
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	1 cut(s)	244
BseXI	GCAGC	2 cut(s)	36, 255
Bsh1236I	CGCG	1 cut(s)	431
BshFI	GGCC	1 cut(s)	323
BshVI	ATCGAT	1 cut(s)	69
BslI	CCNNNNNNNGG	2 cut(s)	222, 515
BsnI	GGCC	1 cut(s)	323
Bsp1286I	GDGCHC	1 cut(s)	341
Bsp143I	GATC	1 cut(s)	496
Bsp19I	CCATGG	1 cut(s)	386
BspACI	CCGC	2 cut(s)	429, 534
BspANI	GGCC	1 cut(s)	323
BspCNI	CTCAG	1 cut(s)	310
BspDI	ATCGAT	1 cut(s)	69
BspFNI	CGCG	1 cut(s)	431
BspLI	GGNNCC	1 cut(s)	315
BspPI	GGATC	1 cut(s)	491
BsrDI	GCAATG	2 cut(s)	112, 268
BsrI	ACTGG	1 cut(s)	244
BssECI	CCNNGG	4 cut(s)	294, 324, 386, 510
BssMI	GATC	1 cut(s)	496
BssSI	CACGAG	1 cut(s)	304
BssT1I	CCWWGG	4 cut(s)	294, 324, 386, 510
Bst2BI	CACGAG	1 cut(s)	304
Bst2UI	CCWGG	1 cut(s)	43
Bst6I	CTCTTC	1 cut(s)	72
BstDEI	CTNAG	1 cut(s)	318
BstDSI	CCRYGG	1 cut(s)	386
BstEII	GGTNACC	1 cut(s)	298
BstF5I	GGATG	5 cut(s)	38, 51, 464, 550, 600
BstFNI	CGCG	1 cut(s)	431
BstKTI	GATC	1 cut(s)	499
BstMBI	GATC	1 cut(s)	496
BstMWI	GCNNNNNNNGC	1 cut(s)	320
BstNI	CCWGG	1 cut(s)	43
BstPI	GGTNACC	1 cut(s)	298
BstSCI	CCNGG	1 cut(s)	41
BstSFI	CTRYAG	1 cut(s)	411
BstUI	CGCG	1 cut(s)	431
BstV1I	GCAGC	2 cut(s)	36, 255
BstX2I	RGATCY	1 cut(s)	496
BstXI	CCANNNNNNTGG	1 cut(s)	239
BstYI	RGATCY	1 cut(s)	496
Bsu15I	ATCGAT	1 cut(s)	69
Bsu36I	CCTNAGG	1 cut(s)	318
BsuRI	GGCC	1 cut(s)	323
BsuTUI	ATCGAT	1 cut(s)	69
BtgI	CCRYGG	1 cut(s)	386
BtsCI	GGATG	5 cut(s)	38, 51, 464, 550, 600
ClaI	ATCGAT	1 cut(s)	69
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	1 cut(s)	387
CviJI	RGCY	9 cut(s)	292, 314, 323, 339, 482, 515, 604, 614, 630
CviKI_1	RGCY	9 cut(s)	292, 314, 323, 339, 482, 515, 604, 614, 630
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	1 cut(s)	318
DpnI	GATC	1 cut(s)	498
DpnII	GATC	1 cut(s)	496
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
Eco130I	CCWWGG	4 cut(s)	294, 324, 386, 510
Eco24I	GRGCYC	1 cut(s)	341
Eco81I	CCTNAGG	1 cut(s)	318
Eco91I	GGTNACC	1 cut(s)	298
EcoO65I	GGTNACC	1 cut(s)	298
EcoRII	CCWGG	1 cut(s)	41
EcoT14I	CCWWGG	4 cut(s)	294, 324, 386, 510
EcoT38I	GRGCYC	1 cut(s)	341
ErhI	CCWWGG	4 cut(s)	294, 324, 386, 510
FaeI	CATG	1 cut(s)	390
FatI	CATG	1 cut(s)	386
Fnu4HI	GCNGC	2 cut(s)	25, 244
FokI	GGATG	5 cut(s)	25, 58, 451, 557, 607
FriOI	GRGCYC	1 cut(s)	341
Fsp4HI	GCNGC	2 cut(s)	25, 244
FspBI	CTAG	2 cut(s)	258, 474
GluI	GCNGC	2 cut(s)	25, 244
HaeIII	GGCC	1 cut(s)	323
Hin1II	CATG	1 cut(s)	390
HinfI	GANTC	3 cut(s)	83, 394, 526
HphI	GGTGA	4 cut(s)	110, 197, 310, 498
Hpy188I	TCNGA	2 cut(s)	399, 525
Hpy188III	TCNNGA	3 cut(s)	286, 317, 494
HpyAV	CCTTC	6 cut(s)	95, 175, 179, 399, 548, 604
HpyCH4V	TGCA	2 cut(s)	17, 201
HpyF10VI	GCNNNNNNNGC	1 cut(s)	320
HpyF3I	CTNAG	1 cut(s)	318
Hsp92II	CATG	1 cut(s)	390
Kzo9I	GATC	1 cut(s)	496
LmnI	GCTCC	2 cut(s)	319, 570
LpnPI	CCDG	5 cut(s)	28, 55, 225, 330, 501
Lsp1109I	GCAGC	2 cut(s)	36, 255
LweI	GCATC	1 cut(s)	535
MaeI	CTAG	2 cut(s)	258, 474
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	1 cut(s)	498
MboI	GATC	1 cut(s)	496
MboII	GAAGA	3 cut(s)	89, 142, 445
MflI	RGATCY	1 cut(s)	496
MhlI	GDGCHC	1 cut(s)	341
MluCI	AATT	1 cut(s)	111
MnlI	CCTC	9 cut(s)	73, 304, 313, 355, 412, 478, 510, 585, 591
MseI	TTAA	1 cut(s)	119
MspA1I	CMGCKG	1 cut(s)	630
MspR9I	CCNGG	1 cut(s)	43
MvaI	CCWGG	1 cut(s)	43
MvnI	CGCG	1 cut(s)	431
MwoI	GCNNNNNNNGC	1 cut(s)	320
NcoI	CCATGG	1 cut(s)	386
NdeII	GATC	1 cut(s)	496
NlaIII	CATG	1 cut(s)	390
NlaIV	GGNNCC	1 cut(s)	315
NmuCI	GTSAC	1 cut(s)	298
PfeI	GAWTC	3 cut(s)	83, 394, 526
PfoI	TCCNGGA	1 cut(s)	41
PkrI	GCNGC	2 cut(s)	26, 245
Psp6I	CCWGG	1 cut(s)	41
PspEI	GGTNACC	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	41
PspN4I	GGNNCC	1 cut(s)	315
PsuI	RGATCY	1 cut(s)	496
PvuII	CAGCTG	1 cut(s)	630
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
SaqAI	TTAA	1 cut(s)	119
SatI	GCNGC	2 cut(s)	25, 244
Sau3AI	GATC	1 cut(s)	496
ScrFI	CCNGG	1 cut(s)	43
SduI	GDGCHC	1 cut(s)	341
SetI	ASST	4 cut(s)	227, 300, 484, 632
SfaNI	GCATC	1 cut(s)	535
SfcI	CTRYAG	1 cut(s)	411
SpeI	ACTAGT	1 cut(s)	473
Sse9I	AATT	1 cut(s)	111
SsiI	CCGC	2 cut(s)	429, 534
SspI	AATATT	1 cut(s)	439
SspMI	CTAG	2 cut(s)	258, 474
StyD4I	CCNGG	1 cut(s)	41
StyI	CCWWGG	4 cut(s)	294, 324, 386, 510
TaqI	TCGA	3 cut(s)	69, 75, 347
TasI	AATT	1 cut(s)	111
TfiI	GAWTC	3 cut(s)	83, 394, 526
Tru1I	TTAA	1 cut(s)	119
Tru9I	TTAA	1 cut(s)	119
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	2 cut(s)	24, 243
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	3 cut(s)	123, 567, 623
XspI	CTAG	2 cut(s)	258, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.