Rh5AG295400

leucine-rich repeat receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
41094016 .. 41095234
1219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG295400.1

Sequence Viewer

Length: 588 bp
ATGATTTCTGCTTTGCAACACCCTCATCTTGTCAAGCTCTATGGATGCTGCATTGAACGAAATCAATTGTTCCTTGTCTATGAGTACCTGGAAAATAATAGTCTTGCACGTGCTTTGTTTGGCCCAGAAGAAAGTCAGTTGAAGTTAGATTGGCCAACAAGGCACCCTATCTGTGTCGGTATTGCAAGAGCCAAGCTTGATGAAGATGAAAATACCCACATAAGCACCCGGATTGCTGGAACTTATGGATATATGGCACCTGAATATGCGATGCATGGCTATCTAACTGATAAAGCCGATGTTTATAGTTTTGGAATTGTTGTACTGGAAATTGTTAGTGGGACGAGCAATACAACTTACCGGACAAAGGAAGAATGCTTTTTTCTTCTTGATTGGGCACTTCTTCTAAAAGAGAAAGGGAACATACTGGAACTAGTTGATCCAAGGTTGGGCTCAGACTTTAACAAAGAAGAAATGATGATCACAATCAATGTGGCTCTTCTTTGCACTAATGTCATTGCAGCAGATAGGCCTACGATGTCTTCAGTGGTGAGCATGCTTGAAGGCAAGGCTTCTGTGTTAGTGTGA

Protein Analysis

195

Amino Acids

21.91

Weight (kDa)

5.11

Isoelectric Point (pI)

31.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 2 - 62 1.6e-06 Protein tyrosine and serine/threonine kinase
PK_Tyr_Ser-Thr PF07714 60 - 126 1.6e-08 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 71 - 119 3.5e-07 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000292)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53420 AT3G14840
fragaria_vesca FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17851
malus_domestica MD03G1246600.v1.1 MD06G1045200.v1.1 MD06G1045400.v1.1 MD11G1267800.v1.1 MD11G1267900.v1.1 MD11G1268100.v1.1 MD11G1268300.v1.1 MD11G1268500.v1.1 MD11G1268600.v1.1
prunus_persica Prupe.4G157700_v2.0.a1 Prupe.4G157700_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1
pyrus_communis pycom03g19540 pycom11g23600 pycom11g23630 pycom11g23690 pycom11g23720 pycom11g23730 pycom11g23740 pycom11g23750
rosa_chinensis RchiOBHm_Chr0c40g0503411 RchiOBHm_Chr0c40g0503421 RchiOBHm_Chr5g0029631 RchiOBHm_Chr5g0029661 RchiOBHm_Chr5g0029701 RchiOBHm_Chr5g0029741 RchiOBHm_Chr5g0029771 RchiOBHm_Chr5g0029781 RchiOBHm_Chr5g0029811 RchiOBHm_Chr5g0029851 RchiOBHm_Chr5g0029871 RchiOBHm_Chr5g0029891 RchiOBHm_Chr7g0222221
rosa_laevigata RLG00000017380 RLG00000032873 RLG00000033188 RLG00000033190 RLG00000033192 RLG00000033193 RLG00000033194 RLG00000033196 RLG00000033199 RLG00000033238
rosa_multiflora Rmu_co8359987.1_g000001 Rmu_co8444909.1_g000001 Rmu_sc0001608.1_g000007 Rmu_sc0001608.1_g000009 Rmu_sc0001608.1_g000013 Rmu_sc0001608.1_g000018 Rmu_sc0001608.1_g000023 Rmu_sc0001608.1_g000040 Rmu_sc0003238.1_g000016 Rmu_sc0003368.1_g000026 Rmu_sc0003368.1_g000034 Rmu_sc0003368.1_g000043 Rmu_sc0003368.1_g000047 Rmu_sc0003368.1_g000052 Rmu_sc0003368.1_g000054 Rmu_sc0004963.1_g000001
rosa_roxburghii Rroxscaffold_1G00050080 Rroxscaffold_1G00050090 Rroxscaffold_1G00050110 Rroxscaffold_1G00050120 Rroxscaffold_1G00050180 Rroxscaffold_1G00050190 Rroxscaffold_1G00050220 Rroxscaffold_1G00050270 Rroxscaffold_1G00050300
rosa_rugosa Rorug04G0065200 Rorug05G0114900 Rorug05G0115000 Rorug05G0115100 Rorug05G0120100 Rorug05G0238900
rosa_samantha Rh5AG207800 Rh5AG208000 Rh5AG208300 Rh5AG208400 Rh5AG208800 Rh5AG294900 Rh5AG295000 Rh5AG295400 Rh5CG230400 Rh7AG347800
rosa_wichuraiana Rw0G005370 Rw0G012460 Rw0G019060 Rw5G018910 Rw5G018920 Rw5G018930 Rw5G018940 Rw5G018960 Rw5G018970 Rw5G018980 Rw5G018990 Rw5G019000 Rw7G029840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 162, 256
AclWI GGATC 1 cut(s) 434
AcoI YGGCCR 1 cut(s) 152
AcuI CTGAAG 1 cut(s) 528
AcvI CACGTG 1 cut(s) 110
AfaI GTAC 2 cut(s) 86, 324
AfiI CCNNNNNNNGG 2 cut(s) 367, 449
AgsI TTSAA 3 cut(s) 56, 142, 563
AhlI ACTAGT 1 cut(s) 433
AjnI CCWGG 1 cut(s) 87
AluBI AGCT 2 cut(s) 37, 196
AluI AGCT 2 cut(s) 37, 196
AlwI GGATC 1 cut(s) 434
AoxI GGCC 3 cut(s) 121, 152, 530
ApeKI GCWGC 2 cut(s) 48, 521
AspS9I GGNCC 1 cut(s) 122
AsuC2I CCSGG 1 cut(s) 229
AsuHPI GGTGA 1 cut(s) 562
BaeGI GKGCMC 1 cut(s) 400
BalI TGGCCA 1 cut(s) 154
BanI GGYRCC 2 cut(s) 162, 256
BanII GRGCYC 1 cut(s) 455
BbrPI CACGTG 1 cut(s) 110
BbsI GAAGAC 1 cut(s) 534
BbvI GCAGC 2 cut(s) 35, 533
BciT130I CCWGG 1 cut(s) 89
BclI TGATCA 1 cut(s) 480
BcnI CCSGG 1 cut(s) 229
BcuI ACTAGT 1 cut(s) 433
BfaI CTAG 1 cut(s) 434
BglI GCCNNNNNGGC 1 cut(s) 160
BisI GCNGC 2 cut(s) 49, 522
BlsI GCNGC 2 cut(s) 50, 523
Bme1390I CCNGG 2 cut(s) 89, 229
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 2 cut(s) 164, 258
BmrFI CCNGG 2 cut(s) 89, 229
BmsI GCATC 2 cut(s) 35, 261
BpiI GAAGAC 1 cut(s) 534
BpuMI CCSGG 1 cut(s) 229
BsaAI YACGTR 1 cut(s) 110
BsaBI GATNNNNATC 1 cut(s) 485
BsaJI CCNNGG 1 cut(s) 443
BsaWI WCCGGW 1 cut(s) 360
Bsc4I CCNNNNNNNGG 2 cut(s) 367, 449
Bse1I ACTGG 2 cut(s) 330, 432
Bse3DI GCAATG 1 cut(s) 516
Bse8I GATNNNNATC 1 cut(s) 485
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 443
BseGI GGATG 1 cut(s) 50
BseJI GATNNNNATC 1 cut(s) 485
BseLI CCNNNNNNNGG 2 cut(s) 367, 449
BseMI GCAATG 1 cut(s) 516
BseMII CTCAG 1 cut(s) 468
BseNI ACTGG 2 cut(s) 330, 432
BseSI GKGCMC 1 cut(s) 400
BseXI GCAGC 2 cut(s) 35, 533
BshFI GGCC 3 cut(s) 123, 154, 532
BshNI GGYRCC 2 cut(s) 162, 256
BsiSI CCGG 2 cut(s) 229, 361
BslFI GGGAC 1 cut(s) 355
BslI CCNNNNNNNGG 2 cut(s) 367, 449
BsmFI GGGAC 1 cut(s) 355
BsmI GAATGC 1 cut(s) 380
BsnI GGCC 3 cut(s) 123, 154, 532
Bsp1286I GDGCHC 2 cut(s) 400, 455
Bsp143I GATC 2 cut(s) 439, 480
BspANI GGCC 3 cut(s) 123, 154, 532
BspCNI CTCAG 1 cut(s) 467
BspLI GGNNCC 2 cut(s) 164, 258
BspPI GGATC 1 cut(s) 434
BspQI GCTCTTC 1 cut(s) 504
BspT107I GGYRCC 2 cut(s) 162, 256
BsrDI GCAATG 1 cut(s) 516
BsrI ACTGG 2 cut(s) 330, 432
BssECI CCNNGG 1 cut(s) 443
BssMI GATC 2 cut(s) 439, 480
BssT1I CCWWGG 1 cut(s) 443
Bst2UI CCWGG 1 cut(s) 89
Bst6I CTCTTC 1 cut(s) 504
BstBAI YACGTR 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 557
BstDEI CTNAG 1 cut(s) 454
BstF5I GGATG 1 cut(s) 50
BstKTI GATC 2 cut(s) 442, 483
BstMBI GATC 2 cut(s) 439, 480
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstNI CCWGG 1 cut(s) 89
BstNSI RCATGY 1 cut(s) 559
BstSCI CCNGG 2 cut(s) 87, 227
BstSLI GKGCMC 1 cut(s) 400
BstV1I GCAGC 2 cut(s) 35, 533
BstV2I GAAGAC 1 cut(s) 534
BsuRI GGCC 3 cut(s) 123, 154, 532
BtgZI GCGATG 1 cut(s) 284
BtsCI GGATG 1 cut(s) 50
BtsIMutI CAGTG 1 cut(s) 552
Cac8I GCNNGC 1 cut(s) 557
Cfr13I GGNCC 1 cut(s) 122
Csp6I GTAC 2 cut(s) 85, 323
CspCI CAANNNNNGTGG 2 cut(s) 474, 509
CviAII CATG 2 cut(s) 275, 556
CviQI GTAC 2 cut(s) 85, 323
DdeI CTNAG 1 cut(s) 454
DpnI GATC 2 cut(s) 441, 482
DpnII GATC 2 cut(s) 439, 480
EaeI YGGCCR 1 cut(s) 152
Eam1104I CTCTTC 1 cut(s) 504
EarI CTCTTC 1 cut(s) 504
Eco130I CCWWGG 1 cut(s) 443
Eco147I AGGCCT 1 cut(s) 532
Eco24I GRGCYC 1 cut(s) 455
Eco57I CTGAAG 1 cut(s) 528
Eco72I CACGTG 1 cut(s) 110
EcoRII CCWGG 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 443
EcoT22I ATGCAT 1 cut(s) 276
EcoT38I GRGCYC 1 cut(s) 455
ErhI CCWWGG 1 cut(s) 443
FaeI CATG 2 cut(s) 278, 559
FaqI GGGAC 1 cut(s) 355
FatI CATG 2 cut(s) 274, 555
FbaI TGATCA 1 cut(s) 480
Fnu4HI GCNGC 2 cut(s) 49, 522
FokI GGATG 1 cut(s) 57
FriOI GRGCYC 1 cut(s) 455
Fsp4HI GCNGC 2 cut(s) 49, 522
FspBI CTAG 1 cut(s) 434
GluI GCNGC 2 cut(s) 49, 522
HaeIII GGCC 3 cut(s) 123, 154, 532
HapII CCGG 2 cut(s) 229, 361
Hin1II CATG 2 cut(s) 278, 559
HindIII AAGCTT 1 cut(s) 194
HpaII CCGG 2 cut(s) 229, 361
HphI GGTGA 1 cut(s) 562
Hpy188I TCNGA 1 cut(s) 457
Hpy188III TCNNGA 1 cut(s) 389
HpyAV CCTTC 1 cut(s) 557
HpyCH4IV ACGT 1 cut(s) 109
HpyCH4V TGCA 7 cut(s) 16, 51, 107, 185, 274, 507, 521
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
HpyF3I CTNAG 1 cut(s) 454
HpySE526I ACGT 1 cut(s) 109
Hsp92II CATG 2 cut(s) 278, 559
Ksp22I TGATCA 1 cut(s) 480
Kzo9I GATC 2 cut(s) 439, 480
LguI GCTCTTC 1 cut(s) 504
LpnPI CCDG 9 cut(s) 74, 101, 138, 222, 242, 273, 311, 374, 413
Lsp1109I GCAGC 2 cut(s) 35, 533
LweI GCATC 2 cut(s) 35, 261
MaeI CTAG 1 cut(s) 434
MaeII ACGT 1 cut(s) 109
MalI GATC 2 cut(s) 441, 482
MboI GATC 2 cut(s) 439, 480
MboII GAAGA 8 cut(s) 140, 215, 377, 383, 395, 482, 491, 534
MfeI CAATTG 1 cut(s) 65
MhlI GDGCHC 2 cut(s) 400, 455
MlsI TGGCCA 1 cut(s) 154
MluCI AATT 3 cut(s) 65, 315, 330
MluNI TGGCCA 1 cut(s) 154
MnlI CCTC 1 cut(s) 33
Mox20I TGGCCA 1 cut(s) 154
Mph1103I ATGCAT 1 cut(s) 276
MscI TGGCCA 1 cut(s) 154
MseI TTAA 1 cut(s) 462
Msp20I TGGCCA 1 cut(s) 154
MspI CCGG 2 cut(s) 229, 361
MspR9I CCNGG 2 cut(s) 89, 229
MunI CAATTG 1 cut(s) 65
Mva1269I GAATGC 1 cut(s) 380
MvaI CCWGG 1 cut(s) 89
MwoI GCNNNNNNNGC 1 cut(s) 160
NciI CCSGG 1 cut(s) 229
NdeII GATC 2 cut(s) 439, 480
NlaIII CATG 2 cut(s) 278, 559
NlaIV GGNNCC 2 cut(s) 164, 258
NsiI ATGCAT 1 cut(s) 276
NspI RCATGY 1 cut(s) 559
PaeI GCATGC 1 cut(s) 559
PceI AGGCCT 1 cut(s) 532
PciSI GCTCTTC 1 cut(s) 504
PctI GAATGC 1 cut(s) 380
PkrI GCNGC 2 cut(s) 50, 523
PmaCI CACGTG 1 cut(s) 110
PmlI CACGTG 1 cut(s) 110
Ppu21I YACGTR 1 cut(s) 110
Psp6I CCWGG 1 cut(s) 87
PspCI CACGTG 1 cut(s) 110
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 2 cut(s) 164, 258
PspPI GGNCC 1 cut(s) 122
RsaI GTAC 2 cut(s) 86, 324
RsaNI GTAC 2 cut(s) 85, 323
SapI GCTCTTC 1 cut(s) 504
SaqAI TTAA 1 cut(s) 462
SatI GCNGC 2 cut(s) 49, 522
Sau3AI GATC 2 cut(s) 439, 480
Sau96I GGNCC 1 cut(s) 122
ScrFI CCNGG 2 cut(s) 89, 229
SduI GDGCHC 2 cut(s) 400, 455
SetI ASST 6 cut(s) 39, 90, 112, 198, 262, 449
SfaNI GCATC 2 cut(s) 35, 261
SpeI ACTAGT 1 cut(s) 433
SphI GCATGC 1 cut(s) 559
Sse9I AATT 3 cut(s) 65, 315, 330
SseBI AGGCCT 1 cut(s) 532
SspMI CTAG 1 cut(s) 434
StuI AGGCCT 1 cut(s) 532
StyD4I CCNGG 2 cut(s) 87, 227
StyI CCWWGG 1 cut(s) 443
TaiI ACGT 1 cut(s) 112
TasI AATT 3 cut(s) 65, 315, 330
TatI WGTACW 1 cut(s) 322
Tru1I TTAA 1 cut(s) 462
Tru9I TTAA 1 cut(s) 462
TscAI CASTG 1 cut(s) 552
TseI GCWGC 2 cut(s) 48, 521
TspDTI ATGAA 2 cut(s) 216, 222
TspRI CASTG 1 cut(s) 552
XceI RCATGY 1 cut(s) 559
XspI CTAG 1 cut(s) 434
Zsp2I ATGCAT 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.