Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0000292

Physical Location & Seq

Genomic Coordinates Forward (+)

33405918 .. 33416188

Gene Structure 10271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1246600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1971 bp

ATGTCTAGATTCTTAACTGGAAACTTGTTGACTGGACCCCTGCCTGCTTGGCCGAAAGTCAACGTGAACTTGTTTGACAGCTCTTCAAAGGGAAATAGTTCAGGAGTTTCATGTTCCACAGCTGCAAAATGTCCAAAAACTTGGTACTCCTCCTTTCATATTAATTGTGGTGGTAAAGAAGTAACCATTGAAAATACAACATATGAGGATGACACATTTTCAGTTGGACCTTCATCATTTTACCAGAGCAGAACAAATTGGGCATTAAGCAGCACCGGTTACTTCCCTGATGATAACCGCGCTACGGACAACTTTATATGGACTAATGAAACTAGACTCTATATGGCCAATCCTCAACTGTACATGAACGCACGGCTTTCTCCCATCTCTCTAACTTACTTTGGGTTTTGTCTGCAAAACAGAAAATACACCGTAAGCCTCCATTTTGCAGAGCTAATGTTTAGAAGTGGAAACACATATAAAAGCCTGGGAAGGCGGGTATTTGATATTTACATTCAGGATATACAAGTACTGCCGGATTTCAATATTATGGATTACGCTAGTGTGTTTGGTAATGTAGTTAGCTTTACCGCTGATGTAACTAACCATACCTTGAAGATCCGTCTCTATTGGGCTGGCAAAGGGACGACAGGCATCCCTGTTAGAGGAGTCTATGGACCTCTTATATCAGCTATTTCGGTGGAACCTGCAGTCGATAATAGCTCAACAAAAACTGGAAGTAGCATATCACCTGGTGTAAATGGCGTATCTGTAGGTGCAGTGGTTGGAATTGTGGCCGGAGGAATCTTTATTATATTAGTGATACTTTGTATTCTTTGGAGGAGAGGCTCCCTAGGACAACAAAAGACATTGGAGGATGATTTAAAGGGTGTGGACCTGCAAACTGGTAAGTTTACATTCAAGCAACTCAAAGCTGCCACAACCAACTTTGACAAAGCAAATAAGATTGGCGAAGGTGGTTTTGGTTCCGTTTATAAGGGCATTCTAGCAGATGGCACCATGATTGCTGTTAAGCAGCTTTCTTCCAAATCAAAGCAAGGGAATCGTGAATTTGTGAATGAGATAGGCATGATTTCTGCTCTGCAACACCCTCATCTTGTTAGCCTCTACGGATGTTGTATTGAAGGAAATCAACTATTGCTTGTCTACGAGTACATGGAAAATAATAGTGTTGCCCATGCTTTGTTTGGGGCAGGAGAAAGTCGTTTGAAGTTGGATTGGCCAACAAGGCACAAGATATGCGTTGGTATAGCGAGAGGTTTGGCTTACCTCCATGAGGAATCAAGATTGAAGGTCGTTCATAGAGATATAAAGGCAACTAATGTGTTGCTTGATAAAAATCTAAACCCAAAAATATCTGACTTTGGATTAGCCAAACTTGATGAAGAAGATAATACACACATTAGCACCCGTATTGCCGGAACTTTTGGCTATATGGCACCTGAATATGCAATGCGGGGTTATTTGACTGATAAAGCAGATGTTTATAGTTTTGGAATTCTTGTATTGGAGATTGTTAGTGGGAGGAACAACACAAGTTACCGAACAAAAGCAGAATGCTTTTATCTTCTTGATTGGGCAACTCTTCTTAAAGCGCAAGGGAATTTGTTGGATCTAGTGGATCCACGGTTGGGTTCAAACTTCAACAAAAAAGAGATGATGGTTACAATCAACGTGGCTCTCCTTTGCTCTAGTGTCACTTCAGCAGTTAGGCCTACTATGTCTTCAGTTGTGAGCATGCTTGAAGGCAGGGTTGCTGTTCAGGAGCTAGTCTCAGATCCAAATCCCTCAAGTAATGAGATCGATGCGATGAGGAACCATTTTCAATCCTATTTAGAAGGGAGTGCAGGTGAGAGCCAGATACAAACCGAGTCAATTGAAGAGGCAAGGACTATTTCATATGCGTCTGGTCATGATCTTTATCCAATCAGTCCTGATTCGAACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

657

Amino Acids

72.18

Weight (kDa)

6.87

Isoelectric Point (pI)

33.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin	PF11721	51 - 232	1.8e-37	Malectin domain
Pkinase	PF00069	318 - 520	3.9e-46	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	320 - 525	1.6e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53420 AT3G14840
fragaria_vesca	FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17851
malus_domestica	MD03G1246600.v1.1 MD06G1045200.v1.1 MD06G1045400.v1.1 MD11G1267800.v1.1 MD11G1267900.v1.1 MD11G1268100.v1.1 MD11G1268300.v1.1 MD11G1268500.v1.1 MD11G1268600.v1.1
prunus_persica	Prupe.4G157700_v2.0.a1 Prupe.4G157700_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1
pyrus_communis	pycom03g19540 pycom11g23600 pycom11g23630 pycom11g23690 pycom11g23720 pycom11g23730 pycom11g23740 pycom11g23750
rosa_chinensis	RchiOBHm_Chr0c40g0503411 RchiOBHm_Chr0c40g0503421 RchiOBHm_Chr5g0029631 RchiOBHm_Chr5g0029661 RchiOBHm_Chr5g0029701 RchiOBHm_Chr5g0029741 RchiOBHm_Chr5g0029771 RchiOBHm_Chr5g0029781 RchiOBHm_Chr5g0029811 RchiOBHm_Chr5g0029851 RchiOBHm_Chr5g0029871 RchiOBHm_Chr5g0029891 RchiOBHm_Chr7g0222221
rosa_laevigata	RLG00000017380 RLG00000032873 RLG00000033188 RLG00000033190 RLG00000033192 RLG00000033193 RLG00000033194 RLG00000033196 RLG00000033199 RLG00000033238
rosa_multiflora	Rmu_co8359987.1_g000001 Rmu_co8444909.1_g000001 Rmu_sc0001608.1_g000007 Rmu_sc0001608.1_g000009 Rmu_sc0001608.1_g000013 Rmu_sc0001608.1_g000018 Rmu_sc0001608.1_g000023 Rmu_sc0001608.1_g000040 Rmu_sc0003238.1_g000016 Rmu_sc0003368.1_g000026 Rmu_sc0003368.1_g000034 Rmu_sc0003368.1_g000043 Rmu_sc0003368.1_g000047 Rmu_sc0003368.1_g000052 Rmu_sc0003368.1_g000054 Rmu_sc0004963.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050080 Rroxscaffold_1G00050090 Rroxscaffold_1G00050110 Rroxscaffold_1G00050120 Rroxscaffold_1G00050180 Rroxscaffold_1G00050190 Rroxscaffold_1G00050220 Rroxscaffold_1G00050270 Rroxscaffold_1G00050300
rosa_rugosa	Rorug04G0065200 Rorug05G0114900 Rorug05G0115000 Rorug05G0115100 Rorug05G0120100 Rorug05G0238900
rosa_samantha	Rh5AG207800 Rh5AG208000 Rh5AG208300 Rh5AG208400 Rh5AG208800 Rh5AG294900 Rh5AG295000 Rh5AG295400 Rh5CG230400 Rh7AG347800
rosa_wichuraiana	Rw0G005370 Rw0G012460 Rw0G019060 Rw5G018910 Rw5G018920 Rw5G018930 Rw5G018940 Rw5G018960 Rw5G018970 Rw5G018980 Rw5G018990 Rw5G019000 Rw7G029840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	996
AarI	CACCTGC	1 cut(s)	1859
Acc36I	ACCTGC	3 cut(s)	715, 906, 1859
AccB1I	GGYRCC	2 cut(s)	1016, 1459
AccI	GTMKAC	1 cut(s)	1167
AccII	CGCG	1 cut(s)	300
AciI	CCGC	4 cut(s)	298, 496, 591, 1477
AclWI	GGATC	5 cut(s)	613, 1637, 1641, 1650, 1793
AcoI	YGGCCR	4 cut(s)	50, 345, 795, 1241
AcsI	RAATTY	3 cut(s)	1070, 1518, 1624
AcuI	CTGAAG	2 cut(s)	1707, 1731
AdeI	CACNNNGTG	1 cut(s)	755
AfaI	GTAC	4 cut(s)	146, 362, 531, 1175
AfiI	CCNNNNNNNGG	4 cut(s)	304, 665, 1297, 1652
AgeI	ACCGGT	1 cut(s)	275
AjnI	CCWGG	2 cut(s)	486, 751
AjuI	GAANNNNNNNTTGG	2 cut(s)	966, 998
AluBI	AGCT	9 cut(s)	81, 122, 454, 585, 692, 723, 935, 1039, 1789
AluI	AGCT	9 cut(s)	81, 122, 454, 585, 692, 723, 935, 1039, 1789
Alw26I	GTCTC	2 cut(s)	629, 1798
AlwI	GGATC	5 cut(s)	613, 1637, 1641, 1650, 1793
AoxI	GGCC	5 cut(s)	50, 345, 795, 1241, 1733
ApeKI	GCWGC	4 cut(s)	122, 270, 935, 1036
ApoI	RAATTY	3 cut(s)	1070, 1518, 1624
AseI	ATTAAT	1 cut(s)	162
AsiGI	ACCGGT	1 cut(s)	275
Asp700I	GAANNNNTTC	1 cut(s)	97
AspA2I	CCTAGG	1 cut(s)	853
AspLEI	GCGC	2 cut(s)	302, 1618
AspS9I	GGNCC	4 cut(s)	35, 227, 677, 895
AsuHPI	GGTGA	2 cut(s)	741, 1883
AsuII	TTCGAA	1 cut(s)	1961
AvaII	GGWCC	4 cut(s)	35, 227, 677, 895
AvrII	CCTAGG	1 cut(s)	853
BalI	TGGCCA	2 cut(s)	347, 1243
BamHI	GGATCC	1 cut(s)	1642
BanI	GGYRCC	2 cut(s)	1016, 1459
BbsI	GAAGAC	1 cut(s)	1737
BbvI	GCAGC	4 cut(s)	109, 282, 922, 1048
BccI	CCATC	3 cut(s)	392, 1007, 1675
BceAI	ACGGC	1 cut(s)	389
BcgI	CGANNNNNNTGC	2 cut(s)	1046, 1080
BciT130I	CCWGG	2 cut(s)	488, 753
BcoDI	GTCTC	2 cut(s)	629, 1798
BfaI	CTAG	8 cut(s)	6, 333, 561, 854, 1007, 1637, 1713, 1790
BfmI	CTRYAG	2 cut(s)	708, 771
BfuAI	ACCTGC	3 cut(s)	715, 906, 1859
BglI	GCCNNNNNGGC	2 cut(s)	49, 1249
BisI	GCNGC	4 cut(s)	123, 271, 936, 1037
BlnI	CCTAGG	1 cut(s)	853
BlsI	GCNGC	4 cut(s)	124, 272, 937, 1038
BmcAI	AGTACT	1 cut(s)	531
Bme1390I	CCNGG	2 cut(s)	488, 753
Bme18I	GGWCC	4 cut(s)	35, 227, 677, 895
BmgT120I	GGNCC	4 cut(s)	35, 227, 677, 895
BmiI	GGNNCC	8 cut(s)	37, 705, 850, 988, 1018, 1461, 1644, 1838
BmrFI	CCNGG	2 cut(s)	488, 753
BmsI	GCATC	2 cut(s)	663, 1816
BpiI	GAAGAC	1 cut(s)	1737
BplI	GAGNNNNNCTC	2 cut(s)	1778, 1810
Bpu14I	TTCGAA	1 cut(s)	1961
BpuEI	CTTGAG	1 cut(s)	1795
Bsa29I	ATCGAT	1 cut(s)	1824
BsaBI	GATNNNNATC	3 cut(s)	1359, 1803, 1941
BsaJI	CCNNGG	3 cut(s)	487, 853, 1646
BsaWI	WCCGGW	1 cut(s)	275
BsaXI	ACNNNNNCTCC	2 cut(s)	1855, 1885
Bsc4I	CCNNNNNNNGG	4 cut(s)	304, 665, 1297, 1652
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	4 cut(s)	22, 37, 739, 910
Bse3DI	GCAATG	1 cut(s)	1479
Bse8I	GATNNNNATC	3 cut(s)	1359, 1803, 1941
BseBI	CCWGG	2 cut(s)	488, 753
BseCI	ATCGAT	1 cut(s)	1824
BseDI	CCNNGG	3 cut(s)	487, 853, 1646
BseGI	GGATG	4 cut(s)	214, 654, 883, 1139
BseJI	GATNNNNATC	3 cut(s)	1359, 1803, 1941
BseLI	CCNNNNNNNGG	4 cut(s)	304, 665, 1297, 1652
BseMI	GCAATG	1 cut(s)	1479
BseMII	CTCAG	1 cut(s)	1809
BseNI	ACTGG	4 cut(s)	22, 37, 739, 910
BseRI	GAGGAG	3 cut(s)	139, 681, 856
BseXI	GCAGC	4 cut(s)	109, 282, 922, 1048
BsgI	GTGCAG	2 cut(s)	798, 1887
Bsh1236I	CGCG	1 cut(s)	300
BshFI	GGCC	5 cut(s)	52, 347, 797, 1243, 1735
BshNI	GGYRCC	2 cut(s)	1016, 1459
BshTI	ACCGGT	1 cut(s)	275
BshVI	ATCGAT	1 cut(s)	1824
BsiSI	CCGG	4 cut(s)	276, 536, 798, 1440
BslFI	GGGAC	1 cut(s)	658
BslI	CCNNNNNNNGG	4 cut(s)	304, 665, 1297, 1652
BsmAI	GTCTC	2 cut(s)	629, 1798
BsmBI	CGTCTC	1 cut(s)	629
BsmFI	GGGAC	1 cut(s)	658
BsmI	GAATGC	2 cut(s)	1002, 1583
BsnI	GGCC	5 cut(s)	52, 347, 797, 1243, 1735
Bsp119I	TTCGAA	1 cut(s)	1961
Bsp1407I	TGTACA	1 cut(s)	360
Bsp143I	GATC	6 cut(s)	618, 1633, 1642, 1798, 1821, 1936
BspACI	CCGC	4 cut(s)	298, 496, 591, 1477
BspANI	GGCC	5 cut(s)	52, 347, 797, 1243, 1735
BspCNI	CTCAG	1 cut(s)	1808
BspDI	ATCGAT	1 cut(s)	1824
BspFNI	CGCG	1 cut(s)	300
BspHI	TCATGA	1 cut(s)	1933
BspLI	GGNNCC	8 cut(s)	37, 705, 850, 988, 1018, 1461, 1644, 1838
BspMAI	CTGCAG	1 cut(s)	712
BspMI	ACCTGC	3 cut(s)	715, 906, 1859
BspPI	GGATC	5 cut(s)	613, 1637, 1641, 1650, 1793
BspQI	GCTCTTC	1 cut(s)	88
BspT104I	TTCGAA	1 cut(s)	1961
BspT107I	GGYRCC	2 cut(s)	1016, 1459
BsrDI	GCAATG	1 cut(s)	1479
BsrFI	RCCGGY	1 cut(s)	275
BsrGI	TGTACA	1 cut(s)	360
BsrI	ACTGG	4 cut(s)	22, 37, 739, 910
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	3 cut(s)	487, 853, 1646
BssMI	GATC	6 cut(s)	618, 1633, 1642, 1798, 1821, 1936
BssT1I	CCWWGG	1 cut(s)	853
Bst2UI	CCWGG	2 cut(s)	488, 753
Bst4CI	ACNGT	3 cut(s)	360, 433, 1650
Bst6I	CTCTTC	3 cut(s)	88, 1611, 1896
BstAUI	TGTACA	1 cut(s)	360
BstBI	TTCGAA	1 cut(s)	1961
BstC8I	GCNNGC	3 cut(s)	45, 637, 1760
BstDEI	CTNAG	1 cut(s)	1795
BstDSI	CCRYGG	1 cut(s)	1646
BstENI	CCTNNNNNAGG	2 cut(s)	663, 1295
BstF5I	GGATG	4 cut(s)	214, 654, 883, 1139
BstFNI	CGCG	1 cut(s)	300
BstHHI	GCGC	2 cut(s)	302, 1618
BstKTI	GATC	6 cut(s)	621, 1636, 1645, 1801, 1824, 1939
BstMAI	GTCTC	2 cut(s)	629, 1798
BstMBI	GATC	6 cut(s)	618, 1633, 1642, 1798, 1821, 1936
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 1249
BstNI	CCWGG	2 cut(s)	488, 753
BstNSI	RCATGY	1 cut(s)	1762
BstSCI	CCNGG	2 cut(s)	486, 751
BstSFI	CTRYAG	2 cut(s)	708, 771
BstUI	CGCG	1 cut(s)	300
BstV1I	GCAGC	4 cut(s)	109, 282, 922, 1048
BstV2I	GAAGAC	1 cut(s)	1737
BstX2I	RGATCY	4 cut(s)	618, 1633, 1642, 1798
BstXI	CCANNNNNNTGG	1 cut(s)	141
BstYI	RGATCY	4 cut(s)	618, 1633, 1642, 1798
Bsu15I	ATCGAT	1 cut(s)	1824
BsuRI	GGCC	5 cut(s)	52, 347, 797, 1243, 1735
BsuTUI	ATCGAT	1 cut(s)	1824
BtgI	CCRYGG	1 cut(s)	1646
BtgZI	GCGATG	1 cut(s)	1844
BtsCI	GGATG	4 cut(s)	214, 654, 883, 1139
BtsI	GCAGTG	1 cut(s)	786
BtsIMutI	CAGTG	1 cut(s)	786
BveI	ACCTGC	3 cut(s)	715, 906, 1859
Cac8I	GCNNGC	3 cut(s)	45, 637, 1760
CciI	TCATGA	1 cut(s)	1933
CfoI	GCGC	2 cut(s)	302, 1618
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	4 cut(s)	35, 227, 677, 895
ClaI	ATCGAT	1 cut(s)	1824
CseI	GACGC	1 cut(s)	1914
CsiI	ACCWGGT	1 cut(s)	751
Csp6I	GTAC	4 cut(s)	145, 361, 530, 1174
CspAI	ACCGGT	1 cut(s)	275
CspCI	CAANNNNNGTGG	2 cut(s)	1677, 1712
CviAII	CATG	9 cut(s)	111, 364, 1021, 1090, 1177, 1199, 1295, 1759, 1934
CviQI	GTAC	4 cut(s)	145, 361, 530, 1174
DdeI	CTNAG	1 cut(s)	1795
DpnI	GATC	6 cut(s)	620, 1635, 1644, 1800, 1823, 1938
DpnII	GATC	6 cut(s)	618, 1633, 1642, 1798, 1821, 1936
DraI	TTTAAA	1 cut(s)	885
DraIII	CACNNNGTG	1 cut(s)	755
EaeI	YGGCCR	4 cut(s)	50, 345, 795, 1241
Eam1104I	CTCTTC	3 cut(s)	88, 1611, 1896
EarI	CTCTTC	3 cut(s)	88, 1611, 1896
Eco130I	CCWWGG	1 cut(s)	853
Eco147I	AGGCCT	1 cut(s)	1735
Eco47I	GGWCC	4 cut(s)	35, 227, 677, 895
Eco57I	CTGAAG	2 cut(s)	1707, 1731
EcoNI	CCTNNNNNAGG	2 cut(s)	663, 1295
EcoRI	GAATTC	1 cut(s)	1518
EcoRII	CCWGG	2 cut(s)	486, 751
EcoT14I	CCWWGG	1 cut(s)	853
ErhI	CCWWGG	1 cut(s)	853
Esp3I	CGTCTC	1 cut(s)	629
FaeI	CATG	9 cut(s)	114, 367, 1024, 1093, 1180, 1202, 1298, 1762, 1937
FaqI	GGGAC	1 cut(s)	658
FatI	CATG	9 cut(s)	110, 363, 1020, 1089, 1176, 1198, 1294, 1758, 1933
FauI	CCCGC	2 cut(s)	489, 1470
FauNDI	CATATG	2 cut(s)	202, 1921
FblI	GTMKAC	1 cut(s)	1167
Fnu4HI	GCNGC	4 cut(s)	123, 271, 936, 1037
FokI	GGATG	4 cut(s)	221, 641, 890, 1146
Fsp4HI	GCNGC	4 cut(s)	123, 271, 936, 1037
FspBI	CTAG	8 cut(s)	6, 333, 561, 854, 1007, 1637, 1713, 1790
GlaI	GCGC	2 cut(s)	301, 1617
GluI	GCNGC	4 cut(s)	123, 271, 936, 1037
HaeIII	GGCC	5 cut(s)	52, 347, 797, 1243, 1735
HapII	CCGG	4 cut(s)	276, 536, 798, 1440
HgaI	GACGC	1 cut(s)	1914
HhaI	GCGC	2 cut(s)	302, 1618
Hin1II	CATG	9 cut(s)	114, 367, 1024, 1093, 1180, 1202, 1298, 1762, 1937
Hin6I	GCGC	2 cut(s)	300, 1616
HinP1I	GCGC	2 cut(s)	300, 1616
HincII	GTYRAC	2 cut(s)	30, 61
HindII	GTYRAC	2 cut(s)	30, 61
HinfI	GANTC	8 cut(s)	9, 336, 669, 804, 1063, 1301, 1892, 1958
HpaII	CCGG	4 cut(s)	276, 536, 798, 1440
HphI	GGTGA	2 cut(s)	741, 1883
Hpy166II	GTNNAC	6 cut(s)	30, 61, 67, 895, 915, 1168
Hpy188I	TCNGA	2 cut(s)	1381, 1798
Hpy188III	TCNNGA	9 cut(s)	6, 102, 518, 1067, 1305, 1592, 1784, 1934, 1955
Hpy8I	GTNNAC	6 cut(s)	30, 61, 67, 895, 915, 1168
HpyAV	CCTTC	7 cut(s)	240, 486, 968, 1139, 1306, 1760, 1853
HpyCH4III	ACNGT	3 cut(s)	360, 433, 1650
HpyCH4IV	ACGT	2 cut(s)	63, 1695
HpyCH4V	TGCA	9 cut(s)	125, 415, 449, 710, 779, 901, 1105, 1472, 1868
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 1249
HpyF3I	CTNAG	1 cut(s)	1795
HpySE526I	ACGT	2 cut(s)	63, 1695
Hsp92II	CATG	9 cut(s)	114, 367, 1024, 1093, 1180, 1202, 1298, 1762, 1937
HspAI	GCGC	2 cut(s)	300, 1616
Kzo9I	GATC	6 cut(s)	618, 1633, 1642, 1798, 1821, 1936
LguI	GCTCTTC	1 cut(s)	88
LmnI	GCTCC	2 cut(s)	854, 1786
Lsp1109I	GCAGC	4 cut(s)	109, 282, 922, 1048
LweI	GCATC	2 cut(s)	663, 1816
MabI	ACCWGGT	1 cut(s)	751
MaeI	CTAG	8 cut(s)	6, 333, 561, 854, 1007, 1637, 1713, 1790
MaeII	ACGT	2 cut(s)	63, 1695
MaeIII	GTNAC	6 cut(s)	181, 278, 598, 1559, 1684, 1717
MalI	GATC	6 cut(s)	620, 1635, 1644, 1800, 1823, 1938
MboI	GATC	6 cut(s)	618, 1633, 1642, 1798, 1821, 1936
MboII	GAAGA	9 cut(s)	75, 628, 1035, 1418, 1421, 1580, 1598, 1737, 1913
MfeI	CAATTG	1 cut(s)	1896
MflI	RGATCY	4 cut(s)	618, 1633, 1642, 1798
MlsI	TGGCCA	2 cut(s)	347, 1243
MluCI	AATT	7 cut(s)	163, 256, 789, 1070, 1518, 1624, 1896
MluNI	TGGCCA	2 cut(s)	347, 1243
MlyI	GAGTC	3 cut(s)	330, 678, 1901
MmeI	TCCRAC	4 cut(s)	205, 766, 1215, 1611
Mox20I	TGGCCA	2 cut(s)	347, 1243
MroXI	GAANNNNTTC	1 cut(s)	97
MscI	TGGCCA	2 cut(s)	347, 1243
MseI	TTAA	6 cut(s)	14, 162, 266, 884, 1032, 1611
Msp20I	TGGCCA	2 cut(s)	347, 1243
MspA1I	CMGCKG	2 cut(s)	122, 593
MspI	CCGG	4 cut(s)	276, 536, 798, 1440
MspR9I	CCNGG	2 cut(s)	488, 753
MunI	CAATTG	1 cut(s)	1896
Mva1269I	GAATGC	2 cut(s)	1002, 1583
MvaI	CCWGG	2 cut(s)	488, 753
MvnI	CGCG	1 cut(s)	300
MwoI	GCNNNNNNNGC	2 cut(s)	49, 1249
NdeI	CATATG	2 cut(s)	202, 1921
NdeII	GATC	6 cut(s)	618, 1633, 1642, 1798, 1821, 1936
NlaIII	CATG	9 cut(s)	114, 367, 1024, 1093, 1180, 1202, 1298, 1762, 1937
NlaIV	GGNNCC	8 cut(s)	37, 705, 850, 988, 1018, 1461, 1644, 1838
NmuCI	GTSAC	1 cut(s)	1717
NspI	RCATGY	1 cut(s)	1762
NspV	TTCGAA	1 cut(s)	1961
PaeI	GCATGC	1 cut(s)	1762
PagI	TCATGA	1 cut(s)	1933
PaqCI	CACCTGC	1 cut(s)	1859
PceI	AGGCCT	1 cut(s)	1735
PciSI	GCTCTTC	1 cut(s)	88
PctI	GAATGC	2 cut(s)	1002, 1583
PdmI	GAANNNNTTC	1 cut(s)	97
PfeI	GAWTC	5 cut(s)	9, 804, 1063, 1301, 1958
PinAI	ACCGGT	1 cut(s)	275
PkrI	GCNGC	4 cut(s)	124, 272, 937, 1038
PleI	GAGTC	3 cut(s)	330, 677, 1900
PpsI	GAGTC	3 cut(s)	330, 677, 1900
PshBI	ATTAAT	1 cut(s)	162
PsiI	TTATAA	1 cut(s)	996
Psp6I	CCWGG	2 cut(s)	486, 751
PspGI	CCWGG	2 cut(s)	486, 751
PspN4I	GGNNCC	8 cut(s)	37, 705, 850, 988, 1018, 1461, 1644, 1838
PspPI	GGNCC	4 cut(s)	35, 227, 677, 895
PstI	CTGCAG	1 cut(s)	712
PsuI	RGATCY	4 cut(s)	618, 1633, 1642, 1798
PvuII	CAGCTG	1 cut(s)	122
RsaI	GTAC	4 cut(s)	146, 362, 531, 1175
RsaNI	GTAC	4 cut(s)	145, 361, 530, 1174
SapI	GCTCTTC	1 cut(s)	88
SaqAI	TTAA	6 cut(s)	14, 162, 266, 884, 1032, 1611
SatI	GCNGC	4 cut(s)	123, 271, 936, 1037
Sau3AI	GATC	6 cut(s)	618, 1633, 1642, 1798, 1821, 1936
Sau96I	GGNCC	4 cut(s)	35, 227, 677, 895
ScaI	AGTACT	1 cut(s)	531
SchI	GAGTC	3 cut(s)	330, 678, 1901
ScrFI	CCNGG	2 cut(s)	488, 753
SexAI	ACCWGGT	1 cut(s)	751
SfaNI	GCATC	2 cut(s)	663, 1816
SfcI	CTRYAG	2 cut(s)	708, 771
SfuI	TTCGAA	1 cut(s)	1961
SinI	GGWCC	4 cut(s)	35, 227, 677, 895
SmlI	CTYRAG	1 cut(s)	1810
SmoI	CTYRAG	1 cut(s)	1810
SphI	GCATGC	1 cut(s)	1762
Sse9I	AATT	7 cut(s)	163, 256, 789, 1070, 1518, 1624, 1896
SseBI	AGGCCT	1 cut(s)	1735
SsiI	CCGC	4 cut(s)	298, 496, 591, 1477
SspI	AATATT	1 cut(s)	547
SspMI	CTAG	8 cut(s)	6, 333, 561, 854, 1007, 1637, 1713, 1790
StuI	AGGCCT	1 cut(s)	1735
StyD4I	CCNGG	2 cut(s)	486, 751
StyI	CCWWGG	1 cut(s)	853
TaaI	ACNGT	3 cut(s)	360, 433, 1650
TaiI	ACGT	2 cut(s)	66, 1698
TaqI	TCGA	3 cut(s)	714, 1824, 1961
TasI	AATT	7 cut(s)	163, 256, 789, 1070, 1518, 1624, 1896
TatI	WGTACW	3 cut(s)	360, 529, 1173
TfiI	GAWTC	5 cut(s)	9, 804, 1063, 1301, 1958
Tru1I	TTAA	6 cut(s)	14, 162, 266, 884, 1032, 1611
Tru9I	TTAA	6 cut(s)	14, 162, 266, 884, 1032, 1611
TscAI	CASTG	1 cut(s)	786
TseFI	GTSAC	1 cut(s)	1717
TseI	GCWGC	4 cut(s)	122, 270, 935, 1036
Tsp45I	GTSAC	1 cut(s)	1717
TspDTI	ATGAA	8 cut(s)	99, 146, 222, 342, 380, 1310, 1419, 1908
TspGWI	ACGGA	4 cut(s)	320, 611, 979, 1146
TspRI	CASTG	1 cut(s)	786
VpaK11BI	GGWCC	4 cut(s)	35, 227, 677, 895
VspI	ATTAAT	1 cut(s)	162
XagI	CCTNNNNNAGG	2 cut(s)	663, 1295
XapI	RAATTY	3 cut(s)	1070, 1518, 1624
XbaI	TCTAGA	1 cut(s)	5
XceI	RCATGY	1 cut(s)	1762
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1205
XmaJI	CCTAGG	1 cut(s)	853
XmiI	GTMKAC	1 cut(s)	1167
XmnI	GAANNNNTTC	1 cut(s)	97
XspI	CTAG	8 cut(s)	6, 333, 561, 854, 1007, 1637, 1713, 1790
ZrmI	AGTACT	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.