RLG00000028080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0003426
Physical Location & Seq
Forward (+)
18393763 .. 18396476
2714 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028080

Sequence Viewer

Length: 726 bp
ATGGCCACATATCTGCAAACTGAATCAATCTCCGTGGGACGTCAATCCCCCTCCAGAGGAAGATTTAAACGTGTATGGAAGCCTATTGGAGCTACAAAAAGCACTGCGTTGCCATCCAGGATGGATATCAACAAAGTGACTATTGATGTTGAAGAGGATTCAAAAGGGCTTGATGAAGGCAATGAAATTGGGTTCAAGAAGTGGAAGATATGTAAAAAGAATGATGGAAAAGGGTGGAAGTGTAGAAAGGAAGTGAAGGAAGGGTACTCATTTTGCAATAACCACATAACCCTTATTAGGTCTTACCATAATACTAGCAGCAACAATGCTACTAGCAATGCTAACAAGTCCTTGTCTTTCAAGAAGCCCAAGGTGACCACGAGAAAGGCTCCTGAGCCCAAGGAGAAAAAGGGCTCGTCCTCGAAGTCTAATGACTATATATACTACTCGCTTTTTAGTCCATGGTGGAATCAGAATAGAAGGACTATAGTGGAGGAACAGATCGCAAAGAGTATTGCTGTTGAAAATGGTGCTACTACATCCTCTACTAGTGTAGCTACTCCAAATCAAGATCCTCCATCACCTAAGGCTGATCGAGGTTTGTGGGGAAAGTCAGAGGATGATTTTGATGATGATGATGGGGACGAGGATGGGCATGGAGAATGTGGGCAGAAGTGGATGAGGATGCATGTGAAGGCTAGAACTTTGAAGTCCCTAATGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WRC

Protein Analysis

242

Amino Acids

27.15

Weight (kDa)

9.41

Isoelectric Point (pI)

47.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRC PF08879 71 - 106 1.7e-09 WRC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 43
AclWI GGATC 1 cut(s) 566
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 40
AfaI GTAC 1 cut(s) 266
AfiI CCNNNNNNNGG 2 cut(s) 56, 297
AflIII ACRYGT 1 cut(s) 70
AgsI TTSAA 6 cut(s) 152, 162, 196, 361, 524, 709
AhlI ACTAGT 1 cut(s) 548
AjnI CCWGG 1 cut(s) 116
AluBI AGCT 2 cut(s) 92, 557
AluI AGCT 2 cut(s) 92, 557
AlwI GGATC 1 cut(s) 566
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 318
AsuHPI GGTGA 2 cut(s) 385, 573
AxyI CCTNAGG 1 cut(s) 585
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 2 cut(s) 399, 416
BarI GAAGNNNNNNTAC 2 cut(s) 248, 280
BauI CACGAG 1 cut(s) 379
BbvI GCAGC 1 cut(s) 330
BccI CCATC 6 cut(s) 115, 121, 218, 586, 632, 644
BciT130I CCWGG 1 cut(s) 118
BcuI ACTAGT 1 cut(s) 548
BfaI CTAG 4 cut(s) 315, 333, 549, 699
BfmI CTRYAG 1 cut(s) 486
BisI GCNGC 1 cut(s) 319
BlsI GCNGC 1 cut(s) 320
Bme1390I CCNGG 1 cut(s) 118
BmiI GGNNCC 1 cut(s) 390
BmrFI CCNGG 1 cut(s) 118
BmsI GCATC 1 cut(s) 675
BplI GAGNNNNNCTC 2 cut(s) 373, 405
BpmI CTGGAG 1 cut(s) 37
Bpu10I CCTNAGC 1 cut(s) 393
BsaBI GATNNNNATC 1 cut(s) 125
BsaHI GRCGYC 1 cut(s) 40
BsaJI CCNNGG 4 cut(s) 33, 369, 399, 461
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 297
Bse21I CCTNAGG 1 cut(s) 585
Bse3DI GCAATG 2 cut(s) 187, 343
Bse8I GATNNNNATC 1 cut(s) 125
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 4 cut(s) 33, 369, 399, 461
BseGI GGATG 7 cut(s) 113, 126, 539, 625, 655, 684, 690
BseJI GATNNNNATC 1 cut(s) 125
BseLI CCNNNNNNNGG 2 cut(s) 56, 297
BseMI GCAATG 2 cut(s) 187, 343
BseMII CTCAG 1 cut(s) 384
BseXI GCAGC 1 cut(s) 330
BshFI GGCC 1 cut(s) 5
BslFI GGGAC 3 cut(s) 51, 656, 697
BslI CCNNNNNNNGG 2 cut(s) 56, 297
BsmFI GGGAC 3 cut(s) 51, 656, 697
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 2 cut(s) 399, 416
Bsp143I GATC 3 cut(s) 501, 571, 592
Bsp19I CCATGG 1 cut(s) 461
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 385
BspLI GGNNCC 1 cut(s) 390
BspPI GGATC 1 cut(s) 566
BsrDI GCAATG 2 cut(s) 187, 343
BssECI CCNNGG 4 cut(s) 33, 369, 399, 461
BssMI GATC 3 cut(s) 501, 571, 592
BssNI GRCGYC 1 cut(s) 40
BssSI CACGAG 1 cut(s) 379
BssT1I CCWWGG 3 cut(s) 369, 399, 461
Bst2BI CACGAG 1 cut(s) 379
Bst2UI CCWGG 1 cut(s) 118
Bst6I CTCTTC 1 cut(s) 147
BstACI GRCGYC 1 cut(s) 40
BstDEI CTNAG 2 cut(s) 393, 585
BstDSI CCRYGG 2 cut(s) 33, 461
BstEII GGTNACC 1 cut(s) 373
BstF5I GGATG 7 cut(s) 113, 126, 539, 625, 655, 684, 690
BstKTI GATC 3 cut(s) 504, 574, 595
BstMBI GATC 3 cut(s) 501, 571, 592
BstNI CCWGG 1 cut(s) 118
BstNSI RCATGY 1 cut(s) 692
BstPI GGTNACC 1 cut(s) 373
BstSCI CCNGG 1 cut(s) 116
BstSFI CTRYAG 1 cut(s) 486
BstV1I GCAGC 1 cut(s) 330
BstX2I RGATCY 1 cut(s) 571
BstYI RGATCY 1 cut(s) 571
Bsu36I CCTNAGG 1 cut(s) 585
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 2 cut(s) 33, 461
BtsCI GGATG 7 cut(s) 113, 126, 539, 625, 655, 684, 690
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 102
Csp6I GTAC 1 cut(s) 265
CspCI CAANNNNNGTGG 2 cut(s) 15, 50
CviAII CATG 3 cut(s) 462, 656, 689
CviQI GTAC 1 cut(s) 265
DdeI CTNAG 2 cut(s) 393, 585
DpnI GATC 3 cut(s) 503, 573, 594
DpnII GATC 3 cut(s) 501, 571, 592
DraI TTTAAA 1 cut(s) 67
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
Eco130I CCWWGG 3 cut(s) 369, 399, 461
Eco24I GRGCYC 2 cut(s) 399, 416
Eco32I GATATC 1 cut(s) 127
Eco81I CCTNAGG 1 cut(s) 585
Eco91I GGTNACC 1 cut(s) 373
EcoO65I GGTNACC 1 cut(s) 373
EcoRII CCWGG 1 cut(s) 116
EcoRV GATATC 1 cut(s) 127
EcoT14I CCWWGG 3 cut(s) 369, 399, 461
EcoT22I ATGCAT 1 cut(s) 690
EcoT38I GRGCYC 2 cut(s) 399, 416
ErhI CCWWGG 3 cut(s) 369, 399, 461
FaeI CATG 3 cut(s) 465, 659, 692
FaqI GGGAC 3 cut(s) 51, 656, 697
FatI CATG 3 cut(s) 461, 655, 688
Fnu4HI GCNGC 1 cut(s) 319
FokI GGATG 7 cut(s) 100, 133, 526, 632, 662, 691, 697
FriOI GRGCYC 2 cut(s) 399, 416
Fsp4HI GCNGC 1 cut(s) 319
FspBI CTAG 4 cut(s) 315, 333, 549, 699
GluI GCNGC 1 cut(s) 319
GsuI CTGGAG 1 cut(s) 37
HaeIII GGCC 1 cut(s) 5
Hin1I GRCGYC 1 cut(s) 40
Hin1II CATG 3 cut(s) 465, 659, 692
HinfI GANTC 3 cut(s) 23, 158, 469
HphI GGTGA 2 cut(s) 385, 573
Hpy188I TCNGA 2 cut(s) 474, 616
Hpy188III TCNNGA 5 cut(s) 54, 196, 361, 392, 569
HpyAV CCTTC 5 cut(s) 170, 250, 254, 474, 688
HpyCH4IV ACGT 2 cut(s) 40, 70
HpyCH4V TGCA 3 cut(s) 16, 276, 688
HpyF3I CTNAG 2 cut(s) 393, 585
HpySE526I ACGT 2 cut(s) 40, 70
Hsp92I GRCGYC 1 cut(s) 40
Hsp92II CATG 3 cut(s) 465, 659, 692
Kzo9I GATC 3 cut(s) 501, 571, 592
LmnI GCTCC 2 cut(s) 89, 394
LpnPI CCDG 4 cut(s) 67, 103, 130, 405
Lsp1109I GCAGC 1 cut(s) 330
LweI GCATC 1 cut(s) 675
MaeI CTAG 4 cut(s) 315, 333, 549, 699
MaeII ACGT 2 cut(s) 40, 70
MaeIII GTNAC 2 cut(s) 136, 373
MalI GATC 3 cut(s) 503, 573, 594
MboI GATC 3 cut(s) 501, 571, 592
MboII GAAGA 3 cut(s) 72, 164, 217
MflI RGATCY 1 cut(s) 571
MhlI GDGCHC 2 cut(s) 399, 416
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 186
MluNI TGGCCA 1 cut(s) 5
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 690
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 66
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 118
MvaI CCWGG 1 cut(s) 118
NcoI CCATGG 1 cut(s) 461
NdeII GATC 3 cut(s) 501, 571, 592
NlaIII CATG 3 cut(s) 465, 659, 692
NlaIV GGNNCC 1 cut(s) 390
NmuCI GTSAC 2 cut(s) 136, 373
NsiI ATGCAT 1 cut(s) 690
NspI RCATGY 1 cut(s) 692
PfeI GAWTC 3 cut(s) 23, 158, 469
PfoI TCCNGGA 1 cut(s) 116
PkrI GCNGC 1 cut(s) 320
Psp6I CCWGG 1 cut(s) 116
PspEI GGTNACC 1 cut(s) 373
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 1 cut(s) 390
PsuI RGATCY 1 cut(s) 571
RsaI GTAC 1 cut(s) 266
RsaNI GTAC 1 cut(s) 265
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 1 cut(s) 319
Sau3AI GATC 3 cut(s) 501, 571, 592
ScrFI CCNGG 1 cut(s) 118
SduI GDGCHC 2 cut(s) 399, 416
SetI ASST 8 cut(s) 43, 73, 94, 302, 375, 559, 586, 601
SfaNI GCATC 1 cut(s) 675
SfcI CTRYAG 1 cut(s) 486
SpeI ACTAGT 1 cut(s) 548
Sse9I AATT 1 cut(s) 186
SspMI CTAG 4 cut(s) 315, 333, 549, 699
StyD4I CCNGG 1 cut(s) 116
StyI CCWWGG 3 cut(s) 369, 399, 461
TaiI ACGT 2 cut(s) 43, 73
TaqI TCGA 2 cut(s) 422, 595
TasI AATT 1 cut(s) 186
TfiI GAWTC 3 cut(s) 23, 158, 469
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 1 cut(s) 109
TseFI GTSAC 2 cut(s) 136, 373
TseI GCWGC 1 cut(s) 318
Tsp45I GTSAC 2 cut(s) 136, 373
TspDTI ATGAA 2 cut(s) 189, 198
TspGWI ACGGA 1 cut(s) 22
TspRI CASTG 1 cut(s) 109
XceI RCATGY 1 cut(s) 692
XspI CTAG 4 cut(s) 315, 333, 549, 699
ZraI GACGTC 1 cut(s) 41
Zsp2I ATGCAT 1 cut(s) 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.