mediator of RNA polymerase II transcription subunit
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| LRR_4 | PF12799 | 342 - 378 | 1.3e-06 | Leucine Rich repeats (2 copies) |
| IG_AIR9 | PF23197 | 497 - 585 | 1.5e-09 | AIR9 A9 domain |
| IG_AIR9 | PF23197 | 598 - 682 | 4.9e-20 | AIR9 A9 domain |
| IG_AIR9 | PF23197 | 694 - 780 | 1.3e-33 | AIR9 A9 domain |
| IG_AIR9 | PF23197 | 790 - 881 | 5.4e-14 | AIR9 A9 domain |
| IG_AIR9 | PF23197 | 892 - 978 | 6.5e-23 | AIR9 A9 domain |
| IG_AIR9 | PF23197 | 992 - 1071 | 1e-20 | AIR9 A9 domain |
| IG_AIR9 | PF23197 | 1086 - 1168 | 1.2e-24 | AIR9 A9 domain |
| IG_AIR9 | PF23197 | 1183 - 1271 | 3e-16 | AIR9 A9 domain |
| IG_AIR9 | PF23197 | 1296 - 1364 | 1.1e-16 | AIR9 A9 domain |
| IG_AIR9 | PF23197 | 1486 - 1571 | 6.2e-20 | AIR9 A9 domain |
| PH_AIR9 | PF23218 | 1601 - 1697 | 4.5e-52 | AIR9 PH-like domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 1838, 2046, 4889 |
| AatII | GACGTC | 1 cut(s) | 4353 |
| Acc16I | TGCGCA | 1 cut(s) | 3467 |
| Acc36I | ACCTGC | 2 cut(s) | 1147, 4318 |
| AccB1I | GGYRCC | 3 cut(s) | 2024, 3772, 5040 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1778, 3265 |
| AccI | GTMKAC | 6 cut(s) | 514, 1662, 2003, 2243, 5001, 5019 |
| AccII | CGCG | 1 cut(s) | 3199 |
| AccIII | TCCGGA | 2 cut(s) | 2801, 3072 |
| AciI | CCGC | 4 cut(s) | 376, 3039, 3524, 4832 |
| AclI | AACGTT | 2 cut(s) | 1433, 2091 |
| AcyI | GRCGYC | 1 cut(s) | 4350 |
| AflIII | ACRYGT | 1 cut(s) | 2944 |
| AgeI | ACCGGT | 1 cut(s) | 1213 |
| AhlI | ACTAGT | 1 cut(s) | 3808 |
| AjiI | CACGTC | 1 cut(s) | 1059 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 176, 208, 1079, 1111, 4895, 4927 |
| Alw21I | GWGCWC | 1 cut(s) | 2525 |
| Alw26I | GTCTC | 9 cut(s) | 313, 384, 507, 515, 637, 857, 2651, 3885, 4126 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 89, 368, 1778 |
| Ama87I | CYCGRG | 4 cut(s) | 205, 386, 1332, 4598 |
| Aor13HI | TCCGGA | 2 cut(s) | 2801, 3072 |
| ApaI | GGGCCC | 1 cut(s) | 2168 |
| ApeKI | GCWGC | 4 cut(s) | 89, 1166, 1274, 1421 |
| AseI | ATTAAT | 2 cut(s) | 1583, 3984 |
| AsiGI | ACCGGT | 1 cut(s) | 1213 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1621, 2946, 3579 |
| AspLEI | GCGC | 3 cut(s) | 3199, 3468, 4359 |
| AsuC2I | CCSGG | 6 cut(s) | 463, 691, 764, 1476, 4599, 4600 |
| AvaI | CYCGRG | 4 cut(s) | 205, 386, 1332, 4598 |
| AvaII | GGWCC | 7 cut(s) | 475, 826, 1295, 3203, 3230, 3245, 4430 |
| AxyI | CCTNAGG | 2 cut(s) | 830, 2817 |
| BaeGI | GKGCMC | 3 cut(s) | 1874, 2168, 3777 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 2453, 2486, 2637, 2670 |
| BamHI | GGATCC | 1 cut(s) | 3526 |
| BanI | GGYRCC | 3 cut(s) | 2024, 3772, 5040 |
| BanII | GRGCYC | 1 cut(s) | 2168 |
| BbsI | GAAGAC | 1 cut(s) | 693 |
| Bbv12I | GWGCWC | 1 cut(s) | 2525 |
| BbvCI | CCTCAGC | 1 cut(s) | 1077 |
| BbvI | GCAGC | 4 cut(s) | 76, 1153, 1286, 1433 |
| BceAI | ACGGC | 3 cut(s) | 286, 1392, 4020 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2061, 2095 |
| BclI | TGATCA | 2 cut(s) | 1504, 5067 |
| BcnI | CCSGG | 6 cut(s) | 463, 691, 764, 1476, 4599, 4600 |
| BcoDI | GTCTC | 9 cut(s) | 313, 384, 507, 515, 637, 857, 2651, 3885, 4126 |
| BcuI | ACTAGT | 1 cut(s) | 3808 |
| BfmI | CTRYAG | 3 cut(s) | 360, 666, 1154 |
| BfoI | RGCGCY | 1 cut(s) | 4360 |
| BfuAI | ACCTGC | 2 cut(s) | 1147, 4318 |
| BglII | AGATCT | 2 cut(s) | 1324, 2107 |
| BisI | GCNGC | 4 cut(s) | 90, 1167, 1275, 1422 |
| BlpI | GCTNAGC | 2 cut(s) | 4314, 4407 |
| BlsI | GCNGC | 4 cut(s) | 91, 1168, 1276, 1423 |
| BmcAI | AGTACT | 3 cut(s) | 1561, 3079, 3397 |
| Bme18I | GGWCC | 7 cut(s) | 475, 826, 1295, 3203, 3230, 3245, 4430 |
| BmeT110I | CYCGRG | 4 cut(s) | 205, 386, 1332, 4598 |
| BmgBI | CACGTC | 1 cut(s) | 1059 |
| BmrI | ACTGGG | 4 cut(s) | 29, 240, 2885, 3202 |
| BmuI | ACTGGG | 4 cut(s) | 29, 240, 2885, 3202 |
| BoxI | GACNNNNGTC | 1 cut(s) | 480 |
| BpiI | GAAGAC | 1 cut(s) | 693 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1085, 1117, 4198, 4230 |
| BpmI | CTGGAG | 9 cut(s) | 1674, 1860, 1959, 2457, 2589, 2715, 3345, 3560, 4487 |
| Bpu10I | CCTNAGC | 3 cut(s) | 392, 1077, 1671 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 4314, 4407 |
| BpuEI | CTTGAG | 6 cut(s) | 741, 839, 1241, 3322, 4865, 5102 |
| BpuMI | CCSGG | 6 cut(s) | 463, 691, 764, 1476, 4599, 4600 |
| BsaAI | YACGTR | 1 cut(s) | 4511 |
| BsaHI | GRCGYC | 1 cut(s) | 4350 |
| BsaI | GGTCTC | 2 cut(s) | 384, 507 |
| BsaJI | CCNNGG | 7 cut(s) | 119, 144, 1788, 2538, 2953, 4598, 4599 |
| BsaWI | WCCGGW | 5 cut(s) | 477, 1213, 2801, 3072, 3829 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 1806, 1836, 1946, 1976, 2097, 2127, 2650, 2680 |
| Bse118I | RCCGGY | 1 cut(s) | 1213 |
| Bse21I | CCTNAGG | 2 cut(s) | 830, 2817 |
| Bse3DI | GCAATG | 3 cut(s) | 337, 1460, 3665 |
| BseAI | TCCGGA | 2 cut(s) | 2801, 3072 |
| BseDI | CCNNGG | 7 cut(s) | 119, 144, 1788, 2538, 2953, 4598, 4599 |
| BseMI | GCAATG | 3 cut(s) | 337, 1460, 3665 |
| BseRI | GAGGAG | 5 cut(s) | 1253, 1918, 1967, 2148, 3623 |
| BseSI | GKGCMC | 3 cut(s) | 1874, 2168, 3777 |
| BseXI | GCAGC | 4 cut(s) | 76, 1153, 1286, 1433 |
| BseYI | CCCAGC | 2 cut(s) | 2168, 2626 |
| BsgI | GTGCAG | 2 cut(s) | 1350, 5051 |
| Bsh1236I | CGCG | 1 cut(s) | 3199 |
| BshNI | GGYRCC | 3 cut(s) | 2024, 3772, 5040 |
| BshTI | ACCGGT | 1 cut(s) | 1213 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2525 |
| BsiHKCI | CYCGRG | 4 cut(s) | 205, 386, 1332, 4598 |
| BslFI | GGGAC | 4 cut(s) | 30, 247, 3231, 3490 |
| BsmAI | GTCTC | 9 cut(s) | 313, 384, 507, 515, 637, 857, 2651, 3885, 4126 |
| BsmFI | GGGAC | 4 cut(s) | 30, 247, 3231, 3490 |
| BsmI | GAATGC | 1 cut(s) | 1638 |
| Bso31I | GGTCTC | 2 cut(s) | 384, 507 |
| BsoBI | CYCGRG | 4 cut(s) | 205, 386, 1332, 4598 |
| Bsp120I | GGGCCC | 1 cut(s) | 2164 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1874, 2168, 2525, 3777 |
| Bsp13I | TCCGGA | 2 cut(s) | 2801, 3072 |
| Bsp1407I | TGTACA | 1 cut(s) | 1549 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 4314, 4407 |
| BspACI | CCGC | 4 cut(s) | 376, 3039, 3524, 4832 |
| BspEI | TCCGGA | 2 cut(s) | 2801, 3072 |
| BspFNI | CGCG | 1 cut(s) | 3199 |
| BspHI | TCATGA | 2 cut(s) | 2749, 2782 |
| BspMAI | CTGCAG | 2 cut(s) | 364, 1158 |
| BspMI | ACCTGC | 2 cut(s) | 1147, 4318 |
| BspQI | GCTCTTC | 1 cut(s) | 3849 |
| BspT107I | GGYRCC | 3 cut(s) | 2024, 3772, 5040 |
| BspTNI | GGTCTC | 2 cut(s) | 384, 507 |
| BsrDI | GCAATG | 3 cut(s) | 337, 1460, 3665 |
| BsrFI | RCCGGY | 1 cut(s) | 1213 |
| BsrGI | TGTACA | 1 cut(s) | 1549 |
| BssAI | RCCGGY | 1 cut(s) | 1213 |
| BssECI | CCNNGG | 7 cut(s) | 119, 144, 1788, 2538, 2953, 4598, 4599 |
| BssNAI | GTATAC | 3 cut(s) | 1663, 2004, 2244 |
| BssNI | GRCGYC | 1 cut(s) | 4350 |
| BssT1I | CCWWGG | 2 cut(s) | 1788, 2538 |
| Bst1107I | GTATAC | 3 cut(s) | 1663, 2004, 2244 |
| Bst6I | CTCTTC | 4 cut(s) | 2152, 3039, 3849, 5118 |
| BstACI | GRCGYC | 1 cut(s) | 4350 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1856, 3119, 3812 |
| BstAUI | TGTACA | 1 cut(s) | 1549 |
| BstBAI | YACGTR | 1 cut(s) | 4511 |
| BstEII | GGTNACC | 3 cut(s) | 465, 2621, 4695 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1487 |
| BstFNI | CGCG | 1 cut(s) | 3199 |
| BstH2I | RGCGCY | 1 cut(s) | 4360 |
| BstHHI | GCGC | 3 cut(s) | 3199, 3468, 4359 |
| BstMAI | GTCTC | 9 cut(s) | 313, 384, 507, 515, 637, 857, 2651, 3885, 4126 |
| BstNSI | RCATGY | 3 cut(s) | 1421, 3133, 3258 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 480 |
| BstPI | GGTNACC | 3 cut(s) | 465, 2621, 4695 |
| BstSFI | CTRYAG | 3 cut(s) | 360, 666, 1154 |
| BstSLI | GKGCMC | 3 cut(s) | 1874, 2168, 3777 |
| BstUI | CGCG | 1 cut(s) | 3199 |
| BstV1I | GCAGC | 4 cut(s) | 76, 1153, 1286, 1433 |
| BstV2I | GAAGAC | 1 cut(s) | 693 |
| BstX2I | RGATCY | 6 cut(s) | 686, 1324, 2107, 2804, 3526, 3659 |
| BstYI | RGATCY | 6 cut(s) | 686, 1324, 2107, 2804, 3526, 3659 |
| BstZ17I | GTATAC | 3 cut(s) | 1663, 2004, 2244 |
| Bsu36I | CCTNAGG | 2 cut(s) | 830, 2817 |
| BtgZI | GCGATG | 1 cut(s) | 2255 |
| BtrI | CACGTC | 1 cut(s) | 1059 |
| BtsI | GCAGTG | 2 cut(s) | 312, 4284 |
| BveI | ACCTGC | 2 cut(s) | 1147, 4318 |
| CaiI | CAGNNNCTG | 3 cut(s) | 89, 368, 1778 |
| CciI | TCATGA | 2 cut(s) | 2749, 2782 |
| CfoI | GCGC | 3 cut(s) | 3199, 3468, 4359 |
| Cfr10I | RCCGGY | 1 cut(s) | 1213 |
| Cfr9I | CCCGGG | 1 cut(s) | 4598 |
| CseI | GACGC | 1 cut(s) | 744 |
| CsiI | ACCWGGT | 2 cut(s) | 1771, 3241 |
| CspAI | ACCGGT | 1 cut(s) | 1213 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 325, 360, 844, 879, 2410, 2445 |
| DraI | TTTAAA | 1 cut(s) | 2473 |
| Eam1104I | CTCTTC | 4 cut(s) | 2152, 3039, 3849, 5118 |
| EarI | CTCTTC | 4 cut(s) | 2152, 3039, 3849, 5118 |
| Eco130I | CCWWGG | 2 cut(s) | 1788, 2538 |
| Eco147I | AGGCCT | 2 cut(s) | 68, 143 |
| Eco24I | GRGCYC | 1 cut(s) | 2168 |
| Eco31I | GGTCTC | 2 cut(s) | 384, 507 |
| Eco32I | GATATC | 1 cut(s) | 4256 |
| Eco47I | GGWCC | 7 cut(s) | 475, 826, 1295, 3203, 3230, 3245, 4430 |
| Eco81I | CCTNAGG | 2 cut(s) | 830, 2817 |
| Eco88I | CYCGRG | 4 cut(s) | 205, 386, 1332, 4598 |
| Eco91I | GGTNACC | 3 cut(s) | 465, 2621, 4695 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1487 |
| EcoO109I | RGGNCCY | 3 cut(s) | 989, 2164, 2165 |
| EcoO65I | GGTNACC | 3 cut(s) | 465, 2621, 4695 |
| EcoRI | GAATTC | 3 cut(s) | 250, 1782, 4446 |
| EcoRV | GATATC | 1 cut(s) | 4256 |
| EcoT14I | CCWWGG | 2 cut(s) | 1788, 2538 |
| EcoT22I | ATGCAT | 1 cut(s) | 1385 |
| EcoT38I | GRGCYC | 1 cut(s) | 2168 |
| ErhI | CCWWGG | 2 cut(s) | 1788, 2538 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1451, 1483, 1606, 1638 |
| FaqI | GGGAC | 4 cut(s) | 30, 247, 3231, 3490 |
| FauNDI | CATATG | 3 cut(s) | 2632, 2731, 4417 |
| FbaI | TGATCA | 2 cut(s) | 1504, 5067 |
| FblI | GTMKAC | 6 cut(s) | 514, 1662, 2003, 2243, 5001, 5019 |
| Fnu4HI | GCNGC | 4 cut(s) | 90, 1167, 1275, 1422 |
| FriOI | GRGCYC | 1 cut(s) | 2168 |
| Fsp4HI | GCNGC | 4 cut(s) | 90, 1167, 1275, 1422 |
| FspI | TGCGCA | 1 cut(s) | 3467 |
| GlaI | GCGC | 3 cut(s) | 3198, 3467, 4358 |
| GluI | GCNGC | 4 cut(s) | 90, 1167, 1275, 1422 |
| GsaI | CCCAGC | 2 cut(s) | 2172, 2630 |
| GsuI | CTGGAG | 9 cut(s) | 1674, 1860, 1959, 2457, 2589, 2715, 3345, 3560, 4487 |
| HaeII | RGCGCY | 1 cut(s) | 4360 |
| HgaI | GACGC | 1 cut(s) | 744 |
| HhaI | GCGC | 3 cut(s) | 3199, 3468, 4359 |
| Hin1I | GRCGYC | 1 cut(s) | 4350 |
| Hin6I | GCGC | 3 cut(s) | 3197, 3466, 4357 |
| HinP1I | GCGC | 3 cut(s) | 3197, 3466, 4357 |
| HincII | GTYRAC | 4 cut(s) | 1145, 1965, 3022, 5002 |
| HindII | GTYRAC | 4 cut(s) | 1145, 1965, 3022, 5002 |
| HindIII | AAGCTT | 3 cut(s) | 638, 3650, 4763 |
| Hpy99I | CGWCG | 3 cut(s) | 1063, 2083, 4355 |
| HpyCH4IV | ACGT | 8 cut(s) | 923, 1058, 1433, 2091, 2927, 2944, 4350, 4510 |
| HpySE526I | ACGT | 8 cut(s) | 923, 1058, 1433, 2091, 2927, 2944, 4350, 4510 |
| Hsp92I | GRCGYC | 1 cut(s) | 4350 |
| HspAI | GCGC | 3 cut(s) | 3197, 3466, 4357 |
| Kpn2I | TCCGGA | 2 cut(s) | 2801, 3072 |
| Ksp22I | TGATCA | 2 cut(s) | 1504, 5067 |
| LguI | GCTCTTC | 1 cut(s) | 3849 |
| LmnI | GCTCC | 7 cut(s) | 1086, 1940, 2561, 3541, 3933, 4331, 4960 |
| Lsp1109I | GCAGC | 4 cut(s) | 76, 1153, 1286, 1433 |
| MabI | ACCWGGT | 2 cut(s) | 1771, 3241 |
| MaeII | ACGT | 8 cut(s) | 923, 1058, 1433, 2091, 2927, 2944, 4350, 4510 |
| MfeI | CAATTG | 4 cut(s) | 342, 1347, 2859, 3138 |
| MflI | RGATCY | 6 cut(s) | 686, 1324, 2107, 2804, 3526, 3659 |
| MhlI | GDGCHC | 4 cut(s) | 1874, 2168, 2525, 3777 |
| MmeI | TCCRAC | 5 cut(s) | 804, 906, 2083, 3119, 3598 |
| Mph1103I | ATGCAT | 1 cut(s) | 1385 |
| MroI | TCCGGA | 2 cut(s) | 2801, 3072 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1621, 2946, 3579 |
| MseI | TTAA | 7 cut(s) | 1304, 1583, 1589, 2372, 2472, 3984, 4746 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1378, 2597, 2881, 3461 |
| MspA1I | CMGCKG | 1 cut(s) | 4406 |
| MunI | CAATTG | 4 cut(s) | 342, 1347, 2859, 3138 |
| Mva1269I | GAATGC | 1 cut(s) | 1638 |
| MvnI | CGCG | 1 cut(s) | 3199 |
| NciI | CCSGG | 6 cut(s) | 463, 691, 764, 1476, 4599, 4600 |
| NdeI | CATATG | 3 cut(s) | 2632, 2731, 4417 |
| NsbI | TGCGCA | 1 cut(s) | 3467 |
| NsiI | ATGCAT | 1 cut(s) | 1385 |
| NspI | RCATGY | 3 cut(s) | 1421, 3133, 3258 |
| PaeI | GCATGC | 1 cut(s) | 1421 |
| PaeR7I | CTCGAG | 1 cut(s) | 205 |
| PagI | TCATGA | 2 cut(s) | 2749, 2782 |
| PceI | AGGCCT | 2 cut(s) | 68, 143 |
| PciSI | GCTCTTC | 1 cut(s) | 3849 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 212, 2097 |
| PctI | GAATGC | 1 cut(s) | 1638 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1621, 2946, 3579 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1778, 3265 |
| PinAI | ACCGGT | 1 cut(s) | 1213 |
| PkrI | GCNGC | 4 cut(s) | 91, 1168, 1276, 1423 |
| Ppu21I | YACGTR | 1 cut(s) | 4511 |
| PshAI | GACNNNNGTC | 1 cut(s) | 480 |
| PshBI | ATTAAT | 2 cut(s) | 1583, 3984 |
| PsiI | TTATAA | 3 cut(s) | 1838, 2046, 4889 |
| Psp1406I | AACGTT | 2 cut(s) | 1433, 2091 |
| PspEI | GGTNACC | 3 cut(s) | 465, 2621, 4695 |
| PspFI | CCCAGC | 2 cut(s) | 2168, 2626 |
| PspOMI | GGGCCC | 1 cut(s) | 2164 |
| PspXI | VCTCGAGB | 1 cut(s) | 205 |
| PstI | CTGCAG | 2 cut(s) | 364, 1158 |
| PstNI | CAGNNNCTG | 3 cut(s) | 89, 368, 1778 |
| PsuI | RGATCY | 6 cut(s) | 686, 1324, 2107, 2804, 3526, 3659 |
| PvuII | CAGCTG | 1 cut(s) | 4406 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1378, 2597, 2881, 3461 |
| SalI | GTCGAC | 1 cut(s) | 5000 |
| SapI | GCTCTTC | 1 cut(s) | 3849 |
| SaqAI | TTAA | 7 cut(s) | 1304, 1583, 1589, 2372, 2472, 3984, 4746 |
| SatI | GCNGC | 4 cut(s) | 90, 1167, 1275, 1422 |
| ScaI | AGTACT | 3 cut(s) | 1561, 3079, 3397 |
| SduI | GDGCHC | 4 cut(s) | 1874, 2168, 2525, 3777 |
| SexAI | ACCWGGT | 2 cut(s) | 1771, 3241 |
| SfcI | CTRYAG | 3 cut(s) | 360, 666, 1154 |
| Sfr274I | CTCGAG | 1 cut(s) | 205 |
| SinI | GGWCC | 7 cut(s) | 475, 826, 1295, 3203, 3230, 3245, 4430 |
| SlaI | CTCGAG | 1 cut(s) | 205 |
| SmaI | CCCGGG | 1 cut(s) | 4600 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1378, 2597, 2881, 3461 |
| SmlI | CTYRAG | 7 cut(s) | 205, 756, 854, 1220, 3301, 4844, 5117 |
| SmoI | CTYRAG | 7 cut(s) | 205, 756, 854, 1220, 3301, 4844, 5117 |
| SpeI | ACTAGT | 1 cut(s) | 3808 |
| SphI | GCATGC | 1 cut(s) | 1421 |
| SseBI | AGGCCT | 2 cut(s) | 68, 143 |
| SsiI | CCGC | 4 cut(s) | 376, 3039, 3524, 4832 |
| SspI | AATATT | 4 cut(s) | 1719, 1834, 2718, 3032 |
| StuI | AGGCCT | 2 cut(s) | 68, 143 |
| StyI | CCWWGG | 2 cut(s) | 1788, 2538 |
| TaiI | ACGT | 8 cut(s) | 926, 1061, 1436, 2094, 2930, 2947, 4353, 4513 |
| TaqI | TCGA | 9 cut(s) | 137, 206, 658, 795, 4000, 4167, 4473, 4731, 5001 |
| TaqII | GACCGA | 2 cut(s) | 529, 2071 |
| TatI | WGTACW | 7 cut(s) | 1549, 1559, 1709, 3077, 3395, 4236, 5096 |
| Tru1I | TTAA | 7 cut(s) | 1304, 1583, 1589, 2372, 2472, 3984, 4746 |
| Tru9I | TTAA | 7 cut(s) | 1304, 1583, 1589, 2372, 2472, 3984, 4746 |
| TseI | GCWGC | 4 cut(s) | 89, 1166, 1274, 1421 |
| TspGWI | ACGGA | 5 cut(s) | 61, 547, 2067, 3113, 4938 |
| TspMI | CCCGGG | 1 cut(s) | 4598 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1778, 3265 |
| VpaK11BI | GGWCC | 7 cut(s) | 475, 826, 1295, 3203, 3230, 3245, 4430 |
| VspI | ATTAAT | 2 cut(s) | 1583, 3984 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1487 |
| XbaI | TCTAGA | 1 cut(s) | 3409 |
| XceI | RCATGY | 3 cut(s) | 1421, 3133, 3258 |
| XhoI | CTCGAG | 1 cut(s) | 205 |
| XmaI | CCCGGG | 1 cut(s) | 4598 |
| XmiI | GTMKAC | 6 cut(s) | 514, 1662, 2003, 2243, 5001, 5019 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1621, 2946, 3579 |
| ZraI | GACGTC | 1 cut(s) | 4351 |
| ZrmI | AGTACT | 3 cut(s) | 1561, 3079, 3397 |
| Zsp2I | ATGCAT | 1 cut(s) | 1385 |