Rmu_sc0001608.1_g000009

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001608.1
Physical Location & Seq
Reverse (-)
58660 .. 58974
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001608.1_g000009.1.cds

Sequence Viewer

Length: 315 bp
atgattactacgatcaatattgctctcctttgtgccaatacttcttcagcagttagacctgccatgtcttcagtggtaagcatgcttgaaggtaagtcttctgttcaagaggtggtctttgatccaaacgcctcaattaatgaaatcaatgcgatgaggaaacattttcaatccaatattgaagaaaacaatggtgaccctgagagtcagaaacaaactatgtcgattgaagggtcgtggactgcttcatctacatctgctcaagacctctatccagtccgccctgattcatattattgggagaatagaaattag

Protein Analysis

104

Amino Acids

11.52

Weight (kDa)

4.64

Isoelectric Point (pI)

69.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000292)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53420 AT3G14840
fragaria_vesca FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17851
malus_domestica MD03G1246600.v1.1 MD06G1045200.v1.1 MD06G1045400.v1.1 MD11G1267800.v1.1 MD11G1267900.v1.1 MD11G1268100.v1.1 MD11G1268300.v1.1 MD11G1268500.v1.1 MD11G1268600.v1.1
prunus_persica Prupe.4G157700_v2.0.a1 Prupe.4G157700_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1
pyrus_communis pycom03g19540 pycom11g23600 pycom11g23630 pycom11g23690 pycom11g23720 pycom11g23730 pycom11g23740 pycom11g23750
rosa_chinensis RchiOBHm_Chr0c40g0503411 RchiOBHm_Chr0c40g0503421 RchiOBHm_Chr5g0029631 RchiOBHm_Chr5g0029661 RchiOBHm_Chr5g0029701 RchiOBHm_Chr5g0029741 RchiOBHm_Chr5g0029771 RchiOBHm_Chr5g0029781 RchiOBHm_Chr5g0029811 RchiOBHm_Chr5g0029851 RchiOBHm_Chr5g0029871 RchiOBHm_Chr5g0029891 RchiOBHm_Chr7g0222221
rosa_laevigata RLG00000017380 RLG00000032873 RLG00000033188 RLG00000033190 RLG00000033192 RLG00000033193 RLG00000033194 RLG00000033196 RLG00000033199 RLG00000033238
rosa_multiflora Rmu_co8359987.1_g000001 Rmu_co8444909.1_g000001 Rmu_sc0001608.1_g000007 Rmu_sc0001608.1_g000009 Rmu_sc0001608.1_g000013 Rmu_sc0001608.1_g000018 Rmu_sc0001608.1_g000023 Rmu_sc0001608.1_g000040 Rmu_sc0003238.1_g000016 Rmu_sc0003368.1_g000026 Rmu_sc0003368.1_g000034 Rmu_sc0003368.1_g000043 Rmu_sc0003368.1_g000047 Rmu_sc0003368.1_g000052 Rmu_sc0003368.1_g000054 Rmu_sc0004963.1_g000001
rosa_roxburghii Rroxscaffold_1G00050080 Rroxscaffold_1G00050090 Rroxscaffold_1G00050110 Rroxscaffold_1G00050120 Rroxscaffold_1G00050180 Rroxscaffold_1G00050190 Rroxscaffold_1G00050220 Rroxscaffold_1G00050270 Rroxscaffold_1G00050300
rosa_rugosa Rorug04G0065200 Rorug05G0114900 Rorug05G0115000 Rorug05G0115100 Rorug05G0120100 Rorug05G0238900
rosa_samantha Rh5AG207800 Rh5AG208000 Rh5AG208300 Rh5AG208400 Rh5AG208800 Rh5AG294900 Rh5AG295000 Rh5AG295400 Rh5CG230400 Rh7AG347800
rosa_wichuraiana Rw0G005370 Rw0G012460 Rw0G019060 Rw5G018910 Rw5G018920 Rw5G018930 Rw5G018940 Rw5G018960 Rw5G018970 Rw5G018980 Rw5G018990 Rw5G019000 Rw7G029840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 67
AciI CCGC 1 cut(s) 280
AclWI GGATC 1 cut(s) 116
AcuI CTGAAG 2 cut(s) 30, 54
AgsI TTSAA 5 cut(s) 89, 107, 170, 182, 230
AlwI GGATC 1 cut(s) 116
AseI ATTAAT 1 cut(s) 138
AsuHPI GGTGA 1 cut(s) 206
BbsI GAAGAC 2 cut(s) 60, 90
BfuAI ACCTGC 1 cut(s) 67
BpiI GAAGAC 2 cut(s) 60, 90
BpuEI CTTGAG 1 cut(s) 246
Bse1I ACTGG 1 cut(s) 275
BseMII CTCAG 1 cut(s) 192
BseNI ACTGG 1 cut(s) 275
Bsp143I GATC 2 cut(s) 12, 121
BspACI CCGC 1 cut(s) 280
BspCNI CTCAG 1 cut(s) 193
BspMI ACCTGC 1 cut(s) 67
BspPI GGATC 1 cut(s) 116
BsrI ACTGG 1 cut(s) 275
BssMI GATC 2 cut(s) 12, 121
BstC8I GCNNGC 1 cut(s) 83
BstDEI CTNAG 1 cut(s) 201
BstEII GGTNACC 1 cut(s) 194
BstKTI GATC 2 cut(s) 15, 124
BstMBI GATC 2 cut(s) 12, 121
BstNSI RCATGY 1 cut(s) 85
BstPI GGTNACC 1 cut(s) 194
BstV2I GAAGAC 2 cut(s) 60, 90
BtgZI GCGATG 1 cut(s) 167
BtsIMutI CAGTG 1 cut(s) 78
BveI ACCTGC 1 cut(s) 67
Cac8I GCNNGC 1 cut(s) 83
CviAII CATG 2 cut(s) 64, 82
DdeI CTNAG 1 cut(s) 201
DpnI GATC 2 cut(s) 14, 123
DpnII GATC 2 cut(s) 12, 121
EciI GGCGGA 1 cut(s) 269
Eco57I CTGAAG 2 cut(s) 30, 54
Eco91I GGTNACC 1 cut(s) 194
EcoO65I GGTNACC 1 cut(s) 194
FaeI CATG 2 cut(s) 67, 85
FaiI YATR 4 cut(s) 65, 83, 221, 292
FatI CATG 2 cut(s) 63, 81
Hin1II CATG 2 cut(s) 67, 85
HinfI GANTC 2 cut(s) 205, 287
HphI GGTGA 1 cut(s) 206
Hpy166II GTNNAC 1 cut(s) 240
Hpy188I TCNGA 1 cut(s) 210
Hpy188III TCNNGA 2 cut(s) 107, 263
Hpy8I GTNNAC 1 cut(s) 240
HpyAV CCTTC 2 cut(s) 83, 224
HpyF3I CTNAG 1 cut(s) 201
Hsp92II CATG 2 cut(s) 67, 85
Kzo9I GATC 2 cut(s) 12, 121
LpnPI CCDG 4 cut(s) 72, 213, 288, 297
MaeIII GTNAC 1 cut(s) 194
MalI GATC 2 cut(s) 14, 123
MboI GATC 2 cut(s) 12, 121
MboII GAAGA 4 cut(s) 36, 60, 90, 194
MluCI AATT 2 cut(s) 135, 310
MlyI GAGTC 1 cut(s) 214
MnlI CCTC 4 cut(s) 103, 142, 150, 278
MseI TTAA 1 cut(s) 138
NdeII GATC 2 cut(s) 12, 121
NlaIII CATG 2 cut(s) 67, 85
NmuCI GTSAC 1 cut(s) 194
NspI RCATGY 1 cut(s) 85
PaeI GCATGC 1 cut(s) 85
PfeI GAWTC 1 cut(s) 287
PleI GAGTC 1 cut(s) 213
PpsI GAGTC 1 cut(s) 213
PshBI ATTAAT 1 cut(s) 138
PspEI GGTNACC 1 cut(s) 194
SaqAI TTAA 1 cut(s) 138
Sau3AI GATC 2 cut(s) 12, 121
SchI GAGTC 1 cut(s) 214
SetI ASST 4 cut(s) 61, 94, 114, 270
SmlI CTYRAG 1 cut(s) 261
SmoI CTYRAG 1 cut(s) 261
SphI GCATGC 1 cut(s) 85
Sse9I AATT 2 cut(s) 135, 310
SsiI CCGC 1 cut(s) 280
SspI AATATT 2 cut(s) 19, 178
TaqI TCGA 1 cut(s) 224
TasI AATT 2 cut(s) 135, 310
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TscAI CASTG 1 cut(s) 78
TseFI GTSAC 1 cut(s) 194
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 3 cut(s) 156, 237, 279
TspRI CASTG 1 cut(s) 78
VspI ATTAAT 1 cut(s) 138
XceI RCATGY 1 cut(s) 85
XcmI CCANNNNNNNNNTGG 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.