Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001458

Physical Location & Seq

Genomic Coordinates Forward (+)

2432252 .. 2433635

Gene Structure 1384 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G04780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGATATAATCTCACAGTTGCAAGAACAAGTGAATACGATTGCTGCTATCACTTTCAATGCTTTTGGGACACTGCAAAGGGATGCACCACCAGTCCAGCTTTCACCTAATTATCCTGAACCACCCGCTACAACTACGGTTACTGATGATGCTACGCCTTTTCCTGAGCAACCTAAGCAGCTCAGTGCTGGCTTAGTTAAGGCTGCTAAACAGTTTGATGCTTTGGTTGCTGCACTTCCTTTGTCAGAAGGTGGTGAAGGTGCTCAGCTCAAAAGAATCGCTGAACTCCAGGTGGAAAATGATCTTGTTGGTCAAGAACTCCAAAAGCAACTAGAGGCTGCAGAGAAGGAGCTAAAGCAAGTACAAGAGCTGTTTGGACAAGCTGCTGACAATTGCCTGAACATGAAGAAACCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009889 GO:0010468 GO:0010556 GO:0016592 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043076 GO:0043078 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0098542 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med21

Protein Analysis

139

Amino Acids

15.04

Weight (kDa)

4.46

Isoelectric Point (pI)

55.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med21	PF11221	1 - 129	4.2e-27	Subunit 21 of Mediator complex

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04780
fragaria_vesca	FvH4_3g18180 FvH4_3g18181 FvH4_4g21200
malus_domestica	MD10G1319700.v1.1
prunus_persica	Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1
pyrus_communis	pycom10g27060 pycom16g12330
rosa_chinensis	RchiOBHm_Chr4g0426811 RchiOBHm_Chr5g0030661 RchiOBHm_Chr5g0030681
rosa_laevigata	RLG00000007276 RLG00000033237 RLG00000033242 RLG00000033244
rosa_multiflora	Rmu_sc0000953.1_g000011 Rmu_sc0004341.1_g000003 Rmu_sc0004963.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049620 Rroxscaffold_1G00049630 Rroxscaffold_1G00049640 Rroxscaffold_5G00368780
rosa_rugosa	Rorug04G0215000 Rorug05G0120100 Rorug05G0120100
rosa_samantha	Rh4AG270000 Rh4BG276300 Rh4CG291000 Rh4DG273500 Rh5AG211500 Rh5AG211700 Rh5BG210400 Rh5BG210600 Rh5CG234200 Rh5DG215500 Rh5DG215600 Rh5DG215800 Rh5DG215900
rosa_wichuraiana	Rw4G023430 Rw5G019370 Rw5G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	126
AfaI	GTAC	1 cut(s)	363
AgsI	TTSAA	1 cut(s)	58
AjnI	CCWGG	1 cut(s)	288
AluBI	AGCT	6 cut(s)	100, 181, 268, 352, 370, 383
AluI	AGCT	6 cut(s)	100, 181, 268, 352, 370, 383
Alw21I	GWGCWC	1 cut(s)	265
ApeKI	GCWGC	6 cut(s)	44, 178, 203, 230, 338, 383
AsuHPI	GGTGA	2 cut(s)	96, 266
Bbv12I	GWGCWC	1 cut(s)	265
BbvI	GCAGC	6 cut(s)	31, 190, 190, 217, 325, 370
BciT130I	CCWGG	1 cut(s)	290
BfaI	CTAG	1 cut(s)	332
BfmI	CTRYAG	1 cut(s)	339
BisI	GCNGC	6 cut(s)	45, 179, 204, 231, 339, 384
BlpI	GCTNAGC	1 cut(s)	264
BlsI	GCNGC	6 cut(s)	46, 180, 205, 232, 340, 385
Bme1390I	CCNGG	1 cut(s)	290
BmrFI	CCNGG	1 cut(s)	290
BmsI	GCATC	3 cut(s)	73, 139, 208
BpmI	CTGGAG	1 cut(s)	272
Bpu10I	CCTNAGC	2 cut(s)	165, 174
Bpu1102I	GCTNAGC	1 cut(s)	264
Bse1I	ACTGG	1 cut(s)	92
BseBI	CCWGG	1 cut(s)	290
BseGI	GGATG	1 cut(s)	88
BseMII	CTCAG	3 cut(s)	156, 196, 278
BseNI	ACTGG	1 cut(s)	92
BseXI	GCAGC	6 cut(s)	31, 190, 190, 217, 325, 370
BsgI	GTGCAG	1 cut(s)	216
BsiHKAI	GWGCWC	1 cut(s)	265
BslFI	GGGAC	1 cut(s)	82
BsmFI	GGGAC	1 cut(s)	82
Bsp1286I	GDGCHC	1 cut(s)	265
Bsp143I	GATC	1 cut(s)	301
Bsp1720I	GCTNAGC	1 cut(s)	264
BspACI	CCGC	1 cut(s)	126
BspCNI	CTCAG	3 cut(s)	157, 195, 277
BspMAI	CTGCAG	1 cut(s)	343
BsrI	ACTGG	1 cut(s)	92
BssMI	GATC	1 cut(s)	301
Bst2UI	CCWGG	1 cut(s)	290
Bst4CI	ACNGT	3 cut(s)	18, 139, 213
BstC8I	GCNNGC	1 cut(s)	190
BstDEI	CTNAG	5 cut(s)	165, 174, 182, 193, 264
BstF5I	GGATG	1 cut(s)	88
BstKTI	GATC	1 cut(s)	304
BstMBI	GATC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	2 cut(s)	175, 227
BstNI	CCWGG	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	288
BstSFI	CTRYAG	1 cut(s)	339
BstV1I	GCAGC	6 cut(s)	31, 190, 190, 217, 325, 370
BtsCI	GGATG	1 cut(s)	88
BtsI	GCAGTG	1 cut(s)	71
BtsIMutI	CAGTG	2 cut(s)	71, 190
Cac8I	GCNNGC	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	362
CviAII	CATG	1 cut(s)	403
CviJI	RGCY	9 cut(s)	100, 181, 192, 203, 268, 338, 352, 370, 383
CviKI_1	RGCY	9 cut(s)	100, 181, 192, 203, 268, 338, 352, 370, 383
CviQI	GTAC	1 cut(s)	362
DdeI	CTNAG	5 cut(s)	165, 174, 182, 193, 264
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
EcoRII	CCWGG	1 cut(s)	288
FaeI	CATG	1 cut(s)	406
FaiI	YATR	2 cut(s)	8, 404
FaqI	GGGAC	1 cut(s)	82
FatI	CATG	1 cut(s)	402
FauI	CCCGC	1 cut(s)	133
Fnu4HI	GCNGC	6 cut(s)	45, 179, 204, 231, 339, 384
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	6 cut(s)	45, 179, 204, 231, 339, 384
FspBI	CTAG	1 cut(s)	332
GluI	GCNGC	6 cut(s)	45, 179, 204, 231, 339, 384
GsuI	CTGGAG	1 cut(s)	272
Hin1II	CATG	1 cut(s)	406
HinfI	GANTC	1 cut(s)	276
HphI	GGTGA	2 cut(s)	96, 266
Hpy188I	TCNGA	1 cut(s)	247
Hpy188III	TCNNGA	3 cut(s)	116, 164, 314
HpyAV	CCTTC	3 cut(s)	242, 251, 340
HpyCH4III	ACNGT	3 cut(s)	18, 139, 213
HpyCH4V	TGCA	5 cut(s)	22, 76, 86, 233, 341
HpyF10VI	GCNNNNNNNGC	2 cut(s)	175, 227
HpyF3I	CTNAG	5 cut(s)	165, 174, 182, 193, 264
Hsp92II	CATG	1 cut(s)	406
Kzo9I	GATC	1 cut(s)	301
LmnI	GCTCC	1 cut(s)	349
LpnPI	CCDG	8 cut(s)	105, 110, 129, 174, 177, 275, 302, 410
Lsp1109I	GCAGC	6 cut(s)	31, 190, 190, 217, 325, 370
LweI	GCATC	3 cut(s)	73, 139, 208
MaeI	CTAG	1 cut(s)	332
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	1 cut(s)	303
MboI	GATC	1 cut(s)	301
MboII	GAAGA	1 cut(s)	418
MfeI	CAATTG	1 cut(s)	391
MhlI	GDGCHC	1 cut(s)	265
MluCI	AATT	2 cut(s)	109, 391
MnlI	CCTC	1 cut(s)	328
MseI	TTAA	1 cut(s)	198
MspR9I	CCNGG	1 cut(s)	290
MunI	CAATTG	1 cut(s)	391
MvaI	CCWGG	1 cut(s)	290
MwoI	GCNNNNNNNGC	2 cut(s)	175, 227
NdeII	GATC	1 cut(s)	301
NlaIII	CATG	1 cut(s)	406
PfeI	GAWTC	1 cut(s)	276
PkrI	GCNGC	6 cut(s)	46, 180, 205, 232, 340, 385
Psp6I	CCWGG	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	288
PstI	CTGCAG	1 cut(s)	343
RsaI	GTAC	1 cut(s)	363
RsaNI	GTAC	1 cut(s)	362
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	6 cut(s)	45, 179, 204, 231, 339, 384
Sau3AI	GATC	1 cut(s)	301
ScrFI	CCNGG	1 cut(s)	290
SduI	GDGCHC	1 cut(s)	265
SfaNI	GCATC	3 cut(s)	73, 139, 208
SfcI	CTRYAG	1 cut(s)	339
Sse9I	AATT	2 cut(s)	109, 391
SsiI	CCGC	1 cut(s)	126
SspMI	CTAG	1 cut(s)	332
StyD4I	CCNGG	1 cut(s)	288
TaaI	ACNGT	3 cut(s)	18, 139, 213
TasI	AATT	2 cut(s)	109, 391
TatI	WGTACW	1 cut(s)	361
TfiI	GAWTC	1 cut(s)	276
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	2 cut(s)	78, 190
TseI	GCWGC	6 cut(s)	44, 178, 203, 230, 338, 383
TspDTI	ATGAA	1 cut(s)	419
TspRI	CASTG	2 cut(s)	78, 190
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.