Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000292

Physical Location & Seq

Genomic Coordinates Reverse (-)

24570361 .. 24571949

Gene Structure 1589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG208400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGATTACCATCAAGGTGGCTCTCCTTTGCTGTAATGTCTCTGCAGCACTTAGGCCTGCCATGTCTTCAGTGGTAAGCATGCTTGAAGGCAGGGCTCGTGTTGAGGAGTTAGTCTTTGATTCAAGTGCCTCATTTCATGAGATCAGTGAAATGAGGAAACATTTTGAATCTAATTACTCATTGGAGACCATCGATGAGAGTACTCAGAGACAAACAATGTCAATCGAAGGGCCGTGCACTTCATCTAAATCTGTTCAAGATCTCTATCCAATCAATCCTGATTCAGATTACTGGGAGAACAGAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

102

Amino Acids

11.51

Weight (kDa)

4.7

Isoelectric Point (pI)

51.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53420 AT3G14840
fragaria_vesca	FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17851
malus_domestica	MD03G1246600.v1.1 MD06G1045200.v1.1 MD06G1045400.v1.1 MD11G1267800.v1.1 MD11G1267900.v1.1 MD11G1268100.v1.1 MD11G1268300.v1.1 MD11G1268500.v1.1 MD11G1268600.v1.1
prunus_persica	Prupe.4G157700_v2.0.a1 Prupe.4G157700_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1
pyrus_communis	pycom03g19540 pycom11g23600 pycom11g23630 pycom11g23690 pycom11g23720 pycom11g23730 pycom11g23740 pycom11g23750
rosa_chinensis	RchiOBHm_Chr0c40g0503411 RchiOBHm_Chr0c40g0503421 RchiOBHm_Chr5g0029631 RchiOBHm_Chr5g0029661 RchiOBHm_Chr5g0029701 RchiOBHm_Chr5g0029741 RchiOBHm_Chr5g0029771 RchiOBHm_Chr5g0029781 RchiOBHm_Chr5g0029811 RchiOBHm_Chr5g0029851 RchiOBHm_Chr5g0029871 RchiOBHm_Chr5g0029891 RchiOBHm_Chr7g0222221
rosa_laevigata	RLG00000017380 RLG00000032873 RLG00000033188 RLG00000033190 RLG00000033192 RLG00000033193 RLG00000033194 RLG00000033196 RLG00000033199 RLG00000033238
rosa_multiflora	Rmu_co8359987.1_g000001 Rmu_co8444909.1_g000001 Rmu_sc0001608.1_g000007 Rmu_sc0001608.1_g000009 Rmu_sc0001608.1_g000013 Rmu_sc0001608.1_g000018 Rmu_sc0001608.1_g000023 Rmu_sc0001608.1_g000040 Rmu_sc0003238.1_g000016 Rmu_sc0003368.1_g000026 Rmu_sc0003368.1_g000034 Rmu_sc0003368.1_g000043 Rmu_sc0003368.1_g000047 Rmu_sc0003368.1_g000052 Rmu_sc0003368.1_g000054 Rmu_sc0004963.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050080 Rroxscaffold_1G00050090 Rroxscaffold_1G00050110 Rroxscaffold_1G00050120 Rroxscaffold_1G00050180 Rroxscaffold_1G00050190 Rroxscaffold_1G00050220 Rroxscaffold_1G00050270 Rroxscaffold_1G00050300
rosa_rugosa	Rorug04G0065200 Rorug05G0114900 Rorug05G0115000 Rorug05G0115100 Rorug05G0120100 Rorug05G0238900
rosa_samantha	Rh5AG207800 Rh5AG208000 Rh5AG208300 Rh5AG208400 Rh5AG208800 Rh5AG294900 Rh5AG295000 Rh5AG295400 Rh5CG230400 Rh7AG347800
rosa_wichuraiana	Rw0G005370 Rw0G012460 Rw0G019060 Rw5G018910 Rw5G018920 Rw5G018930 Rw5G018940 Rw5G018960 Rw5G018970 Rw5G018980 Rw5G018990 Rw5G019000 Rw7G029840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	51
AfaI	GTAC	1 cut(s)	202
AgsI	TTSAA	4 cut(s)	86, 123, 167, 257
Alw21I	GWGCWC	1 cut(s)	239
Alw26I	GTCTC	3 cut(s)	43, 179, 202
Alw44I	GTGCAC	1 cut(s)	235
AoxI	GGCC	2 cut(s)	53, 230
ApaLI	GTGCAC	1 cut(s)	235
ApeKI	GCWGC	1 cut(s)	44
AspS9I	GGNCC	1 cut(s)	230
BaeGI	GKGCMC	1 cut(s)	239
BanII	GRGCYC	1 cut(s)	97
BauI	CACGAG	1 cut(s)	96
BbsI	GAAGAC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	239
BbvI	GCAGC	1 cut(s)	56
BccI	CCATC	2 cut(s)	17, 197
BceAI	ACGGC	1 cut(s)	217
BcoDI	GTCTC	3 cut(s)	43, 179, 202
BfmI	CTRYAG	1 cut(s)	42
BglII	AGATCT	1 cut(s)	259
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
BmcAI	AGTACT	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	230
BmrI	ACTGGG	1 cut(s)	301
BmuI	ACTGGG	1 cut(s)	301
BpiI	GAAGAC	1 cut(s)	57
Bsa29I	ATCGAT	1 cut(s)	192
BsaBI	GATNNNNATC	2 cut(s)	8, 264
BsaI	GGTCTC	1 cut(s)	179
Bse1I	ACTGG	1 cut(s)	296
Bse8I	GATNNNNATC	2 cut(s)	8, 264
BseCI	ATCGAT	1 cut(s)	192
BseJI	GATNNNNATC	2 cut(s)	8, 264
BseMII	CTCAG	1 cut(s)	218
BseNI	ACTGG	1 cut(s)	296
BseRI	GAGGAG	1 cut(s)	119
BseSI	GKGCMC	1 cut(s)	239
BseXI	GCAGC	1 cut(s)	56
BshFI	GGCC	2 cut(s)	55, 232
BshVI	ATCGAT	1 cut(s)	192
BsiHKAI	GWGCWC	1 cut(s)	239
BsmAI	GTCTC	3 cut(s)	43, 179, 202
BsnI	GGCC	2 cut(s)	55, 232
Bso31I	GGTCTC	1 cut(s)	179
Bsp1286I	GDGCHC	2 cut(s)	97, 239
Bsp143I	GATC	2 cut(s)	141, 259
BspANI	GGCC	2 cut(s)	55, 232
BspCNI	CTCAG	1 cut(s)	217
BspDI	ATCGAT	1 cut(s)	192
BspHI	TCATGA	1 cut(s)	136
BspMAI	CTGCAG	1 cut(s)	46
BspTNI	GGTCTC	1 cut(s)	179
BsrI	ACTGG	1 cut(s)	296
BssMI	GATC	2 cut(s)	141, 259
BssSI	CACGAG	1 cut(s)	96
Bst2BI	CACGAG	1 cut(s)	96
BstC8I	GCNNGC	2 cut(s)	57, 80
BstDEI	CTNAG	2 cut(s)	50, 204
BstKTI	GATC	2 cut(s)	144, 262
BstMAI	GTCTC	3 cut(s)	43, 179, 202
BstMBI	GATC	2 cut(s)	141, 259
BstNSI	RCATGY	1 cut(s)	82
BstSFI	CTRYAG	1 cut(s)	42
BstSLI	GKGCMC	1 cut(s)	239
BstV1I	GCAGC	1 cut(s)	56
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	1 cut(s)	259
BstXI	CCANNNNNNTGG	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	259
Bsu15I	ATCGAT	1 cut(s)	192
BsuRI	GGCC	2 cut(s)	55, 232
BsuTUI	ATCGAT	1 cut(s)	192
BtsIMutI	CAGTG	2 cut(s)	75, 151
Cac8I	GCNNGC	2 cut(s)	57, 80
CciI	TCATGA	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	230
ClaI	ATCGAT	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	201
CviAII	CATG	3 cut(s)	61, 79, 137
CviJI	RGCY	4 cut(s)	20, 55, 95, 232
CviKI_1	RGCY	4 cut(s)	20, 55, 95, 232
CviQI	GTAC	1 cut(s)	201
DdeI	CTNAG	2 cut(s)	50, 204
DpnI	GATC	2 cut(s)	143, 261
DpnII	GATC	2 cut(s)	141, 259
Eco147I	AGGCCT	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	97
Eco31I	GGTCTC	1 cut(s)	179
Eco57I	CTGAAG	1 cut(s)	51
EcoT38I	GRGCYC	1 cut(s)	97
FaeI	CATG	3 cut(s)	64, 82, 140
FaiI	YATR	3 cut(s)	62, 80, 138
FatI	CATG	3 cut(s)	60, 78, 136
Fnu4HI	GCNGC	1 cut(s)	45
FriOI	GRGCYC	1 cut(s)	97
Fsp4HI	GCNGC	1 cut(s)	45
GluI	GCNGC	1 cut(s)	45
HaeIII	GGCC	2 cut(s)	55, 232
Hin1II	CATG	3 cut(s)	64, 82, 140
HinfI	GANTC	3 cut(s)	119, 167, 281
Hpy166II	GTNNAC	1 cut(s)	237
Hpy188I	TCNGA	2 cut(s)	207, 286
Hpy188III	TCNNGA	3 cut(s)	137, 257, 278
Hpy8I	GTNNAC	1 cut(s)	237
HpyAV	CCTTC	2 cut(s)	80, 221
HpyCH4V	TGCA	2 cut(s)	44, 237
HpyF3I	CTNAG	2 cut(s)	50, 204
Hsp92II	CATG	3 cut(s)	64, 82, 140
Kzo9I	GATC	2 cut(s)	141, 259
LpnPI	CCDG	4 cut(s)	69, 76, 277, 291
Lsp1109I	GCAGC	1 cut(s)	56
MalI	GATC	2 cut(s)	143, 261
MboI	GATC	2 cut(s)	141, 259
MboII	GAAGA	1 cut(s)	57
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	2 cut(s)	97, 239
MluCI	AATT	1 cut(s)	172
MnlI	CCTC	3 cut(s)	97, 139, 147
MseI	TTAA	1 cut(s)	307
MslI	CAYNNNNRTG	1 cut(s)	14
NdeII	GATC	2 cut(s)	141, 259
NlaIII	CATG	3 cut(s)	64, 82, 140
NspI	RCATGY	1 cut(s)	82
PaeI	GCATGC	1 cut(s)	82
PagI	TCATGA	1 cut(s)	136
PceI	AGGCCT	1 cut(s)	55
PfeI	GAWTC	3 cut(s)	119, 167, 281
PkrI	GCNGC	1 cut(s)	46
PspPI	GGNCC	1 cut(s)	230
PstI	CTGCAG	1 cut(s)	46
PsuI	RGATCY	1 cut(s)	259
RsaI	GTAC	1 cut(s)	202
RsaNI	GTAC	1 cut(s)	201
RseI	CAYNNNNRTG	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	307
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	2 cut(s)	141, 259
Sau96I	GGNCC	1 cut(s)	230
ScaI	AGTACT	1 cut(s)	202
SduI	GDGCHC	2 cut(s)	97, 239
SetI	ASST	1 cut(s)	18
SfcI	CTRYAG	1 cut(s)	42
SmiMI	CAYNNNNRTG	1 cut(s)	14
SphI	GCATGC	1 cut(s)	82
Sse9I	AATT	1 cut(s)	172
SseBI	AGGCCT	1 cut(s)	55
StuI	AGGCCT	1 cut(s)	55
TaqI	TCGA	2 cut(s)	192, 225
TasI	AATT	1 cut(s)	172
TatI	WGTACW	1 cut(s)	200
TfiI	GAWTC	3 cut(s)	119, 167, 281
Tru1I	TTAA	1 cut(s)	307
Tru9I	TTAA	1 cut(s)	307
TscAI	CASTG	2 cut(s)	75, 151
TseI	GCWGC	1 cut(s)	44
TspDTI	ATGAA	2 cut(s)	125, 231
TspRI	CASTG	2 cut(s)	75, 151
VneI	GTGCAC	1 cut(s)	235
XceI	RCATGY	1 cut(s)	82
XcmI	CCANNNNNNNNNTGG	1 cut(s)	67
ZrmI	AGTACT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.