MD06G1045200.v1.1

leucine-rich repeat receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Forward (+)
6138594 .. 6140587
1994 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1045200.v1.1.491

Sequence Viewer

Length: 387 bp
ATGAGCACATCTTCTCAAATCGGAAAGGAAATTGATGAACCTAGTGGATCCAAGATTTGTTTTAACTATCTTAGTCAAATGCAATGCATCCTGACAAATGAAAATATGATAGCTATTAAGCAACTTTCTTCCAAATCAAAGCAAGGAAATTGTGAATTTGTGAATGAGATATGTATCATTTTTGCTTTGCAACACCCACATCTTGTAAACCTATACGGATGTTGTATTAAAGGAAATCAATTATACCTTGTTTACAAGTACATGGAAAACAATAATGTTTCCCATGCTTTATTTAGTAAGCATCATTTTTGTATGCCTACATTTTCTTTGGTCCATGCATATGGTATAAGCAATTTTGTGGCCCAAATTATGACTGATTTTGATTAA

Protein Analysis

129

Amino Acids

14.54

Weight (kDa)

6.57

Isoelectric Point (pI)

31.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 29 - 102 5.8e-09 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 32 - 101 2e-12 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000292)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53420 AT3G14840
fragaria_vesca FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17851
malus_domestica MD03G1246600.v1.1 MD06G1045200.v1.1 MD06G1045400.v1.1 MD11G1267800.v1.1 MD11G1267900.v1.1 MD11G1268100.v1.1 MD11G1268300.v1.1 MD11G1268500.v1.1 MD11G1268600.v1.1
prunus_persica Prupe.4G157700_v2.0.a1 Prupe.4G157700_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1
pyrus_communis pycom03g19540 pycom11g23600 pycom11g23630 pycom11g23690 pycom11g23720 pycom11g23730 pycom11g23740 pycom11g23750
rosa_chinensis RchiOBHm_Chr0c40g0503411 RchiOBHm_Chr0c40g0503421 RchiOBHm_Chr5g0029631 RchiOBHm_Chr5g0029661 RchiOBHm_Chr5g0029701 RchiOBHm_Chr5g0029741 RchiOBHm_Chr5g0029771 RchiOBHm_Chr5g0029781 RchiOBHm_Chr5g0029811 RchiOBHm_Chr5g0029851 RchiOBHm_Chr5g0029871 RchiOBHm_Chr5g0029891 RchiOBHm_Chr7g0222221
rosa_laevigata RLG00000017380 RLG00000032873 RLG00000033188 RLG00000033190 RLG00000033192 RLG00000033193 RLG00000033194 RLG00000033196 RLG00000033199 RLG00000033238
rosa_multiflora Rmu_co8359987.1_g000001 Rmu_co8444909.1_g000001 Rmu_sc0001608.1_g000007 Rmu_sc0001608.1_g000009 Rmu_sc0001608.1_g000013 Rmu_sc0001608.1_g000018 Rmu_sc0001608.1_g000023 Rmu_sc0001608.1_g000040 Rmu_sc0003238.1_g000016 Rmu_sc0003368.1_g000026 Rmu_sc0003368.1_g000034 Rmu_sc0003368.1_g000043 Rmu_sc0003368.1_g000047 Rmu_sc0003368.1_g000052 Rmu_sc0003368.1_g000054 Rmu_sc0004963.1_g000001
rosa_roxburghii Rroxscaffold_1G00050080 Rroxscaffold_1G00050090 Rroxscaffold_1G00050110 Rroxscaffold_1G00050120 Rroxscaffold_1G00050180 Rroxscaffold_1G00050190 Rroxscaffold_1G00050220 Rroxscaffold_1G00050270 Rroxscaffold_1G00050300
rosa_rugosa Rorug04G0065200 Rorug05G0114900 Rorug05G0115000 Rorug05G0115100 Rorug05G0120100 Rorug05G0238900
rosa_samantha Rh5AG207800 Rh5AG208000 Rh5AG208300 Rh5AG208400 Rh5AG208800 Rh5AG294900 Rh5AG295000 Rh5AG295400 Rh5CG230400 Rh7AG347800
rosa_wichuraiana Rw0G005370 Rw0G012460 Rw0G019060 Rw5G018910 Rw5G018920 Rw5G018930 Rw5G018940 Rw5G018960 Rw5G018970 Rw5G018980 Rw5G018990 Rw5G019000 Rw7G029840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 42, 55
AcsI RAATTY 1 cut(s) 155
AfaI GTAC 1 cut(s) 260
AluBI AGCT 1 cut(s) 113
AluI AGCT 1 cut(s) 113
Alw21I GWGCWC 1 cut(s) 8
AlwI GGATC 2 cut(s) 42, 55
AoxI GGCC 1 cut(s) 360
ApoI RAATTY 1 cut(s) 155
AspS9I GGNCC 2 cut(s) 331, 361
AvaII GGWCC 1 cut(s) 331
BamHI GGATCC 1 cut(s) 47
Bbv12I GWGCWC 1 cut(s) 8
BfaI CTAG 1 cut(s) 42
Bme18I GGWCC 1 cut(s) 331
BmgT120I GGNCC 2 cut(s) 331, 361
BmiI GGNNCC 1 cut(s) 49
BmsI GCATC 2 cut(s) 96, 310
BsaBI GATNNNNATC 1 cut(s) 173
Bse3DI GCAATG 1 cut(s) 89
Bse8I GATNNNNATC 1 cut(s) 173
BseGI GGATG 2 cut(s) 87, 224
BseJI GATNNNNATC 1 cut(s) 173
BseMI GCAATG 1 cut(s) 89
BshFI GGCC 1 cut(s) 362
BsiHKAI GWGCWC 1 cut(s) 8
BsnI GGCC 1 cut(s) 362
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 1 cut(s) 47
BspANI GGCC 1 cut(s) 362
BspLI GGNNCC 1 cut(s) 49
BspPI GGATC 2 cut(s) 42, 55
BsrDI GCAATG 1 cut(s) 89
BssMI GATC 1 cut(s) 47
BstDEI CTNAG 1 cut(s) 71
BstF5I GGATG 2 cut(s) 87, 224
BstKTI GATC 1 cut(s) 50
BstMBI GATC 1 cut(s) 47
BstX2I RGATCY 1 cut(s) 47
BstXI CCANNNNNNTGG 1 cut(s) 341
BstYI RGATCY 1 cut(s) 47
BsuRI GGCC 1 cut(s) 362
BtsCI GGATG 2 cut(s) 87, 224
Cfr13I GGNCC 2 cut(s) 331, 361
Csp6I GTAC 1 cut(s) 259
CviAII CATG 3 cut(s) 262, 284, 335
CviJI RGCY 2 cut(s) 113, 362
CviKI_1 RGCY 2 cut(s) 113, 362
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 1 cut(s) 71
DpnI GATC 1 cut(s) 49
DpnII GATC 1 cut(s) 47
Eco47I GGWCC 1 cut(s) 331
EcoT22I ATGCAT 2 cut(s) 89, 340
FaeI CATG 3 cut(s) 265, 287, 338
FatI CATG 3 cut(s) 261, 283, 334
FauNDI CATATG 1 cut(s) 340
FokI GGATG 2 cut(s) 74, 231
FspBI CTAG 1 cut(s) 42
HaeIII GGCC 1 cut(s) 362
Hin1II CATG 3 cut(s) 265, 287, 338
Hpy166II GTNNAC 2 cut(s) 208, 253
Hpy188I TCNGA 1 cut(s) 23
Hpy188III TCNNGA 1 cut(s) 91
Hpy8I GTNNAC 2 cut(s) 208, 253
HpyCH4V TGCA 4 cut(s) 82, 87, 190, 338
HpyF3I CTNAG 1 cut(s) 71
Hsp92II CATG 3 cut(s) 265, 287, 338
Kzo9I GATC 1 cut(s) 47
LpnPI CCDG 1 cut(s) 104
LweI GCATC 2 cut(s) 96, 310
MaeI CTAG 1 cut(s) 42
MalI GATC 1 cut(s) 49
MboI GATC 1 cut(s) 47
MboII GAAGA 2 cut(s) 3, 120
MflI RGATCY 1 cut(s) 47
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 6 cut(s) 30, 148, 155, 239, 352, 366
Mph1103I ATGCAT 2 cut(s) 89, 340
MseI TTAA 4 cut(s) 63, 117, 228, 385
MslI CAYNNNNRTG 1 cut(s) 339
NdeI CATATG 1 cut(s) 340
NdeII GATC 1 cut(s) 47
NlaIII CATG 3 cut(s) 265, 287, 338
NlaIV GGNNCC 1 cut(s) 49
NsiI ATGCAT 2 cut(s) 89, 340
PspN4I GGNNCC 1 cut(s) 49
PspPI GGNCC 2 cut(s) 331, 361
PsuI RGATCY 1 cut(s) 47
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
RseI CAYNNNNRTG 1 cut(s) 339
SaqAI TTAA 4 cut(s) 63, 117, 228, 385
Sau3AI GATC 1 cut(s) 47
Sau96I GGNCC 2 cut(s) 331, 361
SduI GDGCHC 1 cut(s) 8
SetI ASST 4 cut(s) 43, 115, 213, 249
SfaNI GCATC 2 cut(s) 96, 310
SinI GGWCC 1 cut(s) 331
SmiMI CAYNNNNRTG 1 cut(s) 339
Sse9I AATT 6 cut(s) 30, 148, 155, 239, 352, 366
SspMI CTAG 1 cut(s) 42
TasI AATT 6 cut(s) 30, 148, 155, 239, 352, 366
TatI WGTACW 1 cut(s) 258
Tru1I TTAA 4 cut(s) 63, 117, 228, 385
Tru9I TTAA 4 cut(s) 63, 117, 228, 385
TspDTI ATGAA 2 cut(s) 51, 114
TspGWI ACGGA 1 cut(s) 231
VpaK11BI GGWCC 1 cut(s) 331
XapI RAATTY 1 cut(s) 155
XspI CTAG 1 cut(s) 42
Zsp2I ATGCAT 2 cut(s) 89, 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.