Rh1CG251300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0003426
Physical Location & Seq
Forward (+)
51437512 .. 51439427
1916 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG251300.1

Sequence Viewer

Length: 642 bp
ATGGATATCGACAAGGCAGAAATGGCGACCGGCGATGTGTTGGATAACGTCGACAGAGCAATTGTGAGGTGTCAGAAGAACGACGGCAGGAGCTGGCAATGCAAGAAGGAAGCGAAAGAAGGCTTCTTATTTTGTGACCATCATATCCGAAGGTCGTCTTATGGTAACAACAACGTTACTAGCAATGGCAATATTCTTCCCTCCAACTTTGTGGCTTCGAAGAAGGACACGGCGGCGGCCCCGGCCAAGACGCTAGCCGGAACCCGCCGTGCCAGACCCAAGGCGGTGAAGAAGGGGGCGTCGTCGGCGAACCCCTATGAGTTCTACTACTATTCGGGGTTCGGCCCAAAATGGGGCCGAAAGAGAGGCAAGAAAGGCGAGGTGGTGGAGGAGGAGGAGGAGGCCAATAATATTGAGTCAGCAGCTGGAAAGGTTGCAACTTCTTGTAGTACTAGTAGTGCTAACACCGATCCCCAACCTTCTTCACCTCACAACGTTGATAATGGGAATCAATTGGACTACATGGAAGACGACTTCGACGACGAGGATGGGAGCGACGAAGAAGGCGGCCCGAGGAGGATGAGGAGGCCGGTGAAGGCTCGATCCTTGATGTCCATAATTAATGTAAAAGCTCAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WRC

Protein Analysis

213

Amino Acids

23.43

Weight (kDa)

6.85

Isoelectric Point (pI)

60.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRC PF08879 22 - 55 2e-09 WRC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 51
AciI CCGC 5 cut(s) 233, 236, 265, 284, 567
AclI AACGTT 2 cut(s) 174, 495
AclWI GGATC 2 cut(s) 464, 597
AcoI YGGCCR 1 cut(s) 243
AcyI GRCGYC 1 cut(s) 299
AfaI GTAC 1 cut(s) 451
AfiI CCNNNNNNNGG 2 cut(s) 352, 353
AhlI ACTAGT 1 cut(s) 452
AluBI AGCT 3 cut(s) 93, 425, 632
AluI AGCT 3 cut(s) 93, 425, 632
AlwI GGATC 2 cut(s) 464, 597
AlwNI CAGNNNCTG 2 cut(s) 93, 425
Ama87I CYCGRG 1 cut(s) 571
AoxI GGCC 7 cut(s) 237, 243, 343, 355, 402, 568, 587
ApeKI GCWGC 1 cut(s) 422
AseI ATTAAT 1 cut(s) 621
AspS9I GGNCC 4 cut(s) 238, 344, 355, 569
AsuC2I CCSGG 1 cut(s) 242
AsuHPI GGTGA 3 cut(s) 298, 477, 604
AsuII TTCGAA 1 cut(s) 218
AsuNHI GCTAGC 1 cut(s) 253
AvaI CYCGRG 1 cut(s) 571
BbsI GAAGAC 1 cut(s) 534
BbvI GCAGC 1 cut(s) 434
BccI CCATC 2 cut(s) 147, 542
BceAI ACGGC 3 cut(s) 100, 246, 252
BcnI CCSGG 1 cut(s) 242
BcuI ACTAGT 1 cut(s) 452
BfaI CTAG 3 cut(s) 180, 254, 453
BisI GCNGC 4 cut(s) 234, 237, 423, 568
BlsI GCNGC 4 cut(s) 235, 238, 424, 569
BmcAI AGTACT 1 cut(s) 451
Bme1390I CCNGG 1 cut(s) 242
BmeT110I CYCGRG 1 cut(s) 571
BmgT120I GGNCC 4 cut(s) 238, 344, 355, 569
BmiI GGNNCC 3 cut(s) 240, 262, 356
BmrFI CCNGG 1 cut(s) 242
BmtI GCTAGC 1 cut(s) 257
BpiI GAAGAC 1 cut(s) 534
Bpu14I TTCGAA 1 cut(s) 218
BpuEI CTTGAG 1 cut(s) 618
BpuMI CCSGG 1 cut(s) 242
BsaHI GRCGYC 1 cut(s) 299
BsaJI CCNNGG 3 cut(s) 240, 279, 572
Bsc4I CCNNNNNNNGG 2 cut(s) 352, 353
Bse118I RCCGGY 2 cut(s) 29, 589
Bse3DI GCAATG 2 cut(s) 104, 190
BseDI CCNNGG 3 cut(s) 240, 279, 572
BseGI GGATG 2 cut(s) 553, 585
BseLI CCNNNNNNNGG 2 cut(s) 352, 353
BseMI GCAATG 2 cut(s) 104, 190
BseRI GAGGAG 6 cut(s) 404, 407, 410, 413, 589, 598
BseXI GCAGC 1 cut(s) 434
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 7 cut(s) 239, 245, 345, 357, 404, 570, 589
BsiEI CGRYCG 1 cut(s) 30
BsiHKCI CYCGRG 1 cut(s) 571
BsiSI CCGG 4 cut(s) 30, 242, 258, 590
BslI CCNNNNNNNGG 2 cut(s) 352, 353
BsnI GGCC 7 cut(s) 239, 245, 345, 357, 404, 570, 589
BsoBI CYCGRG 1 cut(s) 571
Bsp119I TTCGAA 1 cut(s) 218
Bsp143I GATC 2 cut(s) 469, 602
BspACI CCGC 5 cut(s) 233, 236, 265, 284, 567
BspANI GGCC 7 cut(s) 239, 245, 345, 357, 404, 570, 589
BspLI GGNNCC 3 cut(s) 240, 262, 356
BspOI GCTAGC 1 cut(s) 257
BspPI GGATC 2 cut(s) 464, 597
BspT104I TTCGAA 1 cut(s) 218
BsrDI GCAATG 2 cut(s) 104, 190
BsrFI RCCGGY 2 cut(s) 29, 589
BssAI RCCGGY 2 cut(s) 29, 589
BssECI CCNNGG 3 cut(s) 240, 279, 572
BssMI GATC 2 cut(s) 469, 602
BssNI GRCGYC 1 cut(s) 299
BssT1I CCWWGG 1 cut(s) 279
BstACI GRCGYC 1 cut(s) 299
BstBI TTCGAA 1 cut(s) 218
BstC8I GCNNGC 2 cut(s) 95, 255
BstF5I GGATG 2 cut(s) 553, 585
BstKTI GATC 2 cut(s) 472, 605
BstMBI GATC 2 cut(s) 469, 602
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 5 cut(s) 23, 99, 242, 305, 375
BstSCI CCNGG 1 cut(s) 240
BstV1I GCAGC 1 cut(s) 434
BstV2I GAAGAC 1 cut(s) 534
BstXI CCANNNNNNTGG 1 cut(s) 211
BsuRI GGCC 7 cut(s) 239, 245, 345, 357, 404, 570, 589
BtgZI GCGATG 1 cut(s) 48
BtsCI GGATG 2 cut(s) 553, 585
Cac8I GCNNGC 2 cut(s) 95, 255
CaiI CAGNNNCTG 2 cut(s) 93, 425
Cfr10I RCCGGY 2 cut(s) 29, 589
Cfr13I GGNCC 4 cut(s) 238, 344, 355, 569
CseI GACGC 2 cut(s) 259, 288
Csp6I GTAC 1 cut(s) 450
CviAII CATG 1 cut(s) 523
CviQI GTAC 1 cut(s) 450
DpnI GATC 2 cut(s) 471, 604
DpnII GATC 2 cut(s) 469, 602
EaeI YGGCCR 1 cut(s) 243
Eco130I CCWWGG 1 cut(s) 279
Eco32I GATATC 1 cut(s) 7
Eco88I CYCGRG 1 cut(s) 571
EcoRV GATATC 1 cut(s) 7
EcoT14I CCWWGG 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 1 cut(s) 526
FaiI YATR 5 cut(s) 144, 162, 318, 524, 617
FalI AAGNNNNNCTT 2 cut(s) 142, 174
FatI CATG 1 cut(s) 522
FauI CCCGC 1 cut(s) 272
FblI GTMKAC 1 cut(s) 51
Fnu4HI GCNGC 4 cut(s) 234, 237, 423, 568
FokI GGATG 2 cut(s) 560, 592
Fsp4HI GCNGC 4 cut(s) 234, 237, 423, 568
FspBI CTAG 3 cut(s) 180, 254, 453
GluI GCNGC 4 cut(s) 234, 237, 423, 568
HaeIII GGCC 7 cut(s) 239, 245, 345, 357, 404, 570, 589
HapII CCGG 4 cut(s) 30, 242, 258, 590
HgaI GACGC 2 cut(s) 259, 288
Hin1I GRCGYC 1 cut(s) 299
Hin1II CATG 1 cut(s) 526
HincII GTYRAC 1 cut(s) 52
HindII GTYRAC 1 cut(s) 52
HinfI GANTC 2 cut(s) 416, 508
HpaII CCGG 4 cut(s) 30, 242, 258, 590
HphI GGTGA 3 cut(s) 298, 477, 604
Hpy166II GTNNAC 1 cut(s) 52
Hpy188I TCNGA 2 cut(s) 75, 149
Hpy188III TCNNGA 1 cut(s) 635
Hpy8I GTNNAC 1 cut(s) 52
Hpy99I CGWCG 7 cut(s) 53, 86, 304, 307, 542, 545, 560
HpyAV CCTTC 8 cut(s) 100, 113, 144, 217, 286, 489, 557, 589
HpyCH4IV ACGT 3 cut(s) 48, 174, 495
HpyCH4V TGCA 2 cut(s) 102, 437
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 99, 242, 305, 375
HpySE526I ACGT 3 cut(s) 48, 174, 495
Hsp92I GRCGYC 1 cut(s) 299
Hsp92II CATG 1 cut(s) 526
Kzo9I GATC 2 cut(s) 469, 602
LmnI GCTCC 2 cut(s) 90, 552
LpnPI CCDG 8 cut(s) 43, 73, 79, 255, 271, 286, 411, 603
Lsp1109I GCAGC 1 cut(s) 434
MaeI CTAG 3 cut(s) 180, 254, 453
MaeII ACGT 3 cut(s) 48, 174, 495
MaeIII GTNAC 3 cut(s) 134, 164, 175
MalI GATC 2 cut(s) 471, 604
MboI GATC 2 cut(s) 469, 602
MboII GAAGA 7 cut(s) 88, 188, 232, 301, 474, 539, 572
MfeI CAATTG 2 cut(s) 60, 512
MluCI AATT 3 cut(s) 60, 512, 618
MlyI GAGTC 1 cut(s) 425
MmeI TCCRAC 2 cut(s) 21, 228
MseI TTAA 1 cut(s) 621
MspA1I CMGCKG 1 cut(s) 425
MspI CCGG 4 cut(s) 30, 242, 258, 590
MspR9I CCNGG 1 cut(s) 242
MunI CAATTG 2 cut(s) 60, 512
MwoI GCNNNNNNNGC 5 cut(s) 23, 99, 242, 305, 375
NciI CCSGG 1 cut(s) 242
NdeII GATC 2 cut(s) 469, 602
NheI GCTAGC 1 cut(s) 253
NlaIII CATG 1 cut(s) 526
NlaIV GGNNCC 3 cut(s) 240, 262, 356
NmuCI GTSAC 1 cut(s) 134
NspV TTCGAA 1 cut(s) 218
PcsI WCGNNNNNNNCGW 1 cut(s) 537
PfeI GAWTC 1 cut(s) 508
PkrI GCNGC 4 cut(s) 235, 238, 424, 569
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
PshBI ATTAAT 1 cut(s) 621
Psp1406I AACGTT 2 cut(s) 174, 495
PspN4I GGNNCC 3 cut(s) 240, 262, 356
PspPI GGNCC 4 cut(s) 238, 344, 355, 569
PstNI CAGNNNCTG 2 cut(s) 93, 425
PvuII CAGCTG 1 cut(s) 425
RsaI GTAC 1 cut(s) 451
RsaNI GTAC 1 cut(s) 450
SalI GTCGAC 1 cut(s) 50
SaqAI TTAA 1 cut(s) 621
SatI GCNGC 4 cut(s) 234, 237, 423, 568
Sau3AI GATC 2 cut(s) 469, 602
Sau96I GGNCC 4 cut(s) 238, 344, 355, 569
ScaI AGTACT 1 cut(s) 451
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 1 cut(s) 242
SfuI TTCGAA 1 cut(s) 218
SmlI CTYRAG 1 cut(s) 633
SmoI CTYRAG 1 cut(s) 633
SpeI ACTAGT 1 cut(s) 452
Sse9I AATT 3 cut(s) 60, 512, 618
SsiI CCGC 5 cut(s) 233, 236, 265, 284, 567
SspI AATATT 2 cut(s) 193, 412
SspMI CTAG 3 cut(s) 180, 254, 453
StyD4I CCNGG 1 cut(s) 240
StyI CCWWGG 1 cut(s) 279
TaiI ACGT 3 cut(s) 51, 177, 498
TaqI TCGA 5 cut(s) 9, 51, 218, 537, 601
TasI AATT 3 cut(s) 60, 512, 618
TatI WGTACW 1 cut(s) 449
TauI GCSGC 3 cut(s) 236, 239, 570
TfiI GAWTC 1 cut(s) 508
Tru1I TTAA 1 cut(s) 621
Tru9I TTAA 1 cut(s) 621
TseFI GTSAC 1 cut(s) 134
TseI GCWGC 1 cut(s) 422
Tsp45I GTSAC 1 cut(s) 134
VspI ATTAAT 1 cut(s) 621
XmiI GTMKAC 1 cut(s) 51
XspI CTAG 3 cut(s) 180, 254, 453
ZrmI AGTACT 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.