FvH4_3g17841

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000292
Physical Location & Seq
Reverse (-)
11353015 .. 11362208
9194 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g17841.t5

Sequence Viewer

Length: 3072 bp
ATGAATTACACGTTCTTCTTCTCTCGGCTTCTTGTTGGTTCTCTCTTGCTATCTTTCTCTGCGAGCTTTGCTTTCGGAGCTAATCGATTATCTGCAGATGAAATACAAGCTTTGAGGGACATTGGGGAGACACTGGGCAAGAGCTGGAACTTCAGCGTAGATCCATGCAGCGGAGAACAGGGATGGATTTCTGCTCCGGTAGGCCAATATATGAACAACGTCACCTGCGGCAACTGTAGTACTACCTCCAATTCTACGACCGATCAGATCTGCCATGTCACACACATACTTTTGAAAGCGCAGAATCTGACAGGACAACTGCCGCCGGAGTTGATCAACCTCCCTTATCTCCAAGAAATTGACCTCACCCGCAACTACCTAAATGGCACCATCCCTCCAAAATGGGGATCCCTGCCACTAGTTACGATTTCTCTTGTTGGAAACCGTTTGACAGGATCTATCCCTGCTGAACTAGGAAACATCACCACCCTTGAAAGTTTGGCCATCGATTTCAATAGTTTCTCTGGAGTTCTTCCTGAGGAGCTTGGAAACTTGACTCGCATACAAAGAATGCTTCTTACCTCCAACAATTTTACTGGGGAGTTGCCAGAAACATTTGCAAAGCTTACCGACTTGACTGACTTTCGGATTAGTGACAGTTCCTTTTCTGGGAAGATACCTGATTTTATTCAGGGCTGGACAAATCTTGAGGGACTAGTGATTCAGGCTAGTGGTTTTACAGGCCCAATTCCTTCCGGCATTTCTCTCTTGACAAGTATAATTGACCTGAGAATTACCGACTTGAATGGATCTGAATCATCCTTTCCTGTACTTAATAATATGACAAGCCTGGAGACATTGGTGTTGCGGAACTGCAATATTAGTGGACACCTACCCGAATTTCTTGGGAACATGTCAACTTTGAAAAAATTAGACCTTAGTTTTAACGAGCTAAGTGGAGATATCCCAAACAACTTTGCTGGTCTAGGAAATCTGGATAATTTGTTCTTAACGGGAAACATGCTGACCGGAACTGTGCCAGCTGATTGGATGAAAGCCAAGAGCATTGATCTTTCATATAACAACTTCACCATGAACTCGAATGATGAGAATTGTGAACCACAAGATGGCTTGAACTTGTTTGCAAGCTCTTTTGCTGGCAATACTTCATCTGTTTCATGTTTACCGCTTGCAAAGTGTGTAAAAACTTGGTACACTCTTCATATAAATTGTGGCGGAAAAGAAGTTCCCCTCTATGAAAATTTCACAAGACCCACTAACGCAACATATGAGGAAGATACTGATGTAGCCGGGCCTTCATCAGTTTATCTGAGCAGGACAAATTGGGCATCAAGCACCACTGGCTACTTCGCTAATGATGATCGTCCTACAAATACCTATACCTGGACTAATTCATCTGAACTCACTATGGCCAATCCTGAGTTGTACATGAATGCACGCCTTTCTCCTATTTCTCTAACTTACTATGGGTTTTGCCTCGGAAACGGAAACTACACAGTAAACCTCCACTTTGCAGAGATAATATTTGCAAATGACACAACATATAGTGGCCTGGGAAGACGTGTATTTGATATATACATTCAGGGGTCACTAGCCTTGAAGGATTTCAATATTGCAGATGCAGCTGGTGGCTTTGGTAAAGCAGTCACAAAAAAGTTCACTGCTAACGTAACTGATAGTACTCTAGAGATACGTTTATTCTGGGCTGGGAAAGGGACAACAGGTGTCCCTTACAGAGGAGACTATGGTCCTCTTATATCAGCTATCTCTATTGATTCTGACTCTCCACCCCCAGAAACTTCATCAGGAGGTGGAAGCAGTGGTATATCAGCAGGTGCAGTGGTTGGAATTGTGGCCGGAGGAGTCTTCATTATATTACTCGTTTTAGGTATCCTCTGGTGGAAAGGCTTCATAGGACCAGCAAATACTTTGGAACAAGATTTGAAGGGTGTGGACCTGCAAACCAGCAGATTTTCCTTAAGGCAAATCAAAACTGCAACAAACAACTTTGACATAATGAATAAGATTGGAGAAGGTGGTTTTGGTCCTGTTTACAAGGGCCTTCTATCTGATGACACCGCAATTGCTGTGAAGAAGCTTTCTGCCAAATCAAAGCAAGGGAATCGTGAATTTGTGAATGAAATTGGCATGATTTCAGCTCTGCAACACCCTCACCTTGTCAAGCTTTATGGATGTTGTATTGAAGGAAATGACTTGTTGCTTGTCTATGAGTACTTGGAAAATAATAGTGTTGCTCGTGCTCTGTTCGGCCCCAAAGCAAGTCAGGTGAAGATGGATTGGCGAACAAGGCACAGAATCTGTGTTGGTATAGCAAAAGGTTTGGCTTACCTCCATGAGGAATCAAGGTTGAAGATCGTTCATAGAGACATTAAAGCTACTAATGTGCTACTCGATAAAAATCTTTGTCCAAAGATAGCTGATTTTGGATTGGCCAAGCTTGATGAAGAAGATAATACCCACATAAGCACCCGGATTGCTGGAACTTTTGGATATATGGCACCCGAATATGCAATGCGAGGTTATCTGACTGATAAAGCAGATGTTTATAGTTACGGAATTGTTGTGTTGGAAATAGTCAGTGGGAGGGGCAACACAACTTACCACTCAAAGGAAGAATGTTTTTATCTTCTTGATTGGGCACTTCTTCTAAAGGAGAAAGGGAGTTTGTTGGACCTGGTGGATCCAAGGCTAGGCTCAGAGTTCAACAAAGAGGAGATGATTACTACAATCAATGTGGCTCTCCTTTGCTCTCATGTGTCTTCAGCAGTTAGGCCTTCCATGTCTTCAGTGGTGAAAATGCTTGAAGGCAGGGCTTCCGTTCAGGAGGTGATCTCTGATCCTAATGCCTCAAATAATGAAATGATTGCAATGAGGAAACATTTTCAATCCAGTTTGGAAGAACAGAATGGTGACGTTGAGAGTCAGAGACAAACCATGTCAATTGAACCATCGTGGACTTCTTCATCTACATCTGCTCAAGATCTCTATTCTGTCCATCCTGATTCCAGTTATTGGGAGAAAAGAAATTAG

Protein Analysis

1024

Amino Acids

111.87

Weight (kDa)

5.11

Isoelectric Point (pI)

30.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 229 - 288 1.2e-08 Leucine rich repeat
Malectin PF11721 352 - 542 1.5e-40 Malectin domain
Pkinase PF00069 624 - 824 2.5e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 625 - 828 1.4e-46 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000292)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53420 AT3G14840
fragaria_vesca FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17851
malus_domestica MD03G1246600.v1.1 MD06G1045200.v1.1 MD06G1045400.v1.1 MD11G1267800.v1.1 MD11G1267900.v1.1 MD11G1268100.v1.1 MD11G1268300.v1.1 MD11G1268500.v1.1 MD11G1268600.v1.1
prunus_persica Prupe.4G157700_v2.0.a1 Prupe.4G157700_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1
pyrus_communis pycom03g19540 pycom11g23600 pycom11g23630 pycom11g23690 pycom11g23720 pycom11g23730 pycom11g23740 pycom11g23750
rosa_chinensis RchiOBHm_Chr0c40g0503411 RchiOBHm_Chr0c40g0503421 RchiOBHm_Chr5g0029631 RchiOBHm_Chr5g0029661 RchiOBHm_Chr5g0029701 RchiOBHm_Chr5g0029741 RchiOBHm_Chr5g0029771 RchiOBHm_Chr5g0029781 RchiOBHm_Chr5g0029811 RchiOBHm_Chr5g0029851 RchiOBHm_Chr5g0029871 RchiOBHm_Chr5g0029891 RchiOBHm_Chr7g0222221
rosa_laevigata RLG00000017380 RLG00000032873 RLG00000033188 RLG00000033190 RLG00000033192 RLG00000033193 RLG00000033194 RLG00000033196 RLG00000033199 RLG00000033238
rosa_multiflora Rmu_co8359987.1_g000001 Rmu_co8444909.1_g000001 Rmu_sc0001608.1_g000007 Rmu_sc0001608.1_g000009 Rmu_sc0001608.1_g000013 Rmu_sc0001608.1_g000018 Rmu_sc0001608.1_g000023 Rmu_sc0001608.1_g000040 Rmu_sc0003238.1_g000016 Rmu_sc0003368.1_g000026 Rmu_sc0003368.1_g000034 Rmu_sc0003368.1_g000043 Rmu_sc0003368.1_g000047 Rmu_sc0003368.1_g000052 Rmu_sc0003368.1_g000054 Rmu_sc0004963.1_g000001
rosa_roxburghii Rroxscaffold_1G00050080 Rroxscaffold_1G00050090 Rroxscaffold_1G00050110 Rroxscaffold_1G00050120 Rroxscaffold_1G00050180 Rroxscaffold_1G00050190 Rroxscaffold_1G00050220 Rroxscaffold_1G00050270 Rroxscaffold_1G00050300
rosa_rugosa Rorug04G0065200 Rorug05G0114900 Rorug05G0115000 Rorug05G0115100 Rorug05G0120100 Rorug05G0238900
rosa_samantha Rh5AG207800 Rh5AG208000 Rh5AG208300 Rh5AG208400 Rh5AG208800 Rh5AG294900 Rh5AG295000 Rh5AG295400 Rh5CG230400 Rh7AG347800
rosa_wichuraiana Rw0G005370 Rw0G012460 Rw0G019060 Rw5G018910 Rw5G018920 Rw5G018930 Rw5G018940 Rw5G018960 Rw5G018970 Rw5G018980 Rw5G018990 Rw5G019000 Rw7G029840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 233, 1844
Acc36I ACCTGC 3 cut(s) 233, 1844, 1986
AccB1I GGYRCC 2 cut(s) 386, 2539
AccB7I CCANNNNNTGG 2 cut(s) 1127, 3054
AciI CCGC 8 cut(s) 171, 228, 323, 370, 868, 1187, 1236, 2100
AclWI GGATC 8 cut(s) 155, 402, 415, 463, 817, 2717, 2730, 2873
AcoI YGGCCR 4 cut(s) 501, 1431, 1875, 2472
AcsI RAATTY 3 cut(s) 899, 1261, 2150
AcuI CTGAAG 3 cut(s) 136, 2787, 2811
AfaI GTAC 6 cut(s) 241, 831, 1214, 1448, 1702, 2255
AflII CTTAAG 1 cut(s) 1999
AflIII ACRYGT 3 cut(s) 9, 912, 1582
AhlI ACTAGT 2 cut(s) 418, 715
AjiI CACGTC 1 cut(s) 1583
AjnI CCWGG 4 cut(s) 849, 1403, 1572, 2715
AjuI GAANNNNNNNTTGG 2 cut(s) 2046, 2078
AloI GAACNNNNNNTCC 4 cut(s) 989, 1021, 1230, 1262
Alw21I GWGCWC 1 cut(s) 2284
Alw26I GTCTC 5 cut(s) 122, 848, 1755, 2400, 2962
AlwI GGATC 8 cut(s) 155, 402, 415, 463, 817, 2717, 2730, 2873
AlwNI CAGNNNCTG 2 cut(s) 307, 2340
ApeKI GCWGC 2 cut(s) 168, 1643
ApoI RAATTY 3 cut(s) 899, 1261, 2150
Asp700I GAANNNNTTC 2 cut(s) 1625, 1928
AspLEI GCGC 1 cut(s) 301
AspS9I GGNCC 9 cut(s) 743, 1313, 1769, 1937, 1975, 2066, 2080, 2291, 2713
AsuC2I CCSGG 2 cut(s) 1312, 2512
AsuHPI GGTGA 9 cut(s) 214, 358, 475, 1081, 2186, 2320, 2845, 2881, 2963
AvaII GGWCC 5 cut(s) 1769, 1937, 1975, 2066, 2713
AxyI CCTNAGG 1 cut(s) 537
BaeGI GKGCMC 1 cut(s) 2683
BaeI ACNNNNGTAYC 2 cut(s) 1290, 1323
BalI TGGCCA 3 cut(s) 503, 1433, 2474
BamHI GGATCC 2 cut(s) 407, 2722
BanI GGYRCC 2 cut(s) 386, 2539
BauI CACGAG 1 cut(s) 2277
BbsI GAAGAC 4 cut(s) 1585, 1879, 2793, 2817
Bbv12I GWGCWC 1 cut(s) 2284
BbvI GCAGC 2 cut(s) 180, 1655
BccI CCATC 7 cut(s) 177, 398, 512, 1121, 2308, 2998, 3045
BcgI CGANNNNNNTGC 2 cut(s) 2126, 2160
BciT130I CCWGG 4 cut(s) 851, 1405, 1574, 2717
BciVI GTATCC 1 cut(s) 1922
BclI TGATCA 1 cut(s) 333
BcnI CCSGG 2 cut(s) 1312, 2512
BcoDI GTCTC 5 cut(s) 122, 848, 1755, 2400, 2962
BcuI ACTAGT 2 cut(s) 418, 715
BfaI CTAG 8 cut(s) 419, 473, 716, 729, 986, 1613, 1706, 2732
BfmI CTRYAG 2 cut(s) 93, 235
BfrI CTTAAG 1 cut(s) 1999
BfuAI ACCTGC 3 cut(s) 233, 1844, 1986
BfuI GTATCC 1 cut(s) 1922
BglII AGATCT 2 cut(s) 267, 3022
BisI GCNGC 4 cut(s) 169, 229, 323, 1644
BlsI GCNGC 4 cut(s) 170, 230, 324, 1645
BmcAI AGTACT 3 cut(s) 241, 1702, 2255
Bme1390I CCNGG 6 cut(s) 851, 1312, 1405, 1574, 2512, 2717
Bme18I GGWCC 5 cut(s) 1769, 1937, 1975, 2066, 2713
BmgBI CACGTC 1 cut(s) 1583
BmgT120I GGNCC 9 cut(s) 743, 1313, 1769, 1937, 1975, 2066, 2080, 2291, 2713
BmiI GGNNCC 5 cut(s) 388, 409, 2293, 2541, 2724
BmrFI CCNGG 6 cut(s) 851, 1312, 1405, 1574, 2512, 2717
BmrI ACTGGG 2 cut(s) 143, 606
BmsI GCATC 2 cut(s) 1358, 1630
BmuI ACTGGG 2 cut(s) 143, 606
BoxI GACNNNNGTC 1 cut(s) 1767
BpiI GAAGAC 4 cut(s) 1585, 1879, 2793, 2817
BplI GAGNNNNNCTC 2 cut(s) 2858, 2890
BpmI CTGGAG 2 cut(s) 546, 872
BpuEI CTTGAG 2 cut(s) 728, 3003
BpuMI CCSGG 2 cut(s) 1312, 2512
Bsa29I ATCGAT 2 cut(s) 85, 507
BsaBI GATNNNNATC 2 cut(s) 814, 2439
BsaJI CCNNGG 3 cut(s) 1498, 1573, 2726
BsaWI WCCGGW 2 cut(s) 196, 1028
BsaXI ACNNNNNCTCC 2 cut(s) 379, 409
Bse1I ACTGG 5 cut(s) 138, 601, 1366, 2931, 3048
Bse21I CCTNAGG 1 cut(s) 537
Bse3DI GCAATG 2 cut(s) 2559, 2916
Bse8I GATNNNNATC 2 cut(s) 814, 2439
BseBI CCWGG 4 cut(s) 851, 1405, 1574, 2717
BseCI ATCGAT 2 cut(s) 85, 507
BseDI CCNNGG 3 cut(s) 1498, 1573, 2726
BseGI GGATG 6 cut(s) 188, 390, 818, 1056, 2219, 3037
BseJI GATNNNNATC 2 cut(s) 814, 2439
BseMI GCAATG 2 cut(s) 2559, 2916
BseMII CTCAG 5 cut(s) 528, 779, 1322, 1431, 2751
BseNI ACTGG 5 cut(s) 138, 601, 1366, 2931, 3048
BseRI GAGGAG 4 cut(s) 554, 1773, 1896, 2768
BseSI GKGCMC 1 cut(s) 2683
BseXI GCAGC 2 cut(s) 180, 1655
BseYI CCCAGC 1 cut(s) 1727
BsgI GTGCAG 1 cut(s) 1878
Bsh1285I CGRYCG 1 cut(s) 261
BshNI GGYRCC 2 cut(s) 386, 2539
BshVI ATCGAT 2 cut(s) 85, 507
BsiEI CGRYCG 1 cut(s) 261
BsiHKAI GWGCWC 1 cut(s) 2284
BsiSI CCGG 7 cut(s) 197, 326, 756, 1029, 1311, 1878, 2512
BslFI GGGAC 4 cut(s) 131, 726, 1733, 1750
BsmAI GTCTC 5 cut(s) 122, 848, 1755, 2400, 2962
BsmFI GGGAC 4 cut(s) 131, 726, 1733, 1750
BsmI GAATGC 2 cut(s) 576, 1459
Bsp1286I GDGCHC 2 cut(s) 2284, 2683
Bsp1407I TGTACA 1 cut(s) 1446
BspACI CCGC 8 cut(s) 171, 228, 323, 370, 868, 1187, 1236, 2100
BspCNI CTCAG 5 cut(s) 529, 780, 1323, 1432, 2750
BspDI ATCGAT 2 cut(s) 85, 507
BspLI GGNNCC 5 cut(s) 388, 409, 2293, 2541, 2724
BspMAI CTGCAG 1 cut(s) 97
BspMI ACCTGC 3 cut(s) 233, 1844, 1986
BspPI GGATC 8 cut(s) 155, 402, 415, 463, 817, 2717, 2730, 2873
BspT107I GGYRCC 2 cut(s) 386, 2539
BspTI CTTAAG 1 cut(s) 1999
BsrDI GCAATG 2 cut(s) 2559, 2916
BsrGI TGTACA 1 cut(s) 1446
BsrI ACTGG 5 cut(s) 138, 601, 1366, 2931, 3048
BssECI CCNNGG 3 cut(s) 1498, 1573, 2726
BssSI CACGAG 1 cut(s) 2277
BssT1I CCWWGG 1 cut(s) 2726
Bst2BI CACGAG 1 cut(s) 2277
Bst2UI CCWGG 4 cut(s) 851, 1405, 1574, 2717
Bst4CI ACNGT 5 cut(s) 236, 446, 659, 1036, 1519
Bst6I CTCTTC 1 cut(s) 1224
BstAFI CTTAAG 1 cut(s) 1999
BstAUI TGTACA 1 cut(s) 1446
BstC8I GCNNGC 6 cut(s) 64, 1041, 1147, 1159, 1191, 1459
BstDEI CTNAG 7 cut(s) 537, 788, 938, 953, 1331, 1440, 2737
BstENI CCTNNNNNAGG 2 cut(s) 1755, 2375
BstF5I GGATG 6 cut(s) 188, 390, 818, 1056, 2219, 3037
BstHHI GCGC 1 cut(s) 301
BstMAI GTCTC 5 cut(s) 122, 848, 1755, 2400, 2962
BstMCI CGRYCG 1 cut(s) 261
BstMWI GCNNNNNNNGC 5 cut(s) 68, 77, 1362, 1643, 2329
BstNI CCWGG 4 cut(s) 851, 1405, 1574, 2717
BstNSI RCATGY 2 cut(s) 916, 1024
BstPAI GACNNNNGTC 1 cut(s) 1767
BstSCI CCNGG 6 cut(s) 849, 1310, 1403, 1572, 2510, 2715
BstSFI CTRYAG 2 cut(s) 93, 235
BstSLI GKGCMC 1 cut(s) 2683
BstV1I GCAGC 2 cut(s) 180, 1655
BstV2I GAAGAC 4 cut(s) 1585, 1879, 2793, 2817
BstX2I RGATCY 7 cut(s) 160, 267, 407, 455, 809, 2722, 3022
BstXI CCANNNNNNTGG 1 cut(s) 1047
BstYI RGATCY 7 cut(s) 160, 267, 407, 455, 809, 2722, 3022
Bsu15I ATCGAT 2 cut(s) 85, 507
Bsu36I CCTNAGG 1 cut(s) 537
BsuI GTATCC 1 cut(s) 1922
BsuTUI ATCGAT 2 cut(s) 85, 507
BtrI CACGTC 1 cut(s) 1583
BtsCI GGATG 6 cut(s) 188, 390, 818, 1056, 2219, 3037
BtsI GCAGTG 3 cut(s) 1680, 1846, 1866
BtsIMutI CAGTG 7 cut(s) 131, 1359, 1680, 1846, 1866, 2626, 2835
BveI ACCTGC 3 cut(s) 233, 1844, 1986
Cac8I GCNNGC 6 cut(s) 64, 1041, 1147, 1159, 1191, 1459
CaiI CAGNNNCTG 2 cut(s) 307, 2340
CfoI GCGC 1 cut(s) 301
Cfr13I GGNCC 9 cut(s) 743, 1313, 1769, 1937, 1975, 2066, 2080, 2291, 2713
ClaI ATCGAT 2 cut(s) 85, 507
CsiI ACCWGGT 1 cut(s) 2715
Csp6I GTAC 6 cut(s) 240, 830, 1213, 1447, 1701, 2254
CspCI CAANNNNNGTGG 4 cut(s) 865, 900, 2757, 2792
CviQI GTAC 6 cut(s) 240, 830, 1213, 1447, 1701, 2254
DdeI CTNAG 7 cut(s) 537, 788, 938, 953, 1331, 1440, 2737
EaeI YGGCCR 4 cut(s) 501, 1431, 1875, 2472
Eam1104I CTCTTC 1 cut(s) 1224
EarI CTCTTC 1 cut(s) 1224
EciI GGCGGA 1 cut(s) 1251
Eco130I CCWWGG 1 cut(s) 2726
Eco147I AGGCCT 1 cut(s) 2815
Eco32I GATATC 1 cut(s) 964
Eco47I GGWCC 5 cut(s) 1769, 1937, 1975, 2066, 2713
Eco57I CTGAAG 3 cut(s) 136, 2787, 2811
Eco81I CCTNAGG 1 cut(s) 537
EcoNI CCTNNNNNAGG 2 cut(s) 1755, 2375
EcoO109I RGGNCCY 1 cut(s) 2080
EcoRII CCWGG 4 cut(s) 849, 1403, 1572, 2715
EcoRV GATATC 1 cut(s) 964
EcoT14I CCWWGG 1 cut(s) 2726
ErhI CCWWGG 1 cut(s) 2726
FaqI GGGAC 4 cut(s) 131, 726, 1733, 1750
FauI CCCGC 1 cut(s) 377
FauNDI CATATG 1 cut(s) 1288
FbaI TGATCA 1 cut(s) 333
Fnu4HI GCNGC 4 cut(s) 169, 229, 323, 1644
FokI GGATG 6 cut(s) 195, 377, 805, 1063, 2226, 3024
Fsp4HI GCNGC 4 cut(s) 169, 229, 323, 1644
FspBI CTAG 8 cut(s) 419, 473, 716, 729, 986, 1613, 1706, 2732
GlaI GCGC 1 cut(s) 300
GluI GCNGC 4 cut(s) 169, 229, 323, 1644
GsaI CCCAGC 1 cut(s) 1731
GsuI CTGGAG 2 cut(s) 546, 872
HapII CCGG 7 cut(s) 197, 326, 756, 1029, 1311, 1878, 2512
HhaI GCGC 1 cut(s) 301
Hin6I GCGC 1 cut(s) 299
HinP1I GCGC 1 cut(s) 299
HincII GTYRAC 1 cut(s) 918
HindII GTYRAC 1 cut(s) 918
HindIII AAGCTT 5 cut(s) 108, 623, 2117, 2204, 2477
HpaII CCGG 7 cut(s) 197, 326, 756, 1029, 1311, 1878, 2512
HphI GGTGA 9 cut(s) 214, 358, 475, 1081, 2186, 2320, 2845, 2881, 2963
HpyAV CCTTC 9 cut(s) 762, 1326, 1615, 1960, 2048, 2093, 2219, 2826, 2840
HpyCH4III ACNGT 5 cut(s) 236, 446, 659, 1036, 1519
HpyCH4IV ACGT 6 cut(s) 11, 219, 1582, 1689, 1714, 2955
HpyF10VI GCNNNNNNNGC 5 cut(s) 68, 77, 1362, 1643, 2329
HpyF3I CTNAG 7 cut(s) 537, 788, 938, 953, 1331, 1440, 2737
HpySE526I ACGT 6 cut(s) 11, 219, 1582, 1689, 1714, 2955
HspAI GCGC 1 cut(s) 299
Ksp22I TGATCA 1 cut(s) 333
LmnI GCTCC 3 cut(s) 77, 199, 541
Lsp1109I GCAGC 2 cut(s) 180, 1655
LweI GCATC 2 cut(s) 1358, 1630
MabI ACCWGGT 1 cut(s) 2715
MaeI CTAG 8 cut(s) 419, 473, 716, 729, 986, 1613, 1706, 2732
MaeII ACGT 6 cut(s) 11, 219, 1582, 1689, 1714, 2955
MaeIII GTNAC 9 cut(s) 220, 277, 421, 653, 1608, 1666, 1690, 2591, 2951
MfeI CAATTG 2 cut(s) 2103, 2982
MflI RGATCY 7 cut(s) 160, 267, 407, 455, 809, 2722, 3022
MhlI GDGCHC 2 cut(s) 2284, 2683
MlsI TGGCCA 3 cut(s) 503, 1433, 2474
MluNI TGGCCA 3 cut(s) 503, 1433, 2474
MlyI GAGTC 4 cut(s) 550, 1796, 1893, 2971
MmeI TCCRAC 5 cut(s) 418, 609, 1846, 2589, 2691
Mox20I TGGCCA 3 cut(s) 503, 1433, 2474
MroXI GAANNNNTTC 2 cut(s) 1625, 1928
MscI TGGCCA 3 cut(s) 503, 1433, 2474
MseI TTAA 5 cut(s) 834, 945, 1010, 2000, 2412
Msp20I TGGCCA 3 cut(s) 503, 1433, 2474
MspA1I CMGCKG 3 cut(s) 171, 1043, 1646
MspCI CTTAAG 1 cut(s) 1999
MspI CCGG 7 cut(s) 197, 326, 756, 1029, 1311, 1878, 2512
MspR9I CCNGG 6 cut(s) 851, 1312, 1405, 1574, 2512, 2717
MunI CAATTG 2 cut(s) 2103, 2982
Mva1269I GAATGC 2 cut(s) 576, 1459
MvaI CCWGG 4 cut(s) 851, 1405, 1574, 2717
MwoI GCNNNNNNNGC 5 cut(s) 68, 77, 1362, 1643, 2329
NciI CCSGG 2 cut(s) 1312, 2512
NdeI CATATG 1 cut(s) 1288
NlaIV GGNNCC 5 cut(s) 388, 409, 2293, 2541, 2724
NmeAIII GCCGAG 1 cut(s) 4
NmuCI GTSAC 6 cut(s) 220, 277, 653, 1608, 1666, 2951
NspI RCATGY 2 cut(s) 916, 1024
PaqCI CACCTGC 2 cut(s) 233, 1844
PceI AGGCCT 1 cut(s) 2815
PciI ACATGT 1 cut(s) 912
PctI GAATGC 2 cut(s) 576, 1459
PdmI GAANNNNTTC 2 cut(s) 1625, 1928
PfeI GAWTC 8 cut(s) 304, 721, 815, 1796, 2143, 2337, 2381, 3044
PflMI CCANNNNNTGG 2 cut(s) 1127, 3054
PkrI GCNGC 4 cut(s) 170, 230, 324, 1645
PleI GAGTC 4 cut(s) 550, 1796, 1892, 2970
PpsI GAGTC 4 cut(s) 550, 1796, 1892, 2970
PscI ACATGT 1 cut(s) 912
PshAI GACNNNNGTC 1 cut(s) 1767
Psp6I CCWGG 4 cut(s) 849, 1403, 1572, 2715
PspFI CCCAGC 1 cut(s) 1727
PspGI CCWGG 4 cut(s) 849, 1403, 1572, 2715
PspN4I GGNNCC 5 cut(s) 388, 409, 2293, 2541, 2724
PspPI GGNCC 9 cut(s) 743, 1313, 1769, 1937, 1975, 2066, 2080, 2291, 2713
PstI CTGCAG 1 cut(s) 97
PstNI CAGNNNCTG 2 cut(s) 307, 2340
PsuI RGATCY 7 cut(s) 160, 267, 407, 455, 809, 2722, 3022
PvuII CAGCTG 2 cut(s) 1043, 1646
RsaI GTAC 6 cut(s) 241, 831, 1214, 1448, 1702, 2255
RsaNI GTAC 6 cut(s) 240, 830, 1213, 1447, 1701, 2254
SaqAI TTAA 5 cut(s) 834, 945, 1010, 2000, 2412
SatI GCNGC 4 cut(s) 169, 229, 323, 1644
Sau96I GGNCC 9 cut(s) 743, 1313, 1769, 1937, 1975, 2066, 2080, 2291, 2713
ScaI AGTACT 3 cut(s) 241, 1702, 2255
SchI GAGTC 4 cut(s) 550, 1796, 1893, 2971
ScrFI CCNGG 6 cut(s) 851, 1312, 1405, 1574, 2512, 2717
SduI GDGCHC 2 cut(s) 2284, 2683
SexAI ACCWGGT 1 cut(s) 2715
SfaNI GCATC 2 cut(s) 1358, 1630
SfcI CTRYAG 2 cut(s) 93, 235
SinI GGWCC 5 cut(s) 1769, 1937, 1975, 2066, 2713
SmlI CTYRAG 3 cut(s) 707, 1999, 3018
SmoI CTYRAG 3 cut(s) 707, 1999, 3018
SpeI ACTAGT 2 cut(s) 418, 715
SseBI AGGCCT 1 cut(s) 2815
SsiI CCGC 8 cut(s) 171, 228, 323, 370, 868, 1187, 1236, 2100
SspI AATATT 3 cut(s) 880, 1545, 1633
SspMI CTAG 8 cut(s) 419, 473, 716, 729, 986, 1613, 1706, 2732
StuI AGGCCT 1 cut(s) 2815
StyD4I CCNGG 6 cut(s) 849, 1310, 1403, 1572, 2510, 2715
StyI CCWWGG 1 cut(s) 2726
TaaI ACNGT 5 cut(s) 236, 446, 659, 1036, 1519
TaiI ACGT 6 cut(s) 14, 222, 1585, 1692, 1717, 2958
TaqI TCGA 4 cut(s) 85, 507, 1100, 2433
TaqII GACCGA 1 cut(s) 275
TatI WGTACW 5 cut(s) 239, 829, 1446, 1700, 2253
TauI GCSGC 2 cut(s) 231, 325
TfiI GAWTC 8 cut(s) 304, 721, 815, 1796, 2143, 2337, 2381, 3044
Tru1I TTAA 5 cut(s) 834, 945, 1010, 2000, 2412
Tru9I TTAA 5 cut(s) 834, 945, 1010, 2000, 2412
TscAI CASTG 7 cut(s) 138, 1366, 1687, 1846, 1866, 2626, 2835
TseFI GTSAC 6 cut(s) 220, 277, 653, 1608, 1666, 2951
TseI GCWGC 2 cut(s) 168, 1643
Tsp45I GTSAC 6 cut(s) 220, 277, 653, 1608, 1666, 2951
TspGWI ACGGA 3 cut(s) 1521, 2610, 2848
TspRI CASTG 7 cut(s) 138, 1366, 1687, 1846, 1866, 2626, 2835
Van91I CCANNNNNTGG 2 cut(s) 1127, 3054
Vha464I CTTAAG 1 cut(s) 1999
VpaK11BI GGWCC 5 cut(s) 1769, 1937, 1975, 2066, 2713
XagI CCTNNNNNAGG 2 cut(s) 1755, 2375
XapI RAATTY 3 cut(s) 899, 1261, 2150
XbaI TCTAGA 1 cut(s) 1705
XceI RCATGY 2 cut(s) 916, 1024
XcmI CCANNNNNNNNNTGG 1 cut(s) 2827
XmnI GAANNNNTTC 2 cut(s) 1625, 1928
XspI CTAG 8 cut(s) 419, 473, 716, 729, 986, 1613, 1706, 2732
ZrmI AGTACT 3 cut(s) 241, 1702, 2255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.