Rh5DG215900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001458
Physical Location & Seq
Reverse (-)
24361873 .. 24375287
13415 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG215900.1

Sequence Viewer

Length: 264 bp
ATGAGTTTGAGAGAAGTTTCCAGGCCGCCCTTGTTCAAGGAGACGTGGACAGCTCCATATCGAAAGACAGTGAAGGTAGGAGAGACTGAGATGAAGGGTGTTGCATTTTATCCCTTCCCTCTGCCAAATGTTGTTCCCCCTGATATTAAGACGGTGACAAGAAAGGACCTTGCTATACTAGCCGTGCATTCTATTCTTTCTCGCTCAGCACAAAGTAATAGGCAACGTGCTGAGGTGAAAAAGGAAAAACCTGCAGATTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.84

Weight (kDa)

10.07

Isoelectric Point (pI)

51.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 259
AciI CCGC 1 cut(s) 26
AgsI TTSAA 1 cut(s) 37
AjiI CACGTC 1 cut(s) 45
AjnI CCWGG 1 cut(s) 20
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw26I GTCTC 2 cut(s) 35, 77
AoxI GGCC 1 cut(s) 23
AspS9I GGNCC 1 cut(s) 166
AsuHPI GGTGA 2 cut(s) 166, 247
AvaII GGWCC 1 cut(s) 166
BbvCI CCTCAGC 1 cut(s) 231
BceAI ACGGC 1 cut(s) 167
BciT130I CCWGG 1 cut(s) 22
BcoDI GTCTC 2 cut(s) 35, 77
BfaI CTAG 1 cut(s) 179
BfmI CTRYAG 1 cut(s) 252
BfuAI ACCTGC 1 cut(s) 259
BisI GCNGC 1 cut(s) 26
BlpI GCTNAGC 1 cut(s) 205
BlsI GCNGC 1 cut(s) 27
Bme1390I CCNGG 1 cut(s) 22
Bme18I GGWCC 1 cut(s) 166
BmgBI CACGTC 1 cut(s) 45
BmgT120I GGNCC 1 cut(s) 166
BmrFI CCNGG 1 cut(s) 22
Bpu10I CCTNAGC 1 cut(s) 231
Bpu1102I GCTNAGC 1 cut(s) 205
BseBI CCWGG 1 cut(s) 22
BseMII CTCAG 3 cut(s) 78, 219, 222
BshFI GGCC 1 cut(s) 25
BsmAI GTCTC 2 cut(s) 35, 77
BsmBI CGTCTC 1 cut(s) 35
BsmI GAATGC 1 cut(s) 187
BsnI GGCC 1 cut(s) 25
Bsp1720I GCTNAGC 1 cut(s) 205
BspACI CCGC 1 cut(s) 26
BspANI GGCC 1 cut(s) 25
BspCNI CTCAG 3 cut(s) 79, 218, 223
BspMAI CTGCAG 1 cut(s) 256
BspMI ACCTGC 1 cut(s) 259
Bst2UI CCWGG 1 cut(s) 22
Bst4CI ACNGT 2 cut(s) 70, 154
BstDEI CTNAG 4 cut(s) 87, 205, 231, 261
BstMAI GTCTC 2 cut(s) 35, 77
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstNI CCWGG 1 cut(s) 22
BstSCI CCNGG 1 cut(s) 20
BstSFI CTRYAG 1 cut(s) 252
BsuRI GGCC 1 cut(s) 25
BtrI CACGTC 1 cut(s) 45
BtsIMutI CAGTG 1 cut(s) 75
BveI ACCTGC 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 166
CviJI RGCY 3 cut(s) 25, 53, 182
CviKI_1 RGCY 3 cut(s) 25, 53, 182
DdeI CTNAG 4 cut(s) 87, 205, 231, 261
Eco47I GGWCC 1 cut(s) 166
EcoO109I RGGNCCY 1 cut(s) 166
EcoRII CCWGG 1 cut(s) 20
Esp3I CGTCTC 1 cut(s) 35
FaiI YATR 2 cut(s) 58, 176
Fnu4HI GCNGC 1 cut(s) 26
Fsp4HI GCNGC 1 cut(s) 26
FspBI CTAG 1 cut(s) 179
GluI GCNGC 1 cut(s) 26
HaeIII GGCC 1 cut(s) 25
HinfI GANTC 1 cut(s) 257
HphI GGTGA 2 cut(s) 166, 247
Hpy166II GTNNAC 1 cut(s) 48
Hpy8I GTNNAC 1 cut(s) 48
HpyAV CCTTC 3 cut(s) 67, 88, 124
HpyCH4III ACNGT 2 cut(s) 70, 154
HpyCH4IV ACGT 2 cut(s) 44, 226
HpyCH4V TGCA 3 cut(s) 104, 187, 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 4 cut(s) 87, 205, 231, 261
HpySE526I ACGT 2 cut(s) 44, 226
LmnI GCTCC 1 cut(s) 58
LpnPI CCDG 3 cut(s) 7, 34, 153
MaeI CTAG 1 cut(s) 179
MaeII ACGT 2 cut(s) 44, 226
MaeIII GTNAC 1 cut(s) 154
MnlI CCTC 2 cut(s) 129, 226
MseI TTAA 1 cut(s) 147
MspR9I CCNGG 1 cut(s) 22
Mva1269I GAATGC 1 cut(s) 187
MvaI CCWGG 1 cut(s) 22
MwoI GCNNNNNNNGC 1 cut(s) 179
NmuCI GTSAC 1 cut(s) 154
PctI GAATGC 1 cut(s) 187
PfeI GAWTC 1 cut(s) 257
PkrI GCNGC 1 cut(s) 27
PpuMI RGGWCCY 1 cut(s) 166
Psp5II RGGWCCY 1 cut(s) 166
Psp6I CCWGG 1 cut(s) 20
PspGI CCWGG 1 cut(s) 20
PspPI GGNCC 1 cut(s) 166
PspPPI RGGWCCY 1 cut(s) 166
PstI CTGCAG 1 cut(s) 256
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 1 cut(s) 26
Sau96I GGNCC 1 cut(s) 166
ScrFI CCNGG 1 cut(s) 22
SetI ASST 7 cut(s) 47, 55, 78, 171, 229, 237, 253
SfcI CTRYAG 1 cut(s) 252
SinI GGWCC 1 cut(s) 166
SsiI CCGC 1 cut(s) 26
SspMI CTAG 1 cut(s) 179
StyD4I CCNGG 1 cut(s) 20
TaaI ACNGT 2 cut(s) 70, 154
TaiI ACGT 2 cut(s) 47, 229
TaqI TCGA 1 cut(s) 61
TauI GCSGC 1 cut(s) 28
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TscAI CASTG 1 cut(s) 75
TseFI GTSAC 1 cut(s) 154
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 1 cut(s) 107
TspRI CASTG 1 cut(s) 75
VpaK11BI GGWCC 1 cut(s) 166
XspI CTAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.