Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003426

Physical Location & Seq

Genomic Coordinates Reverse (-)

47773395 .. 47784098

Gene Structure 10704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG260800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTCATGCTCATCTTCATCAGGATCGAAGGAGAACGATGAGAGTATCAACTCTTACATAAAACAAGGGTACCATGCTGAGATTTTGAGTAGGAGAAGAAATCAGAGGAGGAAGGACCTCTCGCTTCCAGGAAGCCGATGGTGTCGTCCTCGTTGCCCTTCATCTTTACCTTCTTCCCCAGACGATCGTTCAGCACCACCTCGATCATCTTCAATTCTTCTTCGAAAGTCCTTTTTGAGGGCCTGGTTGGGAGGAGCATTTCAGGGCTTTTTGATCAGCGGTAGATTTCGGGAACAGAGTGCTATCATATTCTCATATTCTCTGCACTCTTTGCAATCTCACCGAAAGATGAATGGTGATGGTTCAAAGGAGTCTTCTAAAGAAGTGTCTAAGCCCAAGGTGACCACGAGAGAGGCTCCTGAGGCCAAGGCGAAAAAGGGCTCGTCCTCGAAGTCTAATGACTATATATACTACTCGCTTTTTAGTCCATGGTGGAATCAGAATAGAAGGACTATAGTTGAGGAACAGACCGCGAAGAATATTGCTGTTGAAAATGGTGCTACTACATCCTCTACTAGTGTAGCTACTCCAAATCAAGATCCTCCATCACCCAAGGCTGGTAATCAGAATCAATCAGCTTATGTGGATGTCAATGAAGGCAACGATGATGGGAGCAACAAATGTCGCCGAAAGAGGATGAGGAAGCCTATGAAGGCTGTCCTTATTTCCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

244

Amino Acids

27.17

Weight (kDa)

10.07

Isoelectric Point (pI)

72.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00310 AT4G00310
fragaria_vesca	FvH4_7g14870 FvH4_7g14870 FvH4_7g14870 FvH4_7g14880 FvH4_7g14980 FvH4_7g14980 FvH4_7g14980
malus_domestica	MD01G1067400.v1.1 MD07G1133500.v1.1
prunus_persica	Prupe.2G173800_v2.0.a1
pyrus_communis	pycom01g09650 pycom07g13110
rosa_chinensis	RchiOBHm_Chr1g0357021
rosa_laevigata	RLG00000028060 RLG00000028080
rosa_multiflora	Rmu_sc0000166.1_g000038 Rmu_sc0002572.1_g000002 Rmu_sc0003212.1_g000001
rosa_roxburghii	Rroxscaffold_4G00299120 Rroxscaffold_4G00299300 Rroxscaffold_4G00299330
rosa_rugosa	Rorug01G0251500 Rorug01G0253100 Rorug01G0253200 Rorug01G0253300
rosa_samantha	Rh1AG265800 Rh1AG267300 Rh1BG233400 Rh1BG235100 Rh1CG249300 Rh1CG251300 Rh1DG260800 Rh1DG262500
rosa_wichuraiana	Rw1G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	69
AccB1I	GGYRCC	1 cut(s)	69
AccII	CGCG	1 cut(s)	533
AciI	CCGC	2 cut(s)	279, 531
AclWI	GGATC	2 cut(s)	31, 593
AfaI	GTAC	1 cut(s)	71
AfiI	CCNNNNNNNGG	2 cut(s)	237, 617
AgsI	TTSAA	3 cut(s)	213, 366, 551
AhlI	ACTAGT	1 cut(s)	575
AjnI	CCWGG	2 cut(s)	127, 242
AluBI	AGCT	3 cut(s)	584, 638, 732
AluI	AGCT	3 cut(s)	584, 638, 732
AlwI	GGATC	2 cut(s)	31, 593
AoxI	GGCC	2 cut(s)	240, 423
Asp718I	GGTACC	1 cut(s)	69
AspS9I	GGNCC	2 cut(s)	115, 240
AsuHPI	GGTGA	4 cut(s)	332, 368, 412, 600
AsuII	TTCGAA	1 cut(s)	223
AvaII	GGWCC	1 cut(s)	115
AxyI	CCTNAGG	1 cut(s)	420
BaeI	ACNNNNGTAYC	2 cut(s)	53, 86
BanI	GGYRCC	1 cut(s)	69
BanII	GRGCYC	1 cut(s)	443
BauI	CACGAG	1 cut(s)	406
BbsI	GAAGAC	1 cut(s)	366
BccI	CCATC	4 cut(s)	132, 353, 613, 662
BciT130I	CCWGG	2 cut(s)	129, 244
BclI	TGATCA	1 cut(s)	273
BcuI	ACTAGT	1 cut(s)	575
BfaI	CTAG	1 cut(s)	576
BfmI	CTRYAG	1 cut(s)	513
Bme1390I	CCNGG	2 cut(s)	129, 244
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	2 cut(s)	115, 240
BmiI	GGNNCC	2 cut(s)	71, 417
BmrFI	CCNGG	2 cut(s)	129, 244
BpiI	GAAGAC	1 cut(s)	366
BplI	GAGNNNNNCTC	2 cut(s)	400, 432
Bpu14I	TTCGAA	1 cut(s)	223
BsaJI	CCNNGG	4 cut(s)	396, 426, 488, 612
Bsc4I	CCNNNNNNNGG	2 cut(s)	237, 617
Bse21I	CCTNAGG	1 cut(s)	420
BseBI	CCWGG	2 cut(s)	129, 244
BseDI	CCNNGG	4 cut(s)	396, 426, 488, 612
BseGI	GGATG	3 cut(s)	566, 652, 702
BseLI	CCNNNNNNNGG	2 cut(s)	237, 617
BseMII	CTCAG	2 cut(s)	69, 411
BseRI	GAGGAG	2 cut(s)	121, 267
BsgI	GTGCAG	1 cut(s)	308
Bsh1236I	CGCG	1 cut(s)	533
Bsh1285I	CGRYCG	1 cut(s)	187
BshFI	GGCC	2 cut(s)	242, 425
BshNI	GGYRCC	1 cut(s)	69
BsiEI	CGRYCG	1 cut(s)	187
BslI	CCNNNNNNNGG	2 cut(s)	237, 617
BsnI	GGCC	2 cut(s)	242, 425
Bsp119I	TTCGAA	1 cut(s)	223
Bsp1286I	GDGCHC	1 cut(s)	443
Bsp143I	GATC	5 cut(s)	23, 184, 203, 273, 598
Bsp19I	CCATGG	1 cut(s)	488
BspACI	CCGC	2 cut(s)	279, 531
BspANI	GGCC	2 cut(s)	242, 425
BspCNI	CTCAG	2 cut(s)	70, 412
BspFNI	CGCG	1 cut(s)	533
BspLI	GGNNCC	2 cut(s)	71, 417
BspPI	GGATC	2 cut(s)	31, 593
BspT104I	TTCGAA	1 cut(s)	223
BspT107I	GGYRCC	1 cut(s)	69
BssECI	CCNNGG	4 cut(s)	396, 426, 488, 612
BssMI	GATC	5 cut(s)	23, 184, 203, 273, 598
BssSI	CACGAG	1 cut(s)	406
BssT1I	CCWWGG	4 cut(s)	396, 426, 488, 612
Bst2BI	CACGAG	1 cut(s)	406
Bst2UI	CCWGG	2 cut(s)	129, 244
BstAPI	GCANNNNNTGC	1 cut(s)	331
BstBI	TTCGAA	1 cut(s)	223
BstDEI	CTNAG	3 cut(s)	78, 390, 420
BstDSI	CCRYGG	1 cut(s)	488
BstEII	GGTNACC	1 cut(s)	400
BstENI	CCTNNNNNAGG	1 cut(s)	235
BstF5I	GGATG	3 cut(s)	566, 652, 702
BstFNI	CGCG	1 cut(s)	533
BstKTI	GATC	5 cut(s)	26, 187, 206, 276, 601
BstMBI	GATC	5 cut(s)	23, 184, 203, 273, 598
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	2 cut(s)	331, 422
BstNI	CCWGG	2 cut(s)	129, 244
BstPI	GGTNACC	1 cut(s)	400
BstSCI	CCNGG	2 cut(s)	127, 242
BstSFI	CTRYAG	1 cut(s)	513
BstUI	CGCG	1 cut(s)	533
BstV2I	GAAGAC	1 cut(s)	366
BstX2I	RGATCY	1 cut(s)	598
BstYI	RGATCY	1 cut(s)	598
Bsu36I	CCTNAGG	1 cut(s)	420
BsuRI	GGCC	2 cut(s)	242, 425
BtgI	CCRYGG	1 cut(s)	488
BtsCI	GGATG	3 cut(s)	566, 652, 702
Cfr13I	GGNCC	2 cut(s)	115, 240
Csp6I	GTAC	1 cut(s)	70
CviAII	CATG	3 cut(s)	6, 74, 489
CviQI	GTAC	1 cut(s)	70
DdeI	CTNAG	3 cut(s)	78, 390, 420
DpnI	GATC	5 cut(s)	25, 186, 205, 275, 600
DpnII	GATC	5 cut(s)	23, 184, 203, 273, 598
Eco130I	CCWWGG	4 cut(s)	396, 426, 488, 612
Eco24I	GRGCYC	1 cut(s)	443
Eco47I	GGWCC	1 cut(s)	115
Eco81I	CCTNAGG	1 cut(s)	420
Eco91I	GGTNACC	1 cut(s)	400
EcoNI	CCTNNNNNAGG	1 cut(s)	235
EcoO109I	RGGNCCY	2 cut(s)	115, 240
EcoO65I	GGTNACC	1 cut(s)	400
EcoRII	CCWGG	2 cut(s)	127, 242
EcoT14I	CCWWGG	4 cut(s)	396, 426, 488, 612
EcoT38I	GRGCYC	1 cut(s)	443
ErhI	CCWWGG	4 cut(s)	396, 426, 488, 612
FaeI	CATG	3 cut(s)	9, 77, 492
FatI	CATG	3 cut(s)	5, 73, 488
FbaI	TGATCA	1 cut(s)	273
FokI	GGATG	3 cut(s)	553, 659, 709
FriOI	GRGCYC	1 cut(s)	443
FspBI	CTAG	1 cut(s)	576
HaeIII	GGCC	2 cut(s)	242, 425
Hin1II	CATG	3 cut(s)	9, 77, 492
HinfI	GANTC	3 cut(s)	371, 496, 628
HphI	GGTGA	4 cut(s)	332, 368, 412, 600
Hpy188I	TCNGA	3 cut(s)	105, 501, 627
Hpy188III	TCNNGA	4 cut(s)	21, 290, 419, 596
HpyAV	CCTTC	7 cut(s)	22, 106, 168, 180, 501, 650, 706
HpyCH4V	TGCA	2 cut(s)	325, 334
HpyF10VI	GCNNNNNNNGC	2 cut(s)	331, 422
HpyF3I	CTNAG	3 cut(s)	78, 390, 420
Hsp92II	CATG	3 cut(s)	9, 77, 492
KpnI	GGTACC	1 cut(s)	73
Ksp22I	TGATCA	1 cut(s)	273
Kzo9I	GATC	5 cut(s)	23, 184, 203, 273, 598
LmnI	GCTCC	3 cut(s)	254, 421, 672
LpnPI	CCDG	9 cut(s)	6, 114, 141, 192, 229, 248, 256, 432, 603
MaeI	CTAG	1 cut(s)	576
MaeIII	GTNAC	1 cut(s)	400
MalI	GATC	5 cut(s)	25, 186, 205, 275, 600
MboI	GATC	5 cut(s)	23, 184, 203, 273, 598
MboII	GAAGA	8 cut(s)	6, 108, 165, 201, 209, 212, 366, 547
MflI	RGATCY	1 cut(s)	598
MhlI	GDGCHC	1 cut(s)	443
MluCI	AATT	1 cut(s)	213
MlyI	GAGTC	1 cut(s)	380
MspA1I	CMGCKG	2 cut(s)	279, 732
MspR9I	CCNGG	2 cut(s)	129, 244
MvaI	CCWGG	2 cut(s)	129, 244
MvnI	CGCG	1 cut(s)	533
MwoI	GCNNNNNNNGC	2 cut(s)	331, 422
NcoI	CCATGG	1 cut(s)	488
NdeII	GATC	5 cut(s)	23, 184, 203, 273, 598
NlaIII	CATG	3 cut(s)	9, 77, 492
NlaIV	GGNNCC	2 cut(s)	71, 417
NmuCI	GTSAC	1 cut(s)	400
NspV	TTCGAA	1 cut(s)	223
PfeI	GAWTC	2 cut(s)	496, 628
PfoI	TCCNGGA	1 cut(s)	127
Ple19I	CGATCG	1 cut(s)	187
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
PpuMI	RGGWCCY	1 cut(s)	115
Psp5II	RGGWCCY	1 cut(s)	115
Psp6I	CCWGG	2 cut(s)	127, 242
PspEI	GGTNACC	1 cut(s)	400
PspGI	CCWGG	2 cut(s)	127, 242
PspN4I	GGNNCC	2 cut(s)	71, 417
PspPI	GGNCC	2 cut(s)	115, 240
PspPPI	RGGWCCY	1 cut(s)	115
PsuI	RGATCY	1 cut(s)	598
PvuI	CGATCG	1 cut(s)	187
PvuII	CAGCTG	1 cut(s)	732
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
Sau3AI	GATC	5 cut(s)	23, 184, 203, 273, 598
Sau96I	GGNCC	2 cut(s)	115, 240
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	2 cut(s)	129, 244
SduI	GDGCHC	1 cut(s)	443
SetI	ASST	7 cut(s)	120, 172, 202, 402, 586, 640, 734
SfcI	CTRYAG	1 cut(s)	513
SfuI	TTCGAA	1 cut(s)	223
SinI	GGWCC	1 cut(s)	115
SpeI	ACTAGT	1 cut(s)	575
Sse9I	AATT	1 cut(s)	213
SsiI	CCGC	2 cut(s)	279, 531
SspI	AATATT	1 cut(s)	541
SspMI	CTAG	1 cut(s)	576
StyD4I	CCNGG	2 cut(s)	127, 242
StyI	CCWWGG	4 cut(s)	396, 426, 488, 612
TaqI	TCGA	4 cut(s)	26, 202, 223, 449
TasI	AATT	1 cut(s)	213
TfiI	GAWTC	2 cut(s)	496, 628
TseFI	GTSAC	1 cut(s)	400
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	5 cut(s)	6, 150, 365, 669, 725
VpaK11BI	GGWCC	1 cut(s)	115
XagI	CCTNNNNNAGG	1 cut(s)	235
XcmI	CCANNNNNNNNNTGG	1 cut(s)	135
XspI	CTAG	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.