Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003426

Physical Location & Seq

Genomic Coordinates Reverse (-)

22008554 .. 22010303

Gene Structure 1750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G173800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGCGGATCAGGAAGAACGCCAAGGTCTCCCCTCTCCTGTTCTCGTCGCACGCTCCAGCTGCGGAGGACCTCCAGGCACACGTGTGCCAGTTAAATCAATCCCCATGGGATGTTATTTCCTTTGGTCCAGACTCGAACCAGTTGGAAGAGAGCTTCTATGTAAATAACAATGGGAGCTTCGGTGATTCTCTCGGAGCTGCTGAAAGCGTTGCGTCGATGATGGATATCGGCAAAGAGAAAGCCGTGCAGATGGAACAAGAGCCCGTCGCTGATGACAAAAAGGATTCGAATTCGAAAGAGTTATTGGACGACGATAACGAAGAGGAAGGGAGGAGATCAAGCTACGCGTGTTGCCAGAAGAACGATGGAAAGGGCTGGCATTGCAAGAAGAGAGCCAAACTCGGCCAGTCTTTCTGCAACCATCACTTATCCCTGCTTAGGTCTAACCATAATACCAACATTGCTTCCAACAATAAGGGCCCCCGGGAAGCTGCGAGCAAGGTACTGTCAGCTGGAGCCCGCCGCTCCCGGGCCAAGGCGAAGAGGGGATCCTCCTCAAACCCTTACGAATTCTATTACTATTCGGGGTTTGGCCCGCTGTGGGGGCGAAAGAGGGGCGGGGATAAGGAGAAGGAAGAGCCCAAGATTGATGAAGATAGAGTCACTACTACTACTTCAACTACTCCTCCTACTCAATCTTCGTCTTCTCAAATTGATGAGAAGAAATTCGAATATGTGGATGACTACGATGACGACGAGGATGACTTTGATGATGATGTTCGCAGCGGGGAGAGCGGGCGGAAGCGGATGAGAAAGCCGGTGAAGGCGAGATCTCTGAAGTCCCTTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRC

Protein Analysis

284

Amino Acids

31.65

Weight (kDa)

6.35

Isoelectric Point (pI)

59.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00310 AT4G00310
fragaria_vesca	FvH4_7g14870 FvH4_7g14870 FvH4_7g14870 FvH4_7g14880 FvH4_7g14980 FvH4_7g14980 FvH4_7g14980
malus_domestica	MD01G1067400.v1.1 MD07G1133500.v1.1
prunus_persica	Prupe.2G173800_v2.0.a1
pyrus_communis	pycom01g09650 pycom07g13110
rosa_chinensis	RchiOBHm_Chr1g0357021
rosa_laevigata	RLG00000028060 RLG00000028080
rosa_multiflora	Rmu_sc0000166.1_g000038 Rmu_sc0002572.1_g000002 Rmu_sc0003212.1_g000001
rosa_roxburghii	Rroxscaffold_4G00299120 Rroxscaffold_4G00299300 Rroxscaffold_4G00299330
rosa_rugosa	Rorug01G0251500 Rorug01G0253100 Rorug01G0253200 Rorug01G0253300
rosa_samantha	Rh1AG265800 Rh1AG267300 Rh1BG233400 Rh1BG235100 Rh1CG249300 Rh1CG251300 Rh1DG260800 Rh1DG262500
rosa_wichuraiana	Rw1G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	525, 795
AccII	CGCG	1 cut(s)	347
AclWI	GGATC	3 cut(s)	14, 543, 556
AcoI	YGGCCR	1 cut(s)	403
AcsI	RAATTY	3 cut(s)	289, 569, 725
AcvI	CACGTG	1 cut(s)	82
AfaI	GTAC	1 cut(s)	504
AfiI	CCNNNNNNNGG	5 cut(s)	438, 529, 535, 601, 602
AflIII	ACRYGT	3 cut(s)	79, 81, 345
AgsI	TTSAA	1 cut(s)	678
AjnI	CCWGG	1 cut(s)	72
AjuI	GAANNNNNNNTTGG	2 cut(s)	287, 319
AleI	CACNNNNGTG	1 cut(s)	82
AluBI	AGCT	7 cut(s)	59, 153, 177, 197, 342, 491, 512
AluI	AGCT	7 cut(s)	59, 153, 177, 197, 342, 491, 512
Alw26I	GTCTC	1 cut(s)	31
AlwI	GGATC	3 cut(s)	14, 543, 556
Ama87I	CYCGRG	2 cut(s)	483, 528
AoxI	GGCC	4 cut(s)	403, 478, 531, 592
ApaI	GGGCCC	1 cut(s)	482
ApeKI	GCWGC	4 cut(s)	59, 197, 491, 783
ApoI	RAATTY	3 cut(s)	289, 569, 725
Asp700I	GAANNNNTTC	1 cut(s)	725
AspS9I	GGNCC	6 cut(s)	67, 125, 478, 479, 531, 593
AsuC2I	CCSGG	4 cut(s)	484, 485, 529, 530
AsuHPI	GGTGA	2 cut(s)	194, 832
AsuII	TTCGAA	3 cut(s)	287, 293, 729
AvaI	CYCGRG	2 cut(s)	483, 528
AvaII	GGWCC	2 cut(s)	67, 125
BaeGI	GKGCMC	1 cut(s)	482
BamHI	GGATCC	1 cut(s)	548
BanII	GRGCYC	4 cut(s)	264, 482, 520, 642
BbrPI	CACGTG	1 cut(s)	82
BbsI	GAAGAC	1 cut(s)	696
BbvI	GCAGC	4 cut(s)	46, 184, 478, 795
BccI	CCATC	4 cut(s)	214, 244, 359, 429
BceAI	ACGGC	1 cut(s)	227
BciT130I	CCWGG	1 cut(s)	74
BcnI	CCSGG	4 cut(s)	484, 485, 529, 530
BcoDI	GTCTC	1 cut(s)	31
BglII	AGATCT	1 cut(s)	830
BisI	GCNGC	5 cut(s)	60, 198, 492, 523, 784
BlsI	GCNGC	5 cut(s)	61, 199, 493, 524, 785
Bme1390I	CCNGG	5 cut(s)	74, 484, 485, 529, 530
Bme18I	GGWCC	2 cut(s)	67, 125
BmeT110I	CYCGRG	2 cut(s)	483, 528
BmgT120I	GGNCC	6 cut(s)	67, 125, 478, 479, 531, 593
BmiI	GGNNCC	4 cut(s)	480, 481, 517, 550
BmrFI	CCNGG	5 cut(s)	74, 484, 485, 529, 530
BpiI	GAAGAC	1 cut(s)	696
BplI	GAGNNNNNCTC	2 cut(s)	384, 416
BpmI	CTGGAG	3 cut(s)	39, 56, 534
Bpu10I	CCTNAGC	1 cut(s)	437
Bpu14I	TTCGAA	3 cut(s)	287, 293, 729
BpuMI	CCSGG	4 cut(s)	484, 485, 529, 530
BsaAI	YACGTR	1 cut(s)	82
BsaBI	GATNNNNATC	1 cut(s)	224
BsaI	GGTCTC	1 cut(s)	31
BsaJI	CCNNGG	6 cut(s)	21, 104, 482, 483, 528, 534
BsaXI	ACNNNNNCTCC	4 cut(s)	166, 196, 670, 700
Bsc4I	CCNNNNNNNGG	5 cut(s)	438, 529, 535, 601, 602
Bse118I	RCCGGY	1 cut(s)	817
Bse1I	ACTGG	3 cut(s)	88, 139, 406
Bse3DI	GCAATG	2 cut(s)	379, 459
Bse8I	GATNNNNATC	1 cut(s)	224
BseBI	CCWGG	1 cut(s)	74
BseDI	CCNNGG	6 cut(s)	21, 104, 482, 483, 528, 534
BseGI	GGATG	4 cut(s)	115, 745, 766, 813
BseJI	GATNNNNATC	1 cut(s)	224
BseLI	CCNNNNNNNGG	5 cut(s)	438, 529, 535, 601, 602
BseMI	GCAATG	2 cut(s)	379, 459
BseNI	ACTGG	3 cut(s)	88, 139, 406
BseRI	GAGGAG	3 cut(s)	346, 544, 675
BseSI	GKGCMC	1 cut(s)	482
BseXI	GCAGC	4 cut(s)	46, 184, 478, 795
BsgI	GTGCAG	1 cut(s)	266
Bsh1236I	CGCG	1 cut(s)	347
BshFI	GGCC	4 cut(s)	405, 480, 533, 594
BsiHKCI	CYCGRG	2 cut(s)	483, 528
BsiSI	CCGG	3 cut(s)	484, 529, 818
BslFI	GGGAC	1 cut(s)	826
BslI	CCNNNNNNNGG	5 cut(s)	438, 529, 535, 601, 602
BsmAI	GTCTC	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	826
BsnI	GGCC	4 cut(s)	405, 480, 533, 594
Bso31I	GGTCTC	1 cut(s)	31
BsoBI	CYCGRG	2 cut(s)	483, 528
Bsp119I	TTCGAA	3 cut(s)	287, 293, 729
Bsp120I	GGGCCC	1 cut(s)	478
Bsp1286I	GDGCHC	4 cut(s)	264, 482, 520, 642
Bsp143I	GATC	4 cut(s)	6, 335, 548, 830
Bsp19I	CCATGG	1 cut(s)	104
BspANI	GGCC	4 cut(s)	405, 480, 533, 594
BspFNI	CGCG	1 cut(s)	347
BspLI	GGNNCC	4 cut(s)	480, 481, 517, 550
BspPI	GGATC	3 cut(s)	14, 543, 556
BspQI	GCTCTTC	1 cut(s)	630
BspT104I	TTCGAA	3 cut(s)	287, 293, 729
BspTNI	GGTCTC	1 cut(s)	31
BsrBI	CCGCTC	2 cut(s)	525, 795
BsrDI	GCAATG	2 cut(s)	379, 459
BsrFI	RCCGGY	1 cut(s)	817
BsrI	ACTGG	3 cut(s)	88, 139, 406
BssAI	RCCGGY	1 cut(s)	817
BssECI	CCNNGG	6 cut(s)	21, 104, 482, 483, 528, 534
BssMI	GATC	4 cut(s)	6, 335, 548, 830
BssT1I	CCWWGG	3 cut(s)	21, 104, 534
Bst2UI	CCWGG	1 cut(s)	74
Bst4CI	ACNGT	1 cut(s)	507
Bst6I	CTCTTC	5 cut(s)	141, 315, 383, 536, 630
BstBAI	YACGTR	1 cut(s)	82
BstBI	TTCGAA	3 cut(s)	287, 293, 729
BstC8I	GCNNGC	6 cut(s)	51, 377, 496, 520, 596, 797
BstDEI	CTNAG	1 cut(s)	437
BstDSI	CCRYGG	1 cut(s)	104
BstF5I	GGATG	4 cut(s)	115, 745, 766, 813
BstFNI	CGCG	1 cut(s)	347
BstKTI	GATC	4 cut(s)	9, 338, 551, 833
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	4 cut(s)	6, 335, 548, 830
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 381, 604, 792
BstNI	CCWGG	1 cut(s)	74
BstSCI	CCNGG	5 cut(s)	72, 482, 483, 527, 528
BstSLI	GKGCMC	1 cut(s)	482
BstUI	CGCG	1 cut(s)	347
BstV1I	GCAGC	4 cut(s)	46, 184, 478, 795
BstV2I	GAAGAC	1 cut(s)	696
BstX2I	RGATCY	2 cut(s)	548, 830
BstYI	RGATCY	2 cut(s)	548, 830
BsuRI	GGCC	4 cut(s)	405, 480, 533, 594
BtgI	CCRYGG	1 cut(s)	104
BtsCI	GGATG	4 cut(s)	115, 745, 766, 813
Cac8I	GCNNGC	6 cut(s)	51, 377, 496, 520, 596, 797
Cfr10I	RCCGGY	1 cut(s)	817
Cfr13I	GGNCC	6 cut(s)	67, 125, 478, 479, 531, 593
Cfr9I	CCCGGG	2 cut(s)	483, 528
CseI	GACGC	1 cut(s)	201
Csp6I	GTAC	1 cut(s)	503
CviAII	CATG	1 cut(s)	105
CviQI	GTAC	1 cut(s)	503
DdeI	CTNAG	1 cut(s)	437
DpnI	GATC	4 cut(s)	8, 337, 550, 832
DpnII	GATC	4 cut(s)	6, 335, 548, 830
EaeI	YGGCCR	1 cut(s)	403
Eam1104I	CTCTTC	5 cut(s)	141, 315, 383, 536, 630
EarI	CTCTTC	5 cut(s)	141, 315, 383, 536, 630
EciI	GGCGGA	1 cut(s)	814
Eco130I	CCWWGG	3 cut(s)	21, 104, 534
Eco24I	GRGCYC	4 cut(s)	264, 482, 520, 642
Eco31I	GGTCTC	1 cut(s)	31
Eco32I	GATATC	1 cut(s)	226
Eco47I	GGWCC	2 cut(s)	67, 125
Eco72I	CACGTG	1 cut(s)	82
Eco88I	CYCGRG	2 cut(s)	483, 528
EcoO109I	RGGNCCY	3 cut(s)	67, 478, 479
EcoRI	GAATTC	2 cut(s)	289, 569
EcoRII	CCWGG	1 cut(s)	72
EcoRV	GATATC	1 cut(s)	226
EcoT14I	CCWWGG	3 cut(s)	21, 104, 534
EcoT38I	GRGCYC	4 cut(s)	264, 482, 520, 642
ErhI	CCWWGG	3 cut(s)	21, 104, 534
FaeI	CATG	1 cut(s)	108
FaiI	YATR	5 cut(s)	106, 159, 450, 735, 848
FaqI	GGGAC	1 cut(s)	826
FatI	CATG	1 cut(s)	104
FauI	CCCGC	5 cut(s)	527, 603, 611, 779, 788
Fnu4HI	GCNGC	5 cut(s)	60, 198, 492, 523, 784
FokI	GGATG	4 cut(s)	122, 752, 773, 820
FriOI	GRGCYC	4 cut(s)	264, 482, 520, 642
Fsp4HI	GCNGC	5 cut(s)	60, 198, 492, 523, 784
GluI	GCNGC	5 cut(s)	60, 198, 492, 523, 784
GsuI	CTGGAG	3 cut(s)	39, 56, 534
HaeIII	GGCC	4 cut(s)	405, 480, 533, 594
HapII	CCGG	3 cut(s)	484, 529, 818
HgaI	GACGC	1 cut(s)	201
Hin1II	CATG	1 cut(s)	108
HinfI	GANTC	4 cut(s)	131, 185, 284, 660
HpaII	CCGG	3 cut(s)	484, 529, 818
HphI	GGTGA	2 cut(s)	194, 832
Hpy188I	TCNGA	2 cut(s)	194, 837
Hpy188III	TCNNGA	2 cut(s)	10, 128
Hpy99I	CGWCG	5 cut(s)	49, 217, 269, 314, 758
HpyAV	CCTTC	3 cut(s)	320, 625, 817
HpyCH4III	ACNGT	1 cut(s)	507
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	3 cut(s)	247, 384, 417
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 381, 604, 792
HpyF3I	CTNAG	1 cut(s)	437
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	1 cut(s)	108
Kzo9I	GATC	4 cut(s)	6, 335, 548, 830
LguI	GCTCTTC	1 cut(s)	630
LmnI	GCTCC	5 cut(s)	58, 174, 194, 515, 530
Lsp1109I	GCAGC	4 cut(s)	46, 184, 478, 795
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	661
MalI	GATC	4 cut(s)	8, 337, 550, 832
MbiI	CCGCTC	2 cut(s)	525, 795
MboI	GATC	4 cut(s)	6, 335, 548, 830
MflI	RGATCY	2 cut(s)	548, 830
MhlI	GDGCHC	4 cut(s)	264, 482, 520, 642
MluCI	AATT	4 cut(s)	289, 569, 711, 725
MluI	ACGCGT	1 cut(s)	345
MlyI	GAGTC	2 cut(s)	125, 669
MmeI	TCCRAC	2 cut(s)	123, 492
MroXI	GAANNNNTTC	1 cut(s)	725
MseI	TTAA	1 cut(s)	92
MslI	CAYNNNNRTG	1 cut(s)	82
MspA1I	CMGCKG	4 cut(s)	59, 512, 598, 786
MspI	CCGG	3 cut(s)	484, 529, 818
MspR9I	CCNGG	5 cut(s)	74, 484, 485, 529, 530
MvaI	CCWGG	1 cut(s)	74
MvnI	CGCG	1 cut(s)	347
MwoI	GCNNNNNNNGC	4 cut(s)	59, 381, 604, 792
NciI	CCSGG	4 cut(s)	484, 485, 529, 530
NcoI	CCATGG	1 cut(s)	104
NdeII	GATC	4 cut(s)	6, 335, 548, 830
NlaIII	CATG	1 cut(s)	108
NlaIV	GGNNCC	4 cut(s)	480, 481, 517, 550
NmeAIII	GCCGAG	1 cut(s)	381
NmuCI	GTSAC	1 cut(s)	661
NspV	TTCGAA	3 cut(s)	287, 293, 729
OliI	CACNNNNGTG	1 cut(s)	82
PciSI	GCTCTTC	1 cut(s)	630
PcsI	WCGNNNNNNNCGW	2 cut(s)	315, 753
PdmI	GAANNNNTTC	1 cut(s)	725
PfeI	GAWTC	2 cut(s)	185, 284
PkrI	GCNGC	5 cut(s)	61, 199, 493, 524, 785
PleI	GAGTC	2 cut(s)	125, 668
PmaCI	CACGTG	1 cut(s)	82
PmlI	CACGTG	1 cut(s)	82
PpsI	GAGTC	2 cut(s)	125, 668
Ppu21I	YACGTR	1 cut(s)	82
PpuMI	RGGWCCY	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	72
PspCI	CACGTG	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	72
PspN4I	GGNNCC	4 cut(s)	480, 481, 517, 550
PspOMI	GGGCCC	1 cut(s)	478
PspPI	GGNCC	6 cut(s)	67, 125, 478, 479, 531, 593
PspPPI	RGGWCCY	1 cut(s)	67
PsuI	RGATCY	2 cut(s)	548, 830
PvuII	CAGCTG	2 cut(s)	59, 512
RsaI	GTAC	1 cut(s)	504
RsaNI	GTAC	1 cut(s)	503
RseI	CAYNNNNRTG	1 cut(s)	82
SapI	GCTCTTC	1 cut(s)	630
SaqAI	TTAA	1 cut(s)	92
SatI	GCNGC	5 cut(s)	60, 198, 492, 523, 784
Sau3AI	GATC	4 cut(s)	6, 335, 548, 830
Sau96I	GGNCC	6 cut(s)	67, 125, 478, 479, 531, 593
SchI	GAGTC	2 cut(s)	125, 669
ScrFI	CCNGG	5 cut(s)	74, 484, 485, 529, 530
SduI	GDGCHC	4 cut(s)	264, 482, 520, 642
SfuI	TTCGAA	3 cut(s)	287, 293, 729
SinI	GGWCC	2 cut(s)	67, 125
SmaI	CCCGGG	2 cut(s)	485, 530
SmiMI	CAYNNNNRTG	1 cut(s)	82
Sse9I	AATT	4 cut(s)	289, 569, 711, 725
StyD4I	CCNGG	5 cut(s)	72, 482, 483, 527, 528
StyI	CCWWGG	3 cut(s)	21, 104, 534
TaaI	ACNGT	1 cut(s)	507
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	5 cut(s)	134, 215, 287, 293, 729
TasI	AATT	4 cut(s)	289, 569, 711, 725
TauI	GCSGC	1 cut(s)	525
TfiI	GAWTC	2 cut(s)	185, 284
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TseFI	GTSAC	1 cut(s)	661
TseI	GCWGC	4 cut(s)	59, 197, 491, 783
Tsp45I	GTSAC	1 cut(s)	661
TspDTI	ATGAA	1 cut(s)	666
TspMI	CCCGGG	2 cut(s)	483, 528
VpaK11BI	GGWCC	2 cut(s)	67, 125
XapI	RAATTY	3 cut(s)	289, 569, 725
XcmI	CCANNNNNNNNNTGG	1 cut(s)	362
XmaI	CCCGGG	2 cut(s)	483, 528
XmnI	GAANNNNTTC	1 cut(s)	725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.