Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001458

Physical Location & Seq

Genomic Coordinates Forward (+)

24952416 .. 24976627

Gene Structure 24212 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG211500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGATTCTCCACCAGGTTTCTCTTTGAAGCGGAAACGTGAACATCGACGTAAGCATGATAAGTCAGAACATGAAGAGAATGCAACCACAAAGCCTGGACCCGACTTCTTGAAGTCAAACAAACAGAGTACGAGTATAAGCAAGGTTGAGGTAGGTCCAGCGTTTAATGGTGTTGTGGAAGAATATTTTGTTGGCGGGGTTCGAATGAAGGTGAAGGTAGGAGATACTGAGATGAAGGGTGTTGCATTTTATCCCGTCCCTCCGCCAAATGTTGTTCCCCCTGGTATTAAGATGGTGACAAGAAAGGACCTTGCTATACCAGCCGTGCACTCTTCTTTACCTCATCGCTCAGCAAGAATTGCGACTCCAGTTTCTCTGGAGGGCTTTGTTTGGGTTCCAGACAATGAACAAGTTGCTACCTTTGCGAGTGGTATCGGCGGCTGCGACGACGACGGCGTTGGAGTAGTCAGGCGGAGGGATTCTCCTGCTGTCAAACTTTCTCCAAATTATCCAGAACCACCTGCTAACCCTACAGAGGATGCAGCAAATTTTGCTGAACAACCCAAGCTCATGAGTGCAGCTCTGGTTCAAGCTGCAAAGCAGTTTGATGCATTAGTTGCAGCACTGCCATTAGCCGACGGAGGTGAAGAAGCACAGCTCAAAAGGATTGCAGAACTGCAGGCTGAAAATGATACTGTTGGCCAAGAACTCCAGAGACAACTGGAAGCAGCAGAGGAGGAACTAAAGCAGGTCCTCGAATTGTTCAGCCAAGCTGCAGATAATTGCTTGAATTTGAAGAAACCAGATTACAAAATAAGGGAACTGATCTTCTCTCTGGAACTGGGTGGAGGGATTCCAGATCCTGTGGTTCCAGCCAATCTTCTCAAATTTCATGAGAGGGAAATAGAGAAAAGCTGGAGACGGCATGTCCAAGCATACAAAAATGCACCACACGCATACTATATATCCAGGGCACATTACCTGTGCGACCCAGTTGCATTACACCTCTCAGTATTGTTGATCAATTCACGCCTTCAAGCAGTTGAGAATCTACCAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009889 GO:0010468 GO:0010556 GO:0016592 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043076 GO:0043078 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0098542 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med21

Protein Analysis

353

Amino Acids

38.84

Weight (kDa)

6.24

Isoelectric Point (pI)

56.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med21	PF11221	171 - 259	4.2e-18	Subunit 21 of Mediator complex

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04780
fragaria_vesca	FvH4_3g18180 FvH4_3g18181 FvH4_4g21200
malus_domestica	MD10G1319700.v1.1
prunus_persica	Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.1G108500_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1 Prupe.4G022700_v2.0.a1
pyrus_communis	pycom10g27060 pycom16g12330
rosa_chinensis	RchiOBHm_Chr4g0426811 RchiOBHm_Chr5g0030661 RchiOBHm_Chr5g0030681
rosa_laevigata	RLG00000007276 RLG00000033237 RLG00000033242 RLG00000033244
rosa_multiflora	Rmu_sc0000953.1_g000011 Rmu_sc0004341.1_g000003 Rmu_sc0004963.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049620 Rroxscaffold_1G00049630 Rroxscaffold_1G00049640 Rroxscaffold_5G00368780
rosa_rugosa	Rorug04G0215000 Rorug05G0120100 Rorug05G0120100
rosa_samantha	Rh4AG270000 Rh4BG276300 Rh4CG291000 Rh4DG273500 Rh5AG211500 Rh5AG211700 Rh5BG210400 Rh5BG210600 Rh5CG234200 Rh5DG215500 Rh5DG215600 Rh5DG215800 Rh5DG215900
rosa_wichuraiana	Rw4G023430 Rw5G019370 Rw5G019410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	529
Acc36I	ACCTGC	2 cut(s)	529, 739
AciI	CCGC	5 cut(s)	31, 195, 263, 438, 472
AclWI	GGATC	1 cut(s)	854
AcoI	YGGCCR	1 cut(s)	700
AcsI	RAATTY	3 cut(s)	547, 790, 887
AfaI	GTAC	1 cut(s)	130
AfiI	CCNNNNNNNGG	1 cut(s)	535
AgsI	TTSAA	6 cut(s)	28, 112, 590, 790, 796, 1037
AhdI	GACNNNNNGTC	1 cut(s)	926
AjnI	CCWGG	4 cut(s)	13, 94, 280, 968
AjuI	GAANNNNNNNTTGG	2 cut(s)	174, 206
AluBI	AGCT	6 cut(s)	568, 581, 593, 658, 773, 915
AluI	AGCT	6 cut(s)	568, 581, 593, 658, 773, 915
Alw21I	GWGCWC	1 cut(s)	330
Alw26I	GTCTC	2 cut(s)	709, 913
Alw44I	GTGCAC	1 cut(s)	326
AlwI	GGATC	1 cut(s)	854
AlwNI	CAGNNNCTG	1 cut(s)	863
AoxI	GGCC	1 cut(s)	700
ApaLI	GTGCAC	1 cut(s)	326
ApeKI	GCWGC	7 cut(s)	441, 542, 578, 593, 620, 728, 773
ApoI	RAATTY	3 cut(s)	547, 790, 887
AspS9I	GGNCC	4 cut(s)	98, 155, 307, 751
AsuHPI	GGTGA	3 cut(s)	223, 307, 656
AsuII	TTCGAA	1 cut(s)	202
AvaII	GGWCC	4 cut(s)	98, 155, 307, 751
BaeGI	GKGCMC	2 cut(s)	330, 976
BalI	TGGCCA	1 cut(s)	702
Bbv12I	GWGCWC	1 cut(s)	330
BbvI	GCAGC	7 cut(s)	428, 554, 580, 590, 632, 740, 760
BccI	CCATC	1 cut(s)	286
BceAI	ACGGC	3 cut(s)	308, 469, 938
BcgI	CGANNNNNNTGC	2 cut(s)	977, 1011
BciT130I	CCWGG	4 cut(s)	15, 96, 282, 970
BclI	TGATCA	1 cut(s)	1020
BcoDI	GTCTC	2 cut(s)	709, 913
BfmI	CTRYAG	3 cut(s)	531, 677, 774
BfuAI	ACCTGC	2 cut(s)	529, 739
BisI	GCNGC	8 cut(s)	439, 442, 543, 579, 594, 621, 729, 774
BlpI	GCTNAGC	1 cut(s)	349
BlsI	GCNGC	8 cut(s)	440, 443, 544, 580, 595, 622, 730, 775
Bme1390I	CCNGG	4 cut(s)	15, 96, 282, 970
Bme18I	GGWCC	4 cut(s)	98, 155, 307, 751
BmeRI	GACNNNNNGTC	1 cut(s)	926
BmgT120I	GGNCC	4 cut(s)	98, 155, 307, 751
BmiI	GGNNCC	3 cut(s)	100, 396, 870
BmrFI	CCNGG	4 cut(s)	15, 96, 282, 970
BmrI	ACTGGG	2 cut(s)	851, 986
BmsI	GCATC	2 cut(s)	529, 598
BmuI	ACTGGG	2 cut(s)	851, 986
BplI	GAGNNNNNCTC	4 cut(s)	466, 498, 565, 597
BpmI	CTGGAG	4 cut(s)	351, 398, 695, 937
Bpu1102I	GCTNAGC	1 cut(s)	349
Bpu14I	TTCGAA	1 cut(s)	202
BsaJI	CCNNGG	2 cut(s)	280, 969
Bsc4I	CCNNNNNNNGG	1 cut(s)	535
Bse1I	ACTGG	4 cut(s)	368, 726, 846, 992
BseBI	CCWGG	4 cut(s)	15, 96, 282, 970
BseDI	CCNNGG	2 cut(s)	280, 969
BseGI	GGATG	1 cut(s)	544
BseLI	CCNNNNNNNGG	1 cut(s)	535
BseMII	CTCAG	3 cut(s)	219, 363, 1023
BseNI	ACTGG	4 cut(s)	368, 726, 846, 992
BseRI	GAGGAG	1 cut(s)	749
BseSI	GKGCMC	2 cut(s)	330, 976
BseXI	GCAGC	7 cut(s)	428, 554, 580, 590, 632, 740, 760
BsgI	GTGCAG	1 cut(s)	597
BshFI	GGCC	1 cut(s)	702
BsiHKAI	GWGCWC	1 cut(s)	330
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	1 cut(s)	535
BsmAI	GTCTC	2 cut(s)	709, 913
BsmBI	CGTCTC	1 cut(s)	913
BsmFI	GGGAC	1 cut(s)	242
BsmI	GAATGC	1 cut(s)	85
BsnI	GGCC	1 cut(s)	702
Bsp119I	TTCGAA	1 cut(s)	202
Bsp1286I	GDGCHC	2 cut(s)	330, 976
Bsp143I	GATC	3 cut(s)	825, 859, 1020
Bsp1720I	GCTNAGC	1 cut(s)	349
BspACI	CCGC	5 cut(s)	31, 195, 263, 438, 472
BspANI	GGCC	1 cut(s)	702
BspCNI	CTCAG	3 cut(s)	220, 362, 1022
BspHI	TCATGA	2 cut(s)	570, 892
BspLI	GGNNCC	3 cut(s)	100, 396, 870
BspMAI	CTGCAG	2 cut(s)	681, 778
BspMI	ACCTGC	2 cut(s)	529, 739
BspPI	GGATC	1 cut(s)	854
BspT104I	TTCGAA	1 cut(s)	202
BsrI	ACTGG	4 cut(s)	368, 726, 846, 992
BssECI	CCNNGG	2 cut(s)	280, 969
BssMI	GATC	3 cut(s)	825, 859, 1020
Bst2UI	CCWGG	4 cut(s)	15, 96, 282, 970
Bst4CI	ACNGT	1 cut(s)	697
Bst6I	CTCTTC	2 cut(s)	69, 337
BstAPI	GCANNNNNTGC	3 cut(s)	359, 551, 617
BstBI	TTCGAA	1 cut(s)	202
BstC8I	GCNNGC	1 cut(s)	681
BstDEI	CTNAG	3 cut(s)	228, 349, 1009
BstF5I	GGATG	1 cut(s)	544
BstKTI	GATC	3 cut(s)	828, 862, 1023
BstMAI	GTCTC	2 cut(s)	709, 913
BstMBI	GATC	3 cut(s)	825, 859, 1020
BstMWI	GCNNNNNNNGC	6 cut(s)	320, 359, 422, 551, 617, 953
BstNI	CCWGG	4 cut(s)	15, 96, 282, 970
BstNSI	RCATGY	1 cut(s)	929
BstSCI	CCNGG	4 cut(s)	13, 94, 280, 968
BstSFI	CTRYAG	3 cut(s)	531, 677, 774
BstSLI	GKGCMC	2 cut(s)	330, 976
BstV1I	GCAGC	7 cut(s)	428, 554, 580, 590, 632, 740, 760
BstX2I	RGATCY	1 cut(s)	859
BstYI	RGATCY	1 cut(s)	859
BsuRI	GGCC	1 cut(s)	702
BtgZI	GCGATG	1 cut(s)	329
BtsCI	GGATG	1 cut(s)	544
BtsI	GCAGTG	1 cut(s)	623
BtsIMutI	CAGTG	1 cut(s)	623
BveI	ACCTGC	2 cut(s)	529, 739
Cac8I	GCNNGC	1 cut(s)	681
CaiI	CAGNNNCTG	1 cut(s)	863
CciI	TCATGA	2 cut(s)	570, 892
Cfr13I	GGNCC	4 cut(s)	98, 155, 307, 751
CsiI	ACCWGGT	1 cut(s)	13
Csp6I	GTAC	1 cut(s)	129
CviAII	CATG	5 cut(s)	56, 71, 571, 893, 926
CviQI	GTAC	1 cut(s)	129
DdeI	CTNAG	3 cut(s)	228, 349, 1009
DpnI	GATC	3 cut(s)	827, 861, 1022
DpnII	GATC	3 cut(s)	825, 859, 1020
DriI	GACNNNNNGTC	1 cut(s)	926
EaeI	YGGCCR	1 cut(s)	700
Eam1104I	CTCTTC	2 cut(s)	69, 337
Eam1105I	GACNNNNNGTC	1 cut(s)	926
EarI	CTCTTC	2 cut(s)	69, 337
EciI	GGCGGA	2 cut(s)	252, 487
Eco47I	GGWCC	4 cut(s)	98, 155, 307, 751
EcoO109I	RGGNCCY	2 cut(s)	307, 751
EcoRII	CCWGG	4 cut(s)	13, 94, 280, 968
EcoT22I	ATGCAT	1 cut(s)	613
Esp3I	CGTCTC	1 cut(s)	913
FaeI	CATG	5 cut(s)	59, 74, 574, 896, 929
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	5 cut(s)	55, 70, 570, 892, 925
FauI	CCCGC	1 cut(s)	188
FbaI	TGATCA	1 cut(s)	1020
Fnu4HI	GCNGC	8 cut(s)	439, 442, 543, 579, 594, 621, 729, 774
FokI	GGATG	1 cut(s)	551
Fsp4HI	GCNGC	8 cut(s)	439, 442, 543, 579, 594, 621, 729, 774
GluI	GCNGC	8 cut(s)	439, 442, 543, 579, 594, 621, 729, 774
GsuI	CTGGAG	4 cut(s)	351, 398, 695, 937
HaeIII	GGCC	1 cut(s)	702
Hin1II	CATG	5 cut(s)	59, 74, 574, 896, 929
HinfI	GANTC	5 cut(s)	5, 364, 479, 853, 1048
HphI	GGTGA	3 cut(s)	223, 307, 656
Hpy166II	GTNNAC	2 cut(s)	41, 328
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	9 cut(s)	109, 377, 398, 512, 571, 712, 836, 857, 893
Hpy8I	GTNNAC	2 cut(s)	41, 328
Hpy99I	CGWCG	5 cut(s)	51, 449, 452, 455, 641
HpyAV	CCTTC	4 cut(s)	202, 208, 229, 1043
HpyCH4III	ACNGT	1 cut(s)	697
HpyCH4IV	ACGT	2 cut(s)	37, 49
HpyF10VI	GCNNNNNNNGC	6 cut(s)	320, 359, 422, 551, 617, 953
HpyF3I	CTNAG	3 cut(s)	228, 349, 1009
HpySE526I	ACGT	2 cut(s)	37, 49
Hsp92II	CATG	5 cut(s)	59, 74, 574, 896, 929
Ksp22I	TGATCA	1 cut(s)	1020
Kzo9I	GATC	3 cut(s)	825, 859, 1020
Lsp1109I	GCAGC	7 cut(s)	428, 554, 580, 590, 632, 740, 760
LweI	GCATC	2 cut(s)	529, 598
MabI	ACCWGGT	1 cut(s)	13
MaeII	ACGT	2 cut(s)	37, 49
MaeIII	GTNAC	1 cut(s)	295
MalI	GATC	3 cut(s)	827, 861, 1022
MboI	GATC	3 cut(s)	825, 859, 1020
MboII	GAAGA	7 cut(s)	86, 191, 324, 659, 808, 820, 872
MflI	RGATCY	1 cut(s)	859
MhlI	GDGCHC	2 cut(s)	330, 976
MlsI	TGGCCA	1 cut(s)	702
MluCI	AATT	8 cut(s)	357, 505, 547, 758, 781, 790, 887, 1024
MluNI	TGGCCA	1 cut(s)	702
MlyI	GAGTC	1 cut(s)	358
MmeI	TCCRAC	1 cut(s)	439
Mox20I	TGGCCA	1 cut(s)	702
Mph1103I	ATGCAT	1 cut(s)	613
MscI	TGGCCA	1 cut(s)	702
MseI	TTAA	2 cut(s)	165, 288
Msp20I	TGGCCA	1 cut(s)	702
MspR9I	CCNGG	4 cut(s)	15, 96, 282, 970
Mva1269I	GAATGC	1 cut(s)	85
MvaI	CCWGG	4 cut(s)	15, 96, 282, 970
MwoI	GCNNNNNNNGC	6 cut(s)	320, 359, 422, 551, 617, 953
NdeII	GATC	3 cut(s)	825, 859, 1020
NlaIII	CATG	5 cut(s)	59, 74, 574, 896, 929
NlaIV	GGNNCC	3 cut(s)	100, 396, 870
NmuCI	GTSAC	1 cut(s)	295
NsiI	ATGCAT	1 cut(s)	613
NspI	RCATGY	1 cut(s)	929
NspV	TTCGAA	1 cut(s)	202
PagI	TCATGA	2 cut(s)	570, 892
PaqCI	CACCTGC	1 cut(s)	529
PcsI	WCGNNNNNNNCGW	3 cut(s)	43, 441, 453
PctI	GAATGC	1 cut(s)	85
PfeI	GAWTC	4 cut(s)	5, 479, 853, 1048
PkrI	GCNGC	8 cut(s)	440, 443, 544, 580, 595, 622, 730, 775
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
PpuMI	RGGWCCY	2 cut(s)	307, 751
Psp5II	RGGWCCY	2 cut(s)	307, 751
Psp6I	CCWGG	4 cut(s)	13, 94, 280, 968
PspGI	CCWGG	4 cut(s)	13, 94, 280, 968
PspN4I	GGNNCC	3 cut(s)	100, 396, 870
PspPI	GGNCC	4 cut(s)	98, 155, 307, 751
PspPPI	RGGWCCY	2 cut(s)	307, 751
PstI	CTGCAG	2 cut(s)	681, 778
PstNI	CAGNNNCTG	1 cut(s)	863
PsuI	RGATCY	1 cut(s)	859
RsaI	GTAC	1 cut(s)	130
RsaNI	GTAC	1 cut(s)	129
SaqAI	TTAA	2 cut(s)	165, 288
SatI	GCNGC	8 cut(s)	439, 442, 543, 579, 594, 621, 729, 774
Sau3AI	GATC	3 cut(s)	825, 859, 1020
Sau96I	GGNCC	4 cut(s)	98, 155, 307, 751
SchI	GAGTC	1 cut(s)	358
ScrFI	CCNGG	4 cut(s)	15, 96, 282, 970
SduI	GDGCHC	2 cut(s)	330, 976
SexAI	ACCWGGT	1 cut(s)	13
SfaNI	GCATC	2 cut(s)	529, 598
SfcI	CTRYAG	3 cut(s)	531, 677, 774
SfuI	TTCGAA	1 cut(s)	202
SinI	GGWCC	4 cut(s)	98, 155, 307, 751
Sse9I	AATT	8 cut(s)	357, 505, 547, 758, 781, 790, 887, 1024
SsiI	CCGC	5 cut(s)	31, 195, 263, 438, 472
SspI	AATATT	1 cut(s)	185
StyD4I	CCNGG	4 cut(s)	13, 94, 280, 968
TaaI	ACNGT	1 cut(s)	697
TaiI	ACGT	2 cut(s)	40, 52
TaqI	TCGA	3 cut(s)	46, 202, 756
TasI	AATT	8 cut(s)	357, 505, 547, 758, 781, 790, 887, 1024
TauI	GCSGC	1 cut(s)	441
TfiI	GAWTC	4 cut(s)	5, 479, 853, 1048
Tru1I	TTAA	2 cut(s)	165, 288
Tru9I	TTAA	2 cut(s)	165, 288
TscAI	CASTG	1 cut(s)	630
TseFI	GTSAC	1 cut(s)	295
TseI	GCWGC	7 cut(s)	441, 542, 578, 593, 620, 728, 773
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	5 cut(s)	87, 221, 248, 420, 881
TspGWI	ACGGA	1 cut(s)	654
TspRI	CASTG	1 cut(s)	630
VneI	GTGCAC	1 cut(s)	326
VpaK11BI	GGWCC	4 cut(s)	98, 155, 307, 751
XapI	RAATTY	3 cut(s)	547, 790, 887
XceI	RCATGY	1 cut(s)	929
Zsp2I	ATGCAT	1 cut(s)	613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.