Rorug04G0065200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000292
Physical Location & Seq
Reverse (-)
10076539 .. 10077639
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0065200.1

Sequence Viewer

Length: 450 bp
ATGATGAACCTCTGGAAGAAGACGACGACGAAGACCAAGATCTGGGAGGAGGGCTCTCAAGTAATCTTAATCGAATCCATGATCTACCAGAATACTGTTGGTCCTATGTTCAGGACTGTTGATGGGGAATTCCCCAAGAGGAGTCTAAGAGCAGAGGAGATAAAGAAAAGAGTGCACGGCTGGTATGGGAGTCTAAGAGCACAAGGAGACCATAATGCAATTGGGACTTGGGAAATGTTGGTTGATGTCTGTGTTCATAACCAAAGCGTGAAGCTGGTTCGGGTGGCTGAAGGAGTGCACAGTTCAGATGCGTTTTTAAAGAGCCCGGAGCGACGCCTTAAGAAGATAACCTGGAGTGTAGTTTCATTTGTCATCTTCACTAGTCCAGTTTTTGGCGACCTTTCTTCTTTTTTAGCTTCCATGACTTACAACTGCAAACTAGTTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

17.01

Weight (kDa)

9.48

Isoelectric Point (pI)

42.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000292)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53420 AT3G14840
fragaria_vesca FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17851
malus_domestica MD03G1246600.v1.1 MD06G1045200.v1.1 MD06G1045400.v1.1 MD11G1267800.v1.1 MD11G1267900.v1.1 MD11G1268100.v1.1 MD11G1268300.v1.1 MD11G1268500.v1.1 MD11G1268600.v1.1
prunus_persica Prupe.4G157700_v2.0.a1 Prupe.4G157700_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1
pyrus_communis pycom03g19540 pycom11g23600 pycom11g23630 pycom11g23690 pycom11g23720 pycom11g23730 pycom11g23740 pycom11g23750
rosa_chinensis RchiOBHm_Chr0c40g0503411 RchiOBHm_Chr0c40g0503421 RchiOBHm_Chr5g0029631 RchiOBHm_Chr5g0029661 RchiOBHm_Chr5g0029701 RchiOBHm_Chr5g0029741 RchiOBHm_Chr5g0029771 RchiOBHm_Chr5g0029781 RchiOBHm_Chr5g0029811 RchiOBHm_Chr5g0029851 RchiOBHm_Chr5g0029871 RchiOBHm_Chr5g0029891 RchiOBHm_Chr7g0222221
rosa_laevigata RLG00000017380 RLG00000032873 RLG00000033188 RLG00000033190 RLG00000033192 RLG00000033193 RLG00000033194 RLG00000033196 RLG00000033199 RLG00000033238
rosa_multiflora Rmu_co8359987.1_g000001 Rmu_co8444909.1_g000001 Rmu_sc0001608.1_g000007 Rmu_sc0001608.1_g000009 Rmu_sc0001608.1_g000013 Rmu_sc0001608.1_g000018 Rmu_sc0001608.1_g000023 Rmu_sc0001608.1_g000040 Rmu_sc0003238.1_g000016 Rmu_sc0003368.1_g000026 Rmu_sc0003368.1_g000034 Rmu_sc0003368.1_g000043 Rmu_sc0003368.1_g000047 Rmu_sc0003368.1_g000052 Rmu_sc0003368.1_g000054 Rmu_sc0004963.1_g000001
rosa_roxburghii Rroxscaffold_1G00050080 Rroxscaffold_1G00050090 Rroxscaffold_1G00050110 Rroxscaffold_1G00050120 Rroxscaffold_1G00050180 Rroxscaffold_1G00050190 Rroxscaffold_1G00050220 Rroxscaffold_1G00050270 Rroxscaffold_1G00050300
rosa_rugosa Rorug04G0065200 Rorug05G0114900 Rorug05G0115000 Rorug05G0115100 Rorug05G0120100 Rorug05G0238900
rosa_samantha Rh5AG207800 Rh5AG208000 Rh5AG208300 Rh5AG208400 Rh5AG208800 Rh5AG294900 Rh5AG295000 Rh5AG295400 Rh5CG230400 Rh7AG347800
rosa_wichuraiana Rw0G005370 Rw0G012460 Rw0G019060 Rw5G018910 Rw5G018920 Rw5G018930 Rw5G018940 Rw5G018960 Rw5G018970 Rw5G018980 Rw5G018990 Rw5G019000 Rw7G029840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 42, 392
AcsI RAATTY 1 cut(s) 128
AcuI CTGAAG 1 cut(s) 309
AcyI GRCGYC 1 cut(s) 334
AfiI CCNNNNNNNGG 2 cut(s) 42, 392
AflII CTTAAG 1 cut(s) 338
AhlI ACTAGT 2 cut(s) 380, 439
AjnI CCWGG 1 cut(s) 350
AluBI AGCT 2 cut(s) 274, 416
AluI AGCT 2 cut(s) 274, 416
Alw21I GWGCWC 3 cut(s) 177, 202, 300
Alw26I GTCTC 1 cut(s) 201
Alw44I GTGCAC 2 cut(s) 173, 296
ApaLI GTGCAC 2 cut(s) 173, 296
ApoI RAATTY 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 101
AsuC2I CCSGG 1 cut(s) 326
AvaII GGWCC 1 cut(s) 101
BaeGI GKGCMC 2 cut(s) 177, 300
BanII GRGCYC 2 cut(s) 56, 326
BbsI GAAGAC 2 cut(s) 26, 38
Bbv12I GWGCWC 3 cut(s) 177, 202, 300
BccI CCATC 1 cut(s) 116
BceAI ACGGC 1 cut(s) 193
BciT130I CCWGG 1 cut(s) 352
BcnI CCSGG 1 cut(s) 326
BcoDI GTCTC 1 cut(s) 201
BcuI ACTAGT 2 cut(s) 380, 439
BfaI CTAG 2 cut(s) 381, 440
BfrI CTTAAG 1 cut(s) 338
BglII AGATCT 1 cut(s) 39
Bme1390I CCNGG 2 cut(s) 326, 352
Bme18I GGWCC 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 101
BmrFI CCNGG 2 cut(s) 326, 352
BmsI GCATC 1 cut(s) 298
BpiI GAAGAC 2 cut(s) 26, 38
BplI GAGNNNNNCTC 2 cut(s) 38, 70
BpmI CTGGAG 1 cut(s) 373
BpuEI CTTGAG 1 cut(s) 42
BpuMI CCSGG 1 cut(s) 326
BsaHI GRCGYC 1 cut(s) 334
BsaI GGTCTC 1 cut(s) 201
Bsc4I CCNNNNNNNGG 2 cut(s) 42, 392
Bse1I ACTGG 1 cut(s) 386
BseBI CCWGG 1 cut(s) 352
BseLI CCNNNNNNNGG 2 cut(s) 42, 392
BseNI ACTGG 1 cut(s) 386
BseRI GAGGAG 3 cut(s) 62, 154, 170
BseSI GKGCMC 2 cut(s) 177, 300
BsiHKAI GWGCWC 3 cut(s) 177, 202, 300
BsiSI CCGG 1 cut(s) 326
BslFI GGGAC 1 cut(s) 238
BslI CCNNNNNNNGG 2 cut(s) 42, 392
BsmAI GTCTC 1 cut(s) 201
BsmFI GGGAC 1 cut(s) 238
Bso31I GGTCTC 1 cut(s) 201
Bsp1286I GDGCHC 5 cut(s) 56, 177, 202, 300, 326
Bsp143I GATC 2 cut(s) 39, 81
BspTI CTTAAG 1 cut(s) 338
BspTNI GGTCTC 1 cut(s) 201
BsrI ACTGG 1 cut(s) 386
BssMI GATC 2 cut(s) 39, 81
BssNI GRCGYC 1 cut(s) 334
Bst2UI CCWGG 1 cut(s) 352
Bst4CI ACNGT 3 cut(s) 97, 118, 302
BstACI GRCGYC 1 cut(s) 334
BstAFI CTTAAG 1 cut(s) 338
BstDEI CTNAG 2 cut(s) 146, 194
BstKTI GATC 2 cut(s) 42, 84
BstMAI GTCTC 1 cut(s) 201
BstMBI GATC 2 cut(s) 39, 81
BstNI CCWGG 1 cut(s) 352
BstSCI CCNGG 2 cut(s) 324, 350
BstSLI GKGCMC 2 cut(s) 177, 300
BstV2I GAAGAC 2 cut(s) 26, 38
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 101
CseI GACGC 1 cut(s) 342
CviAII CATG 2 cut(s) 79, 421
CviJI RGCY 6 cut(s) 54, 180, 274, 287, 324, 416
CviKI_1 RGCY 6 cut(s) 54, 180, 274, 287, 324, 416
DdeI CTNAG 2 cut(s) 146, 194
DpnI GATC 2 cut(s) 41, 83
DpnII GATC 2 cut(s) 39, 81
DraI TTTAAA 1 cut(s) 318
Eco24I GRGCYC 2 cut(s) 56, 326
Eco31I GGTCTC 1 cut(s) 201
Eco47I GGWCC 1 cut(s) 101
Eco57I CTGAAG 1 cut(s) 309
EcoRI GAATTC 1 cut(s) 128
EcoRII CCWGG 1 cut(s) 350
EcoT38I GRGCYC 2 cut(s) 56, 326
FaeI CATG 2 cut(s) 82, 424
FaiI YATR 7 cut(s) 80, 107, 186, 213, 258, 422, 448
FaqI GGGAC 1 cut(s) 238
FatI CATG 2 cut(s) 78, 420
FriOI GRGCYC 2 cut(s) 56, 326
FspBI CTAG 2 cut(s) 381, 440
GsuI CTGGAG 1 cut(s) 373
HapII CCGG 1 cut(s) 326
HgaI GACGC 1 cut(s) 342
Hin1I GRCGYC 1 cut(s) 334
Hin1II CATG 2 cut(s) 82, 424
HinfI GANTC 3 cut(s) 74, 142, 190
HpaII CCGG 1 cut(s) 326
Hpy166II GTNNAC 2 cut(s) 175, 298
Hpy188I TCNGA 1 cut(s) 307
Hpy188III TCNNGA 2 cut(s) 13, 112
Hpy8I GTNNAC 2 cut(s) 175, 298
Hpy99I CGWCG 3 cut(s) 28, 31, 336
HpyAV CCTTC 1 cut(s) 284
HpyCH4III ACNGT 3 cut(s) 97, 118, 302
HpyCH4V TGCA 4 cut(s) 175, 218, 298, 435
HpyF3I CTNAG 2 cut(s) 146, 194
Hsp92I GRCGYC 1 cut(s) 334
Hsp92II CATG 2 cut(s) 82, 424
Kzo9I GATC 2 cut(s) 39, 81
LmnI GCTCC 1 cut(s) 328
LpnPI CCDG 9 cut(s) 28, 97, 101, 166, 260, 337, 339, 364, 399
LweI GCATC 1 cut(s) 298
MaeI CTAG 2 cut(s) 381, 440
MaeIII GTNAC 1 cut(s) 442
MalI GATC 2 cut(s) 41, 83
MboI GATC 2 cut(s) 39, 81
MboII GAAGA 6 cut(s) 28, 31, 43, 355, 367, 396
MfeI CAATTG 1 cut(s) 219
MflI RGATCY 1 cut(s) 39
MhlI GDGCHC 5 cut(s) 56, 177, 202, 300, 326
MluCI AATT 2 cut(s) 128, 219
MlyI GAGTC 2 cut(s) 151, 199
MnlI CCTC 5 cut(s) 20, 40, 43, 132, 148
MseI TTAA 3 cut(s) 68, 317, 339
MspCI CTTAAG 1 cut(s) 338
MspI CCGG 1 cut(s) 326
MspR9I CCNGG 2 cut(s) 326, 352
MunI CAATTG 1 cut(s) 219
MvaI CCWGG 1 cut(s) 352
NciI CCSGG 1 cut(s) 326
NdeII GATC 2 cut(s) 39, 81
NlaIII CATG 2 cut(s) 82, 424
PfeI GAWTC 1 cut(s) 74
PflMI CCANNNNNTGG 2 cut(s) 42, 392
PleI GAGTC 2 cut(s) 150, 198
PpsI GAGTC 2 cut(s) 150, 198
Psp6I CCWGG 1 cut(s) 350
PspGI CCWGG 1 cut(s) 350
PspPI GGNCC 1 cut(s) 101
PsuI RGATCY 1 cut(s) 39
SaqAI TTAA 3 cut(s) 68, 317, 339
Sau3AI GATC 2 cut(s) 39, 81
Sau96I GGNCC 1 cut(s) 101
SchI GAGTC 2 cut(s) 151, 199
ScrFI CCNGG 2 cut(s) 326, 352
SduI GDGCHC 5 cut(s) 56, 177, 202, 300, 326
SetI ASST 5 cut(s) 12, 276, 353, 402, 418
SfaNI GCATC 1 cut(s) 298
SinI GGWCC 1 cut(s) 101
SmlI CTYRAG 2 cut(s) 57, 338
SmoI CTYRAG 2 cut(s) 57, 338
SpeI ACTAGT 2 cut(s) 380, 439
Sse9I AATT 2 cut(s) 128, 219
SspMI CTAG 2 cut(s) 381, 440
StyD4I CCNGG 2 cut(s) 324, 350
TaaI ACNGT 3 cut(s) 97, 118, 302
TaqI TCGA 1 cut(s) 72
TasI AATT 2 cut(s) 128, 219
TfiI GAWTC 1 cut(s) 74
Tru1I TTAA 3 cut(s) 68, 317, 339
Tru9I TTAA 3 cut(s) 68, 317, 339
TspDTI ATGAA 3 cut(s) 20, 245, 354
Van91I CCANNNNNTGG 2 cut(s) 42, 392
Vha464I CTTAAG 1 cut(s) 338
VneI GTGCAC 2 cut(s) 173, 296
VpaK11BI GGWCC 1 cut(s) 101
XapI RAATTY 1 cut(s) 128
XcmI CCANNNNNNNNNTGG 2 cut(s) 95, 218
XspI CTAG 2 cut(s) 381, 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.