FvH4_7g14980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0003426
Physical Location & Seq
Forward (+)
13092432 .. 13094429
1998 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g14980.t1

Sequence Viewer

Length: 888 bp
ATGGTCAGGATCCGCAAGAACTTGAAGGTCTCGCCGCTCCAGTTCTTCCCCGACGTAGCTCCCGAGGATCTGCAGCCCCATATCTGCAAGCTGAACCAGTCCCCATGGGATTCCAGCTCATGCCCTTTCGACCTCGACTGCTCGTCGTCGGCGCTCCAGTTCCAAGGTGGGGAGGGTTTTATCGGAAATGGGAGCTTGGGGGATTCTATTGCAGCTGTCGAGAGCGTTGCGTCGCCGATGGATATCGACAAGGCAGAGGTGGCGGCCGGCGATGTGTCCGATAACGTCGAGAAAGTATTTGCCAGGTGTCAAAGGACCGACGGCAGGAGCTGGCAATGCAAGAAGGAAGCGAAAGAAGGTTTCTTATTTTGTGATCACCATCTCCGAAGATCGTCCGCTGGTAACAACAACGTTAATAGCAATGGCAATATTCTTCCCTCCAATTTCGTGGGTTCGAAAAAGGACACGACGGTCCAGGCCAAGACGCTAGCCGGAACCCGCCGTGGTCGGCCCAAGGCGGTGAAGAAGGGGCCGAACGCCGCGAACCCTTATGAATTCTACTACTATTCGGGATTCGGCCCCAAATGGGGCCGAAAGAGAGGCAAGAAAGGCCAGGTGGGGGAGGAGGAGGATGAAGAGAACGAGGAGGCTAATAATGTTGAGGCAGCAGCTGCAAATGTAGCAGCTTCTGCTAGTAGTAGTAGTGTTAACACCGATCCCCAACCTTCTTCACCTCACGACGTTGGTAATGGGGGTCAATTGGACTATATGGAAGACGACTTTGACGACGAGGATGGGAGCGACGAAGAAGGCTGCCCGAGGAGGATGAGGAGGCCGGTGAAGGCTCGATCCTTGATGTCCATAATCAATGTAAAAGCTCAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WRC

Protein Analysis

296

Amino Acids

32.04

Weight (kDa)

5.33

Isoelectric Point (pI)

60.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRC PF08879 102 - 136 6.5e-10 WRC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 470
AccBSI CCGCTC 1 cut(s) 37
AccII CGCG 1 cut(s) 542
AciI CCGC 7 cut(s) 13, 35, 263, 396, 499, 518, 540
AclI AACGTT 1 cut(s) 411
AclWI GGATC 5 cut(s) 4, 17, 75, 710, 843
AcoI YGGCCR 1 cut(s) 264
AcsI RAATTY 1 cut(s) 554
AfiI CCNNNNNNNGG 5 cut(s) 169, 324, 586, 587, 619
AgsI TTSAA 1 cut(s) 25
AhdI GACNNNNNGTC 1 cut(s) 142
AjnI CCWGG 3 cut(s) 302, 474, 612
AluBI AGCT 9 cut(s) 59, 91, 117, 195, 215, 330, 671, 686, 878
AluI AGCT 9 cut(s) 59, 91, 117, 195, 215, 330, 671, 686, 878
Alw26I GTCTC 1 cut(s) 34
AlwI GGATC 5 cut(s) 4, 17, 75, 710, 843
AlwNI CAGNNNCTG 3 cut(s) 330, 671, 689
Ama87I CYCGRG 2 cut(s) 62, 817
AoxI GGCC 8 cut(s) 264, 477, 509, 530, 577, 589, 610, 833
ApeKI GCWGC 7 cut(s) 73, 212, 665, 668, 671, 683, 813
ApoI RAATTY 1 cut(s) 554
AspLEI GCGC 1 cut(s) 154
AspS9I GGNCC 6 cut(s) 315, 472, 510, 530, 578, 589
AsuHPI GGTGA 4 cut(s) 368, 532, 723, 850
AsuII TTCGAA 1 cut(s) 455
AsuNHI GCTAGC 1 cut(s) 487
AvaI CYCGRG 2 cut(s) 62, 817
AvaII GGWCC 2 cut(s) 315, 472
BamHI GGATCC 1 cut(s) 9
BbsI GAAGAC 1 cut(s) 780
BbvI GCAGC 7 cut(s) 85, 224, 658, 677, 680, 695, 800
BccI CCATC 3 cut(s) 232, 387, 788
BceAI ACGGC 2 cut(s) 337, 486
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BciT130I CCWGG 3 cut(s) 304, 476, 614
BclI TGATCA 1 cut(s) 373
BcoDI GTCTC 1 cut(s) 34
BfaI CTAG 2 cut(s) 488, 693
BfmI CTRYAG 1 cut(s) 71
BfoI RGCGCY 1 cut(s) 155
Bme1390I CCNGG 3 cut(s) 304, 476, 614
Bme18I GGWCC 2 cut(s) 315, 472
BmeRI GACNNNNNGTC 1 cut(s) 142
BmeT110I CYCGRG 2 cut(s) 62, 817
BmgT120I GGNCC 6 cut(s) 315, 472, 510, 530, 578, 589
BmiI GGNNCC 5 cut(s) 11, 496, 531, 580, 590
BmrFI CCNGG 3 cut(s) 304, 476, 614
BmtI GCTAGC 1 cut(s) 491
BpiI GAAGAC 1 cut(s) 780
BpmI CTGGAG 2 cut(s) 23, 140
Bpu14I TTCGAA 1 cut(s) 455
BpuEI CTTGAG 1 cut(s) 864
BsaBI GATNNNNATC 2 cut(s) 242, 378
BsaI GGTCTC 1 cut(s) 34
BsaJI CCNNGG 6 cut(s) 63, 104, 163, 502, 513, 818
Bsc4I CCNNNNNNNGG 5 cut(s) 169, 324, 586, 587, 619
Bse118I RCCGGY 2 cut(s) 266, 835
Bse1I ACTGG 3 cut(s) 40, 97, 157
Bse3DI GCAATG 2 cut(s) 341, 427
Bse8I GATNNNNATC 2 cut(s) 242, 378
BseBI CCWGG 3 cut(s) 304, 476, 614
BseDI CCNNGG 6 cut(s) 63, 104, 163, 502, 513, 818
BseGI GGATG 3 cut(s) 637, 799, 831
BseJI GATNNNNATC 2 cut(s) 242, 378
BseLI CCNNNNNNNGG 5 cut(s) 169, 324, 586, 587, 619
BseMI GCAATG 2 cut(s) 341, 427
BseNI ACTGG 3 cut(s) 40, 97, 157
BseRI GAGGAG 5 cut(s) 638, 641, 659, 835, 844
BseX3I CGGCCG 1 cut(s) 264
BseXI GCAGC 7 cut(s) 85, 224, 658, 677, 680, 695, 800
Bsh1236I CGCG 1 cut(s) 542
Bsh1285I CGRYCG 1 cut(s) 267
BshFI GGCC 8 cut(s) 266, 479, 511, 532, 579, 591, 612, 835
BsiEI CGRYCG 1 cut(s) 267
BsiHKCI CYCGRG 2 cut(s) 62, 817
BsiSI CCGG 3 cut(s) 267, 492, 836
BslFI GGGAC 1 cut(s) 85
BslI CCNNNNNNNGG 5 cut(s) 169, 324, 586, 587, 619
BsmAI GTCTC 1 cut(s) 34
BsmFI GGGAC 1 cut(s) 85
BsnI GGCC 8 cut(s) 266, 479, 511, 532, 579, 591, 612, 835
Bso31I GGTCTC 1 cut(s) 34
BsoBI CYCGRG 2 cut(s) 62, 817
Bsp119I TTCGAA 1 cut(s) 455
Bsp143I GATC 6 cut(s) 9, 67, 373, 389, 715, 848
Bsp19I CCATGG 1 cut(s) 104
BspACI CCGC 7 cut(s) 13, 35, 263, 396, 499, 518, 540
BspANI GGCC 8 cut(s) 266, 479, 511, 532, 579, 591, 612, 835
BspFNI CGCG 1 cut(s) 542
BspLI GGNNCC 5 cut(s) 11, 496, 531, 580, 590
BspMAI CTGCAG 1 cut(s) 75
BspOI GCTAGC 1 cut(s) 491
BspPI GGATC 5 cut(s) 4, 17, 75, 710, 843
BspT104I TTCGAA 1 cut(s) 455
BspTNI GGTCTC 1 cut(s) 34
BsrBI CCGCTC 1 cut(s) 37
BsrDI GCAATG 2 cut(s) 341, 427
BsrFI RCCGGY 2 cut(s) 266, 835
BsrI ACTGG 3 cut(s) 40, 97, 157
BssAI RCCGGY 2 cut(s) 266, 835
BssECI CCNNGG 6 cut(s) 63, 104, 163, 502, 513, 818
BssMI GATC 6 cut(s) 9, 67, 373, 389, 715, 848
BssT1I CCWWGG 3 cut(s) 104, 163, 513
Bst2UI CCWGG 3 cut(s) 304, 476, 614
Bst4CI ACNGT 1 cut(s) 472
Bst6I CTCTTC 1 cut(s) 630
BstAPI GCANNNNNTGC 2 cut(s) 671, 689
BstBI TTCGAA 1 cut(s) 455
BstC8I GCNNGC 4 cut(s) 89, 268, 332, 489
BstDSI CCRYGG 2 cut(s) 104, 502
BstF5I GGATG 3 cut(s) 637, 799, 831
BstFNI CGCG 1 cut(s) 542
BstH2I RGCGCY 1 cut(s) 155
BstHHI GCGC 1 cut(s) 154
BstKTI GATC 6 cut(s) 12, 70, 376, 392, 718, 851
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 6 cut(s) 9, 67, 373, 389, 715, 848
BstMCI CGRYCG 1 cut(s) 267
BstMWI GCNNNNNNNGC 6 cut(s) 260, 336, 609, 671, 680, 689
BstNI CCWGG 3 cut(s) 304, 476, 614
BstSCI CCNGG 3 cut(s) 302, 474, 612
BstSFI CTRYAG 1 cut(s) 71
BstUI CGCG 1 cut(s) 542
BstV1I GCAGC 7 cut(s) 85, 224, 658, 677, 680, 695, 800
BstV2I GAAGAC 1 cut(s) 780
BstX2I RGATCY 2 cut(s) 9, 67
BstXI CCANNNNNNTGG 1 cut(s) 448
BstYI RGATCY 2 cut(s) 9, 67
BstZI CGGCCG 1 cut(s) 264
BsuRI GGCC 8 cut(s) 266, 479, 511, 532, 579, 591, 612, 835
BtgI CCRYGG 2 cut(s) 104, 502
BtgZI GCGATG 1 cut(s) 285
BtsCI GGATG 3 cut(s) 637, 799, 831
Cac8I GCNNGC 4 cut(s) 89, 268, 332, 489
CaiI CAGNNNCTG 3 cut(s) 330, 671, 689
CfoI GCGC 1 cut(s) 154
Cfr10I RCCGGY 2 cut(s) 266, 835
Cfr13I GGNCC 6 cut(s) 315, 472, 510, 530, 578, 589
CseI GACGC 2 cut(s) 219, 493
CviAII CATG 2 cut(s) 105, 120
DpnI GATC 6 cut(s) 11, 69, 375, 391, 717, 850
DpnII GATC 6 cut(s) 9, 67, 373, 389, 715, 848
DrdI GACNNNNNNGTC 1 cut(s) 470
DriI GACNNNNNGTC 1 cut(s) 142
DseDI GACNNNNNNGTC 1 cut(s) 470
EaeI YGGCCR 1 cut(s) 264
EagI CGGCCG 1 cut(s) 264
Eam1104I CTCTTC 1 cut(s) 630
Eam1105I GACNNNNNGTC 1 cut(s) 142
EarI CTCTTC 1 cut(s) 630
EclXI CGGCCG 1 cut(s) 264
Eco130I CCWWGG 3 cut(s) 104, 163, 513
Eco31I GGTCTC 1 cut(s) 34
Eco32I GATATC 1 cut(s) 244
Eco47I GGWCC 2 cut(s) 315, 472
Eco52I CGGCCG 1 cut(s) 264
Eco88I CYCGRG 2 cut(s) 62, 817
EcoRI GAATTC 1 cut(s) 554
EcoRII CCWGG 3 cut(s) 302, 474, 612
EcoRV GATATC 1 cut(s) 244
EcoT14I CCWWGG 3 cut(s) 104, 163, 513
ErhI CCWWGG 3 cut(s) 104, 163, 513
FaeI CATG 2 cut(s) 108, 123
FaiI YATR 7 cut(s) 81, 106, 121, 552, 768, 770, 863
FaqI GGGAC 1 cut(s) 85
FatI CATG 2 cut(s) 104, 119
FauI CCCGC 1 cut(s) 506
FbaI TGATCA 1 cut(s) 373
FokI GGATG 3 cut(s) 644, 806, 838
FspBI CTAG 2 cut(s) 488, 693
GlaI GCGC 1 cut(s) 153
GsuI CTGGAG 2 cut(s) 23, 140
HaeII RGCGCY 1 cut(s) 155
HaeIII GGCC 8 cut(s) 266, 479, 511, 532, 579, 591, 612, 835
HapII CCGG 3 cut(s) 267, 492, 836
HgaI GACGC 2 cut(s) 219, 493
HhaI GCGC 1 cut(s) 154
Hin1II CATG 2 cut(s) 108, 123
Hin6I GCGC 1 cut(s) 152
HinP1I GCGC 1 cut(s) 152
HincII GTYRAC 1 cut(s) 709
HindII GTYRAC 1 cut(s) 709
HinfI GANTC 3 cut(s) 110, 203, 573
HpaI GTTAAC 1 cut(s) 709
HpaII CCGG 3 cut(s) 267, 492, 836
HphI GGTGA 4 cut(s) 368, 532, 723, 850
Hpy166II GTNNAC 1 cut(s) 709
Hpy188I TCNGA 3 cut(s) 185, 280, 386
Hpy188III TCNNGA 7 cut(s) 7, 62, 220, 289, 570, 737, 881
Hpy8I GTNNAC 1 cut(s) 709
HpyAV CCTTC 7 cut(s) 19, 337, 350, 520, 735, 803, 835
HpyCH4III ACNGT 1 cut(s) 472
HpyCH4IV ACGT 4 cut(s) 54, 285, 411, 741
HpyCH4V TGCA 5 cut(s) 73, 87, 212, 339, 674
HpyF10VI GCNNNNNNNGC 6 cut(s) 260, 336, 609, 671, 680, 689
HpySE526I ACGT 4 cut(s) 54, 285, 411, 741
Hsp92II CATG 2 cut(s) 108, 123
HspAI GCGC 1 cut(s) 152
KroI GCCGGC 1 cut(s) 266
KroNI GCCGGC 1 cut(s) 268
Ksp22I TGATCA 1 cut(s) 373
KspAI GTTAAC 1 cut(s) 709
Kzo9I GATC 6 cut(s) 9, 67, 373, 389, 715, 848
LmnI GCTCC 6 cut(s) 42, 64, 159, 192, 327, 798
Lsp1109I GCAGC 7 cut(s) 85, 224, 658, 677, 680, 695, 800
MaeI CTAG 2 cut(s) 488, 693
MaeII ACGT 4 cut(s) 54, 285, 411, 741
MaeIII GTNAC 1 cut(s) 401
MalI GATC 6 cut(s) 11, 69, 375, 391, 717, 850
MbiI CCGCTC 1 cut(s) 37
MboI GATC 6 cut(s) 9, 67, 373, 389, 715, 848
MboII GAAGA 8 cut(s) 37, 399, 425, 535, 647, 720, 785, 818
MfeI CAATTG 1 cut(s) 758
MflI RGATCY 2 cut(s) 9, 67
MluCI AATT 3 cut(s) 442, 554, 758
MroNI GCCGGC 1 cut(s) 266
MseI TTAA 2 cut(s) 414, 708
MspA1I CMGCKG 3 cut(s) 215, 398, 671
MspI CCGG 3 cut(s) 267, 492, 836
MspR9I CCNGG 3 cut(s) 304, 476, 614
MunI CAATTG 1 cut(s) 758
MvaI CCWGG 3 cut(s) 304, 476, 614
MvnI CGCG 1 cut(s) 542
MwoI GCNNNNNNNGC 6 cut(s) 260, 336, 609, 671, 680, 689
NaeI GCCGGC 1 cut(s) 268
NcoI CCATGG 1 cut(s) 104
NdeII GATC 6 cut(s) 9, 67, 373, 389, 715, 848
NgoMIV GCCGGC 1 cut(s) 266
NheI GCTAGC 1 cut(s) 487
NlaIII CATG 2 cut(s) 108, 123
NlaIV GGNNCC 5 cut(s) 11, 496, 531, 580, 590
NspV TTCGAA 1 cut(s) 455
PcsI WCGNNNNNNNCGW 2 cut(s) 60, 783
PdiI GCCGGC 1 cut(s) 268
PfeI GAWTC 3 cut(s) 110, 203, 573
Psp1406I AACGTT 1 cut(s) 411
Psp6I CCWGG 3 cut(s) 302, 474, 612
PspGI CCWGG 3 cut(s) 302, 474, 612
PspN4I GGNNCC 5 cut(s) 11, 496, 531, 580, 590
PspPI GGNCC 6 cut(s) 315, 472, 510, 530, 578, 589
PstI CTGCAG 1 cut(s) 75
PstNI CAGNNNCTG 3 cut(s) 330, 671, 689
PsuI RGATCY 2 cut(s) 9, 67
PvuII CAGCTG 2 cut(s) 215, 671
SaqAI TTAA 2 cut(s) 414, 708
Sau3AI GATC 6 cut(s) 9, 67, 373, 389, 715, 848
Sau96I GGNCC 6 cut(s) 315, 472, 510, 530, 578, 589
ScrFI CCNGG 3 cut(s) 304, 476, 614
SfcI CTRYAG 1 cut(s) 71
SfuI TTCGAA 1 cut(s) 455
SinI GGWCC 2 cut(s) 315, 472
SmlI CTYRAG 1 cut(s) 879
SmoI CTYRAG 1 cut(s) 879
Sse9I AATT 3 cut(s) 442, 554, 758
SsiI CCGC 7 cut(s) 13, 35, 263, 396, 499, 518, 540
SspI AATATT 1 cut(s) 430
SspMI CTAG 2 cut(s) 488, 693
StyD4I CCNGG 3 cut(s) 302, 474, 612
StyI CCWWGG 3 cut(s) 104, 163, 513
TaaI ACNGT 1 cut(s) 472
TaiI ACGT 4 cut(s) 57, 288, 414, 744
TaqI TCGA 7 cut(s) 129, 135, 219, 246, 288, 455, 847
TaqII GACCGA 1 cut(s) 332
TasI AATT 3 cut(s) 442, 554, 758
TauI GCSGC 3 cut(s) 37, 266, 542
TfiI GAWTC 3 cut(s) 110, 203, 573
Tru1I TTAA 2 cut(s) 414, 708
Tru9I TTAA 2 cut(s) 414, 708
TseI GCWGC 7 cut(s) 73, 212, 665, 668, 671, 683, 813
TspDTI ATGAA 2 cut(s) 567, 648
VpaK11BI GGWCC 2 cut(s) 315, 472
XapI RAATTY 1 cut(s) 554
XcmI CCANNNNNNNNNTGG 1 cut(s) 164
XspI CTAG 2 cut(s) 488, 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.