Rmu_co8444909.1_g000001

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8444909.1
OG0000292
Physical Location & Seq
Reverse (-)
108 .. 1109
1002 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8444909.1_g000001.1.cds

Sequence Viewer

Length: 531 bp
atggcacctgaatatgcaatgcggggttatctaactgataaagcagatgtttatagtttcggaattcttgtattggaaatggtcagtggaaggtgcaatacaacttaccgctcaaaggaagaatgcttttatcttctagattgggcacttcttctaaaagagagagcaagcttgttggacctggtggatccaaggttgggctcagagttcaacaaagaagagatgatttctacgatcaatattgctctcctttgttctaatgcttcttcagcagttaggcccgccatgtcttcagtggtgagcatgcttgaaggtaaggcttctgttccggaggtggtctttgatccaaacgcttcaattaatgaaatcaatgagatgaggaaacattttcaatccattattgaagaaaacaatggtgaccctgagagtggtggacgaactatgtcaattgaagggtggtggactgcttcatctacatctgctcaagacctctacccagtccgccctgattcatgttattgggagaattaa

Protein Analysis

176

Amino Acids

19.71

Weight (kDa)

4.53

Isoelectric Point (pI)

53.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000292)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53420 AT3G14840
fragaria_vesca FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17851
malus_domestica MD03G1246600.v1.1 MD06G1045200.v1.1 MD06G1045400.v1.1 MD11G1267800.v1.1 MD11G1267900.v1.1 MD11G1268100.v1.1 MD11G1268300.v1.1 MD11G1268500.v1.1 MD11G1268600.v1.1
prunus_persica Prupe.4G157700_v2.0.a1 Prupe.4G157700_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1
pyrus_communis pycom03g19540 pycom11g23600 pycom11g23630 pycom11g23690 pycom11g23720 pycom11g23730 pycom11g23740 pycom11g23750
rosa_chinensis RchiOBHm_Chr0c40g0503411 RchiOBHm_Chr0c40g0503421 RchiOBHm_Chr5g0029631 RchiOBHm_Chr5g0029661 RchiOBHm_Chr5g0029701 RchiOBHm_Chr5g0029741 RchiOBHm_Chr5g0029771 RchiOBHm_Chr5g0029781 RchiOBHm_Chr5g0029811 RchiOBHm_Chr5g0029851 RchiOBHm_Chr5g0029871 RchiOBHm_Chr5g0029891 RchiOBHm_Chr7g0222221
rosa_laevigata RLG00000017380 RLG00000032873 RLG00000033188 RLG00000033190 RLG00000033192 RLG00000033193 RLG00000033194 RLG00000033196 RLG00000033199 RLG00000033238
rosa_multiflora Rmu_co8359987.1_g000001 Rmu_co8444909.1_g000001 Rmu_sc0001608.1_g000007 Rmu_sc0001608.1_g000009 Rmu_sc0001608.1_g000013 Rmu_sc0001608.1_g000018 Rmu_sc0001608.1_g000023 Rmu_sc0001608.1_g000040 Rmu_sc0003238.1_g000016 Rmu_sc0003368.1_g000026 Rmu_sc0003368.1_g000034 Rmu_sc0003368.1_g000043 Rmu_sc0003368.1_g000047 Rmu_sc0003368.1_g000052 Rmu_sc0003368.1_g000054 Rmu_sc0004963.1_g000001
rosa_roxburghii Rroxscaffold_1G00050080 Rroxscaffold_1G00050090 Rroxscaffold_1G00050110 Rroxscaffold_1G00050120 Rroxscaffold_1G00050180 Rroxscaffold_1G00050190 Rroxscaffold_1G00050220 Rroxscaffold_1G00050270 Rroxscaffold_1G00050300
rosa_rugosa Rorug04G0065200 Rorug05G0114900 Rorug05G0115000 Rorug05G0115100 Rorug05G0120100 Rorug05G0238900
rosa_samantha Rh5AG207800 Rh5AG208000 Rh5AG208300 Rh5AG208400 Rh5AG208800 Rh5AG294900 Rh5AG295000 Rh5AG295400 Rh5CG230400 Rh7AG347800
rosa_wichuraiana Rw0G005370 Rw0G012460 Rw0G019060 Rw5G018910 Rw5G018920 Rw5G018930 Rw5G018940 Rw5G018960 Rw5G018970 Rw5G018980 Rw5G018990 Rw5G019000 Rw7G029840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccBSI CCGCTC 1 cut(s) 111
AccIII TCCGGA 1 cut(s) 328
AciI CCGC 4 cut(s) 22, 109, 282, 502
AclWI GGATC 3 cut(s) 182, 195, 338
AcsI RAATTY 1 cut(s) 63
AcuI CTGAAG 2 cut(s) 252, 276
AfiI CCNNNNNNNGG 3 cut(s) 115, 197, 428
AgsI TTSAA 6 cut(s) 211, 311, 357, 392, 404, 452
AjnI CCWGG 1 cut(s) 180
AluBI AGCT 1 cut(s) 171
AluI AGCT 1 cut(s) 171
AlwI GGATC 3 cut(s) 182, 195, 338
Aor13HI TCCGGA 1 cut(s) 328
AoxI GGCC 1 cut(s) 278
ApoI RAATTY 1 cut(s) 63
AseI ATTAAT 1 cut(s) 360
AspS9I GGNCC 2 cut(s) 178, 279
AsuHPI GGTGA 2 cut(s) 310, 428
AvaII GGWCC 1 cut(s) 178
BaeGI GKGCMC 1 cut(s) 148
BamHI GGATCC 1 cut(s) 187
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 203
BarI GAAGNNNNNNTAC 2 cut(s) 82, 114
BbsI GAAGAC 1 cut(s) 282
BciT130I CCWGG 1 cut(s) 182
BfaI CTAG 1 cut(s) 137
Bme1390I CCNGG 1 cut(s) 182
Bme18I GGWCC 1 cut(s) 178
BmgT120I GGNCC 2 cut(s) 178, 279
BmiI GGNNCC 2 cut(s) 6, 189
BmrFI CCNGG 1 cut(s) 182
BmrI ACTGGG 1 cut(s) 491
BmuI ACTGGG 1 cut(s) 491
BpiI GAAGAC 1 cut(s) 282
BpuEI CTTGAG 1 cut(s) 468
BsaJI CCNNGG 1 cut(s) 191
BsaWI WCCGGW 1 cut(s) 328
Bsc4I CCNNNNNNNGG 3 cut(s) 115, 197, 428
Bse1I ACTGG 1 cut(s) 497
Bse3DI GCAATG 1 cut(s) 24
BseAI TCCGGA 1 cut(s) 328
BseBI CCWGG 1 cut(s) 182
BseDI CCNNGG 1 cut(s) 191
BseLI CCNNNNNNNGG 3 cut(s) 115, 197, 428
BseMI GCAATG 1 cut(s) 24
BseMII CTCAG 2 cut(s) 216, 414
BseNI ACTGG 1 cut(s) 497
BseSI GKGCMC 1 cut(s) 148
BshFI GGCC 1 cut(s) 280
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 1 cut(s) 329
BslI CCNNNNNNNGG 3 cut(s) 115, 197, 428
BsmI GAATGC 1 cut(s) 128
BsnI GGCC 1 cut(s) 280
Bsp1286I GDGCHC 2 cut(s) 148, 203
Bsp13I TCCGGA 1 cut(s) 328
Bsp143I GATC 3 cut(s) 187, 234, 343
BspACI CCGC 4 cut(s) 22, 109, 282, 502
BspANI GGCC 1 cut(s) 280
BspCNI CTCAG 2 cut(s) 215, 415
BspEI TCCGGA 1 cut(s) 328
BspLI GGNNCC 2 cut(s) 6, 189
BspPI GGATC 3 cut(s) 182, 195, 338
BspT107I GGYRCC 1 cut(s) 4
BsrBI CCGCTC 1 cut(s) 111
BsrDI GCAATG 1 cut(s) 24
BsrI ACTGG 1 cut(s) 497
BssECI CCNNGG 1 cut(s) 191
BssMI GATC 3 cut(s) 187, 234, 343
BssT1I CCWWGG 1 cut(s) 191
Bst2UI CCWGG 1 cut(s) 182
Bst6I CTCTTC 1 cut(s) 213
BstC8I GCNNGC 3 cut(s) 169, 282, 305
BstDEI CTNAG 2 cut(s) 202, 423
BstEII GGTNACC 1 cut(s) 416
BstKTI GATC 3 cut(s) 190, 237, 346
BstMBI GATC 3 cut(s) 187, 234, 343
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstNI CCWGG 1 cut(s) 182
BstNSI RCATGY 1 cut(s) 307
BstPI GGTNACC 1 cut(s) 416
BstSCI CCNGG 1 cut(s) 180
BstSLI GKGCMC 1 cut(s) 148
BstV2I GAAGAC 1 cut(s) 282
BstX2I RGATCY 1 cut(s) 187
BstYI RGATCY 1 cut(s) 187
BsuRI GGCC 1 cut(s) 280
BtsIMutI CAGTG 2 cut(s) 91, 300
Cac8I GCNNGC 3 cut(s) 169, 282, 305
Cfr13I GGNCC 2 cut(s) 178, 279
CsiI ACCWGGT 1 cut(s) 180
CviAII CATG 3 cut(s) 286, 304, 513
CviJI RGCY 4 cut(s) 171, 201, 280, 320
CviKI_1 RGCY 4 cut(s) 171, 201, 280, 320
DdeI CTNAG 2 cut(s) 202, 423
DpnI GATC 3 cut(s) 189, 236, 345
DpnII GATC 3 cut(s) 187, 234, 343
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
EciI GGCGGA 1 cut(s) 491
Eco130I CCWWGG 1 cut(s) 191
Eco24I GRGCYC 1 cut(s) 203
Eco47I GGWCC 1 cut(s) 178
Eco57I CTGAAG 2 cut(s) 252, 276
Eco91I GGTNACC 1 cut(s) 416
EcoO65I GGTNACC 1 cut(s) 416
EcoRI GAATTC 1 cut(s) 63
EcoRII CCWGG 1 cut(s) 180
EcoT14I CCWWGG 1 cut(s) 191
EcoT38I GRGCYC 1 cut(s) 203
ErhI CCWWGG 1 cut(s) 191
FaeI CATG 3 cut(s) 289, 307, 516
FaiI YATR 6 cut(s) 15, 54, 287, 305, 443, 514
FatI CATG 3 cut(s) 285, 303, 512
FauI CCCGC 2 cut(s) 15, 289
FriOI GRGCYC 1 cut(s) 203
FspBI CTAG 1 cut(s) 137
HaeIII GGCC 1 cut(s) 280
HapII CCGG 1 cut(s) 329
Hin1II CATG 3 cut(s) 289, 307, 516
HindIII AAGCTT 1 cut(s) 169
HinfI GANTC 1 cut(s) 509
HpaII CCGG 1 cut(s) 329
HphI GGTGA 2 cut(s) 310, 428
Hpy166II GTNNAC 2 cut(s) 434, 462
Hpy188I TCNGA 2 cut(s) 62, 205
Hpy188III TCNNGA 3 cut(s) 137, 329, 485
Hpy8I GTNNAC 2 cut(s) 434, 462
HpyAV CCTTC 3 cut(s) 84, 305, 446
HpyCH4V TGCA 2 cut(s) 17, 96
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpyF3I CTNAG 2 cut(s) 202, 423
Hsp92II CATG 3 cut(s) 289, 307, 516
Kpn2I TCCGGA 1 cut(s) 328
Kzo9I GATC 3 cut(s) 187, 234, 343
LpnPI CCDG 7 cut(s) 21, 167, 194, 342, 435, 510, 519
MabI ACCWGGT 1 cut(s) 180
MaeI CTAG 1 cut(s) 137
MaeIII GTNAC 1 cut(s) 416
MalI GATC 3 cut(s) 189, 236, 345
MbiI CCGCTC 1 cut(s) 111
MboI GATC 3 cut(s) 187, 234, 343
MboII GAAGA 7 cut(s) 125, 131, 143, 230, 258, 282, 416
MfeI CAATTG 1 cut(s) 447
MflI RGATCY 1 cut(s) 187
MhlI GDGCHC 2 cut(s) 148, 203
MluCI AATT 4 cut(s) 63, 357, 447, 526
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 3 cut(s) 325, 372, 500
MroI TCCGGA 1 cut(s) 328
MseI TTAA 2 cut(s) 360, 529
MspI CCGG 1 cut(s) 329
MspR9I CCNGG 1 cut(s) 182
MunI CAATTG 1 cut(s) 447
Mva1269I GAATGC 1 cut(s) 128
MvaI CCWGG 1 cut(s) 182
MwoI GCNNNNNNNGC 1 cut(s) 269
NdeII GATC 3 cut(s) 187, 234, 343
NlaIII CATG 3 cut(s) 289, 307, 516
NlaIV GGNNCC 2 cut(s) 6, 189
NmuCI GTSAC 1 cut(s) 416
NspI RCATGY 1 cut(s) 307
PaeI GCATGC 1 cut(s) 307
PctI GAATGC 1 cut(s) 128
PfeI GAWTC 1 cut(s) 509
PshBI ATTAAT 1 cut(s) 360
Psp6I CCWGG 1 cut(s) 180
PspEI GGTNACC 1 cut(s) 416
PspGI CCWGG 1 cut(s) 180
PspN4I GGNNCC 2 cut(s) 6, 189
PspPI GGNCC 2 cut(s) 178, 279
PsuI RGATCY 1 cut(s) 187
SaqAI TTAA 2 cut(s) 360, 529
Sau3AI GATC 3 cut(s) 187, 234, 343
Sau96I GGNCC 2 cut(s) 178, 279
ScrFI CCNGG 1 cut(s) 182
SduI GDGCHC 2 cut(s) 148, 203
SetI ASST 8 cut(s) 10, 95, 173, 183, 197, 316, 336, 492
SexAI ACCWGGT 1 cut(s) 180
SinI GGWCC 1 cut(s) 178
SmlI CTYRAG 1 cut(s) 483
SmoI CTYRAG 1 cut(s) 483
SphI GCATGC 1 cut(s) 307
Sse9I AATT 4 cut(s) 63, 357, 447, 526
SsiI CCGC 4 cut(s) 22, 109, 282, 502
SspI AATATT 1 cut(s) 241
SspMI CTAG 1 cut(s) 137
StyD4I CCNGG 1 cut(s) 180
StyI CCWWGG 1 cut(s) 191
TasI AATT 4 cut(s) 63, 357, 447, 526
TfiI GAWTC 1 cut(s) 509
Tru1I TTAA 2 cut(s) 360, 529
Tru9I TTAA 2 cut(s) 360, 529
TscAI CASTG 2 cut(s) 91, 300
TseFI GTSAC 1 cut(s) 416
Tsp45I GTSAC 1 cut(s) 416
TspDTI ATGAA 3 cut(s) 378, 459, 501
TspRI CASTG 2 cut(s) 91, 300
VpaK11BI GGWCC 1 cut(s) 178
VspI ATTAAT 1 cut(s) 360
XapI RAATTY 1 cut(s) 63
XbaI TCTAGA 1 cut(s) 136
XceI RCATGY 1 cut(s) 307
XcmI CCANNNNNNNNNTGG 1 cut(s) 292
XspI CTAG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.