Rw5G018930

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
24402279 .. 24418686
16408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G018930.1

Sequence Viewer

Length: 3057 bp
ATGAATTACACATTCTTCTTCCCTGGGCTTCTTGTTCATTCTATCTTGCTGGTTATCTATGCAAGCTTTGCTTTCGGAGCTACTCGATTATCAGAAGATGAAGTACAAGCTTTAAAGATCATTGGAAATACATTGGGGAAGGACCGGAATTTCATTGCAGATCCTTGTAGCAGCGAAGCATCTAGATGGATTAATACTACCTCACCAGACAGCGCAGTTACGAACAACGTCACCTGCGGCAATTGCAGTACCGCTGGCGATGATCAGATCTGCCATGTTACAAGCATATCTCTGAAAGCTCAGGATTTAGTAGGAACACTCCCACCAGAGTTGGCGAGGCTCCCCTATCTACAAATGATTGACCTCTCCCGCAACTATCTGAGTGGTACCATCCCTCGAGAATGGGGCTCCCTGCCACTGGTTAACATTTCCCTTGCTGGAAACCGTTTAACAGGTTCTATCCCCATTGAGCTCGGAAACATTAGCACCCTGCAAAGTTTGGACATCACTTCCAATTATTTTACAGGACTTCCTGTGGAGCTTGGGAATTTAACCAGCATAGACAAAATGTTTCTTGCCTCGAACAATTTTACTGGGAAGTTGCCCGAAACATTTGCAAGGCTTACCACATTAACGGACTTTCGGGTTGGTGACAGTCACTTTTCTGGGAAGATACCTGATTTCATTCAGAACTGGAAAAATCTTAGAAAACTAGTAATTCAGGCTAGTGGTTTGACTGGGCCAATTCCATCCAACATCTCTCTTTTGAAGGAATTAACTAACCTGAGAATTACTGACTTGGATGGACCTGAAGCACCTTTTCCTCCACTTGATAATATGACAAAACTGAAAGCACTGATGTTGAGGAATTGCAATCTTACTGGAGAGCTACCTACGTATCTTGCGAAACTGACAGAGTTGGACAAATTAGACCTCAGCTTTAACAAGCTTACTGGGAAAATTCCCAGCCCCATTGTTTATAAAGATAATTCGGAGTACATATTCTTAACTGGAAACTTGCTGAATGGACCAGTGCCCGAATCGCTGAAAGGAAGCAGCATTGATCTTTCATACAACAACATGACCATTAGTGGGACCGACAATTGTGTTGGCCGTGGCGGCATGAACTTGTTTGCAAGCTCGTCAAAGGGAAATAAGTCAATTATTTCATGTTTGAATAATGCAACATGTTCGAAAGAGTCGCACTCTCTCCGTATAAATTGTGGTGGAAATGAAATAACTGTTCCTGAAAATATCACCACCTCCATAACATATGAAGCAGATGACAATCAAGGTGGTCCTTCATTATTTTACAAAGGCAAAAGCAATTGGGGGTTTAGCAGCACTGGTTACTACCCTGATGATGACAGAGAACCGGACACCTTTATTGTGTCTAATATATCTACACTCTCTATGCGCAATCCTCAACTGTACATGACGGCACGCGTTTCACCCATCTCTCTAACGTATTTTGGGTTTTGCCTGATGAATGGAAACTACACAGTGAAGCTCCATTTTGCAGAGATAATGTTTACAAATGACAAAACATATCGTAGCTTGGGAAGGCGTATATTTGATGTTTACATTCAGGGGAAACGAGTGGAGAAGGATTTTAATATTGCGGATGCAGCAGGTGGGAGTGGTATATTAGTCATAAGAAACTATATTGCTTCTGTAACAACTCATACCTTGGAGATTCGTTTCTTTTGGAACGGGAAAGGAACACAGGTTATCCCTACTGAAGGAGTCTATGGTCCTCTTATATCCGGCATTGTTGTAGACCCATTTGATTTTATACCCCCGAAAGAAACCTCGCCAGGAGGTGGAAGTGGTATATCCGCAGGTGAAGTGGTTGGAATTGTGGGGGGAGGAGTGTTCATAATATTGGTGATTTTATGTATTCTCTGGTGGAAAGGTTTCATAGGACCAGCACATACTTTGGCACAAGATTTGAAAGGGGTGGACCTGCAGACTGGCAAATTTACCTTGAGGCAAGTCAAAACTGCCACGAACAACTTTGACGTAGCAAACAAGATTGGAGAAGGTGGTTTTGGTCCTGTTTACAGGGGCCTTCTATCAGATAACACTGCAATTGCTGTTAAGAAGCTTTCAGCTAAATCGAAGCAAGGAAATCGTGAATTTGTGAATGAGATAGGCATGATTTCTGCTCTGCAACACCCTCACCTTGTCAAGCTTTATGGATGCTGTATTGAAGGAAATAACTTGTTGCTTGTCTATGAGTACATGGAAAACAATAGTCTCGCACGTGCTCTATTTGGCCCAAAAGAAAGTCAGGTCATGAAGCTGGACTGGTCAACAAGGCATAGGATTTGTGTTGGTATAGCCAGAGGTTTGGCTTACCTCCATGAGGAATCAAGGTTGAAGATCGTTCATAGAGACATCAAAGCTACTAATGTGCTACTTGATAAAAATCTTTTCCCAAAGATATCTGACTTTGGATTGGCCAAGCTTGATGAAGACGATAATACCCACATAAGCACTCGGATTGCTGGAACTTTTGGTTATATGGCACCTGAATATGCAATGCGGGGTTATCTAACTGATAAAGCAGATGTTTATAGTTTCGGAATTCTTGTATTGGAAATGGTCAGTGGAAGGTGCAATACAACTTACCGCTCAAAGGAAGAATGCTTTTATCTTCTAGATTGGGCACTTCTTCTAAAAGAGAGAGCAAGCTTGTTGGACCTGGTGGATCCAAGGTTGGGCTCAGAGTTCAACAAAGAAGAGATGATTTCTACGATCAATATTGCTCTCCTTTGTTCTAATGCTTCTTCAGCAGTTAGGCCCGCCATGTCTTCAGTGGTGAGCATGCTTGAAGGTAAGGCTTCTGTTCCGGAGGTGGTCTTTGATCCAAATGCTTCAATTAATGAAATCAATGAGATGAGGAAACATTTTCAATCCATTATTGAAGAAAACAATGGTGACCCTGAGAGTGGTGGACGAACTATGTCAATTGAAGGGTGGTGGACTGCTTCATCTACATCTGCTCAAGACCTCTACCCAGTCCGCCCTGATTCATGTTATTGGGAGAATTAA

Protein Analysis

1018

Amino Acids

111.83

Weight (kDa)

5.77

Isoelectric Point (pI)

32.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 157 - 264 8.8e-08 Leucine-rich repeat region
Malectin PF11721 403 - 591 3.4e-42 Malectin domain
Pkinase PF00069 674 - 875 1.4e-45 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 675 - 878 2e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000292)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53420 AT3G14840
fragaria_vesca FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17851
malus_domestica MD03G1246600.v1.1 MD06G1045200.v1.1 MD06G1045400.v1.1 MD11G1267800.v1.1 MD11G1267900.v1.1 MD11G1268100.v1.1 MD11G1268300.v1.1 MD11G1268500.v1.1 MD11G1268600.v1.1
prunus_persica Prupe.4G157700_v2.0.a1 Prupe.4G157700_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1
pyrus_communis pycom03g19540 pycom11g23600 pycom11g23630 pycom11g23690 pycom11g23720 pycom11g23730 pycom11g23740 pycom11g23750
rosa_chinensis RchiOBHm_Chr0c40g0503411 RchiOBHm_Chr0c40g0503421 RchiOBHm_Chr5g0029631 RchiOBHm_Chr5g0029661 RchiOBHm_Chr5g0029701 RchiOBHm_Chr5g0029741 RchiOBHm_Chr5g0029771 RchiOBHm_Chr5g0029781 RchiOBHm_Chr5g0029811 RchiOBHm_Chr5g0029851 RchiOBHm_Chr5g0029871 RchiOBHm_Chr5g0029891 RchiOBHm_Chr7g0222221
rosa_laevigata RLG00000017380 RLG00000032873 RLG00000033188 RLG00000033190 RLG00000033192 RLG00000033193 RLG00000033194 RLG00000033196 RLG00000033199 RLG00000033238
rosa_multiflora Rmu_co8359987.1_g000001 Rmu_co8444909.1_g000001 Rmu_sc0001608.1_g000007 Rmu_sc0001608.1_g000009 Rmu_sc0001608.1_g000013 Rmu_sc0001608.1_g000018 Rmu_sc0001608.1_g000023 Rmu_sc0001608.1_g000040 Rmu_sc0003238.1_g000016 Rmu_sc0003368.1_g000026 Rmu_sc0003368.1_g000034 Rmu_sc0003368.1_g000043 Rmu_sc0003368.1_g000047 Rmu_sc0003368.1_g000052 Rmu_sc0003368.1_g000054 Rmu_sc0004963.1_g000001
rosa_roxburghii Rroxscaffold_1G00050080 Rroxscaffold_1G00050090 Rroxscaffold_1G00050110 Rroxscaffold_1G00050120 Rroxscaffold_1G00050180 Rroxscaffold_1G00050190 Rroxscaffold_1G00050220 Rroxscaffold_1G00050270 Rroxscaffold_1G00050300
rosa_rugosa Rorug04G0065200 Rorug05G0114900 Rorug05G0115000 Rorug05G0115100 Rorug05G0120100 Rorug05G0238900
rosa_samantha Rh5AG207800 Rh5AG208000 Rh5AG208300 Rh5AG208400 Rh5AG208800 Rh5AG294900 Rh5AG295000 Rh5AG295400 Rh5CG230400 Rh7AG347800
rosa_wichuraiana Rw0G005370 Rw0G012460 Rw0G019060 Rw5G018910 Rw5G018920 Rw5G018930 Rw5G018940 Rw5G018960 Rw5G018970 Rw5G018980 Rw5G018990 Rw5G019000 Rw7G029840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 981
AarI CACCTGC 3 cut(s) 242, 1622, 1832
Acc16I TGCGCA 1 cut(s) 1418
Acc36I ACCTGC 4 cut(s) 242, 1622, 1832, 1974
Acc65I GGTACC 1 cut(s) 386
AccB1I GGYRCC 2 cut(s) 386, 2530
AccB7I CCANNNNNTGG 1 cut(s) 1823
AccBSI CCGCTC 1 cut(s) 2637
AccI GTMKAC 1 cut(s) 1779
AccII CGCG 1 cut(s) 1446
AccIII TCCGGA 1 cut(s) 2854
AclWI GGATC 4 cut(s) 155, 2708, 2721, 2864
AcoI YGGCCR 2 cut(s) 1111, 2463
AcsI RAATTY 6 cut(s) 148, 547, 960, 1979, 2138, 2589
AcuI CTGAAG 4 cut(s) 831, 1761, 2778, 2802
AcvI CACGTG 1 cut(s) 2267
AfaI GTAC 6 cut(s) 105, 250, 388, 998, 1433, 2243
AfiI CCNNNNNNNGG 8 cut(s) 418, 1092, 1742, 1823, 2368, 2641, 2723, 2954
AflIII ACRYGT 2 cut(s) 1187, 1444
AhlI ACTAGT 1 cut(s) 712
AjnI CCWGG 3 cut(s) 22, 1816, 2706
AjuI GAANNNNNNNTTGG 2 cut(s) 2034, 2066
Alw21I GWGCWC 2 cut(s) 474, 2272
Alw26I GTCTC 2 cut(s) 2264, 2391
AlwI GGATC 4 cut(s) 155, 2708, 2721, 2864
Ama87I CYCGRG 1 cut(s) 396
Aor13HI TCCGGA 1 cut(s) 2854
AoxI GGCC 6 cut(s) 740, 1111, 2068, 2278, 2463, 2804
ApeKI GCWGC 4 cut(s) 171, 1056, 1341, 1628
ApoI RAATTY 6 cut(s) 148, 547, 960, 1979, 2138, 2589
AseI ATTAAT 2 cut(s) 192, 2886
Asp700I GAANNNNTTC 1 cut(s) 1916
Asp718I GGTACC 1 cut(s) 386
AspLEI GCGC 2 cut(s) 215, 1419
AsuII TTCGAA 1 cut(s) 1193
AvaI CYCGRG 1 cut(s) 396
BaeGI GKGCMC 2 cut(s) 1038, 2674
BaeI ACNNNNGTAYC 2 cut(s) 881, 914
BalI TGGCCA 1 cut(s) 2465
BamHI GGATCC 1 cut(s) 2713
BanI GGYRCC 2 cut(s) 386, 2530
BanII GRGCYC 3 cut(s) 410, 474, 2729
BarI GAAGNNNNNNTAC 4 cut(s) 87, 119, 2608, 2640
BbrPI CACGTG 1 cut(s) 2267
BbsI GAAGAC 2 cut(s) 2484, 2808
Bbv12I GWGCWC 2 cut(s) 474, 2272
BbvCI CCTCAGC 1 cut(s) 935
BbvI GCAGC 4 cut(s) 183, 1068, 1353, 1640
BccI CCATC 5 cut(s) 180, 398, 757, 797, 1463
BceAI ACGGC 2 cut(s) 1098, 1455
BcgI CGANNNNNNTGC 6 cut(s) 596, 630, 1173, 1207, 2114, 2148
BciT130I CCWGG 3 cut(s) 24, 1818, 2708
BclI TGATCA 1 cut(s) 262
BcoDI GTCTC 2 cut(s) 2264, 2391
BcuI ACTAGT 1 cut(s) 712
BfaI CTAG 4 cut(s) 183, 713, 726, 2663
BfmI CTRYAG 1 cut(s) 1967
BfuAI ACCTGC 4 cut(s) 242, 1622, 1832, 1974
BglI GCCNNNNNGGC 1 cut(s) 1119
BglII AGATCT 1 cut(s) 267
BisI GCNGC 6 cut(s) 172, 238, 1057, 1120, 1342, 1629
BlsI GCNGC 6 cut(s) 173, 239, 1058, 1121, 1343, 1630
Bme1390I CCNGG 3 cut(s) 24, 1818, 2708
BmeT110I CYCGRG 1 cut(s) 396
BmiI GGNNCC 7 cut(s) 341, 388, 409, 1096, 2069, 2532, 2715
BmrFI CCNGG 3 cut(s) 24, 1818, 2708
BmrI ACTGGG 4 cut(s) 603, 747, 963, 3017
BmsI GCATC 3 cut(s) 188, 1615, 2192
BmuI ACTGGG 4 cut(s) 603, 747, 963, 3017
BpiI GAAGAC 2 cut(s) 2484, 2808
BplI GAGNNNNNCTC 2 cut(s) 1190, 1222
BpmI CTGGAG 1 cut(s) 903
Bpu10I CCTNAGC 2 cut(s) 300, 935
Bpu14I TTCGAA 1 cut(s) 1193
BpuEI CTTGAG 2 cut(s) 2008, 2994
BsaAI YACGTR 2 cut(s) 897, 2267
BsaBI GATNNNNATC 2 cut(s) 1287, 2430
BsaJI CCNNGG 5 cut(s) 22, 23, 1114, 1689, 2717
BsaWI WCCGGW 3 cut(s) 144, 1375, 2854
Bsc4I CCNNNNNNNGG 8 cut(s) 418, 1092, 1742, 1823, 2368, 2641, 2723, 2954
Bse3DI GCAATG 2 cut(s) 153, 2550
Bse8I GATNNNNATC 2 cut(s) 1287, 2430
BseAI TCCGGA 1 cut(s) 2854
BseBI CCWGG 3 cut(s) 24, 1818, 2708
BseDI CCNNGG 5 cut(s) 22, 23, 1114, 1689, 2717
BseGI GGATG 5 cut(s) 390, 749, 808, 1630, 2207
BseJI GATNNNNATC 2 cut(s) 1287, 2430
BseLI CCNNNNNNNGG 8 cut(s) 418, 1092, 1742, 1823, 2368, 2641, 2723, 2954
BseMI GCAATG 2 cut(s) 153, 2550
BseMII CTCAG 6 cut(s) 314, 371, 776, 949, 2742, 2940
BseRI GAGGAG 1 cut(s) 1884
BseSI GKGCMC 2 cut(s) 1038, 2674
BseXI GCAGC 4 cut(s) 183, 1068, 1353, 1640
BseYI CCCAGC 1 cut(s) 965
Bsh1236I CGCG 1 cut(s) 1446
BshFI GGCC 6 cut(s) 742, 1113, 2070, 2280, 2465, 2806
BshNI GGYRCC 2 cut(s) 386, 2530
BsiHKAI GWGCWC 2 cut(s) 474, 2272
BsiHKCI CYCGRG 1 cut(s) 396
BsiSI CCGG 4 cut(s) 145, 1376, 1767, 2855
BslFI GGGAC 1 cut(s) 1108
BslI CCNNNNNNNGG 8 cut(s) 418, 1092, 1742, 1823, 2368, 2641, 2723, 2954
BsmAI GTCTC 2 cut(s) 2264, 2391
BsmFI GGGAC 1 cut(s) 1108
BsmI GAATGC 1 cut(s) 2654
BsnI GGCC 6 cut(s) 742, 1113, 2070, 2280, 2465, 2806
BsoBI CYCGRG 1 cut(s) 396
Bsp119I TTCGAA 1 cut(s) 1193
Bsp1286I GDGCHC 6 cut(s) 410, 474, 1038, 2272, 2674, 2729
Bsp13I TCCGGA 1 cut(s) 2854
Bsp1407I TGTACA 1 cut(s) 1431
Bsp143I GATC 9 cut(s) 117, 160, 262, 267, 1063, 2385, 2713, 2760, 2869
BspANI GGCC 6 cut(s) 742, 1113, 2070, 2280, 2465, 2806
BspCNI CTCAG 6 cut(s) 313, 372, 777, 948, 2741, 2941
BspEI TCCGGA 1 cut(s) 2854
BspFNI CGCG 1 cut(s) 1446
BspHI TCATGA 1 cut(s) 2298
BspLI GGNNCC 7 cut(s) 341, 388, 409, 1096, 2069, 2532, 2715
BspMAI CTGCAG 1 cut(s) 1971
BspMI ACCTGC 4 cut(s) 242, 1622, 1832, 1974
BspPI GGATC 4 cut(s) 155, 2708, 2721, 2864
BspT104I TTCGAA 1 cut(s) 1193
BspT107I GGYRCC 2 cut(s) 386, 2530
BsrBI CCGCTC 1 cut(s) 2637
BsrDI GCAATG 2 cut(s) 153, 2550
BsrGI TGTACA 1 cut(s) 1431
BssECI CCNNGG 5 cut(s) 22, 23, 1114, 1689, 2717
BssMI GATC 9 cut(s) 117, 160, 262, 267, 1063, 2385, 2713, 2760, 2869
BssT1I CCWWGG 2 cut(s) 1689, 2717
Bst2UI CCWGG 3 cut(s) 24, 1818, 2708
Bst4CI ACNGT 5 cut(s) 446, 656, 1243, 1431, 1504
Bst6I CTCTTC 1 cut(s) 2739
BstAPI GCANNNNNTGC 1 cut(s) 68
BstAUI TGTACA 1 cut(s) 1431
BstBAI YACGTR 2 cut(s) 897, 2267
BstBI TTCGAA 1 cut(s) 1193
BstC8I GCNNGC 7 cut(s) 64, 256, 1138, 1444, 2695, 2808, 2831
BstDEI CTNAG 7 cut(s) 300, 380, 704, 785, 935, 2728, 2949
BstDSI CCRYGG 1 cut(s) 1114
BstEII GGTNACC 1 cut(s) 2942
BstENI CCTNNNNNAGG 2 cut(s) 1740, 2366
BstF5I GGATG 5 cut(s) 390, 749, 808, 1630, 2207
BstFNI CGCG 1 cut(s) 1446
BstHHI GCGC 2 cut(s) 215, 1419
BstKTI GATC 9 cut(s) 120, 163, 265, 270, 1066, 2388, 2716, 2763, 2872
BstMAI GTCTC 2 cut(s) 2264, 2391
BstMBI GATC 9 cut(s) 117, 160, 262, 267, 1063, 2385, 2713, 2760, 2869
BstMWI GCNNNNNNNGC 7 cut(s) 68, 77, 243, 1042, 1119, 1628, 2795
BstNI CCWGG 3 cut(s) 24, 1818, 2708
BstNSI RCATGY 2 cut(s) 1191, 2833
BstPI GGTNACC 1 cut(s) 2942
BstSCI CCNGG 3 cut(s) 22, 1816, 2706
BstSFI CTRYAG 1 cut(s) 1967
BstSLI GKGCMC 2 cut(s) 1038, 2674
BstSNI TACGTA 1 cut(s) 897
BstUI CGCG 1 cut(s) 1446
BstV1I GCAGC 4 cut(s) 183, 1068, 1353, 1640
BstV2I GAAGAC 2 cut(s) 2484, 2808
BstX2I RGATCY 3 cut(s) 160, 267, 2713
BstXI CCANNNNNNTGG 1 cut(s) 2353
BstYI RGATCY 3 cut(s) 160, 267, 2713
BsuRI GGCC 6 cut(s) 742, 1113, 2070, 2280, 2465, 2806
BtgI CCRYGG 1 cut(s) 1114
BtgZI GCGATG 1 cut(s) 273
BtsCI GGATG 5 cut(s) 390, 749, 808, 1630, 2207
BtsI GCAGTG 1 cut(s) 2085
BtsIMutI CAGTG 8 cut(s) 416, 854, 1038, 1344, 1509, 2085, 2617, 2826
BveI ACCTGC 4 cut(s) 242, 1622, 1832, 1974
Cac8I GCNNGC 7 cut(s) 64, 256, 1138, 1444, 2695, 2808, 2831
CciI TCATGA 1 cut(s) 2298
CfoI GCGC 2 cut(s) 215, 1419
CsiI ACCWGGT 1 cut(s) 2706
Csp6I GTAC 6 cut(s) 104, 249, 387, 997, 1432, 2242
CspCI CAANNNNNGTGG 4 cut(s) 312, 347, 1276, 1311
CviQI GTAC 6 cut(s) 104, 249, 387, 997, 1432, 2242
DdeI CTNAG 7 cut(s) 300, 380, 704, 785, 935, 2728, 2949
DpnI GATC 9 cut(s) 119, 162, 264, 269, 1065, 2387, 2715, 2762, 2871
DpnII GATC 9 cut(s) 117, 160, 262, 267, 1063, 2385, 2713, 2760, 2869
DraI TTTAAA 1 cut(s) 114
EaeI YGGCCR 2 cut(s) 1111, 2463
Eam1104I CTCTTC 1 cut(s) 2739
EarI CTCTTC 1 cut(s) 2739
EciI GGCGGA 1 cut(s) 3017
Ecl136II GAGCTC 1 cut(s) 472
Eco105I TACGTA 1 cut(s) 897
Eco130I CCWWGG 2 cut(s) 1689, 2717
Eco24I GRGCYC 3 cut(s) 410, 474, 2729
Eco32I GATATC 1 cut(s) 2448
Eco53kI GAGCTC 1 cut(s) 472
Eco57I CTGAAG 4 cut(s) 831, 1761, 2778, 2802
Eco72I CACGTG 1 cut(s) 2267
Eco88I CYCGRG 1 cut(s) 396
Eco91I GGTNACC 1 cut(s) 2942
EcoICRI GAGCTC 1 cut(s) 472
EcoNI CCTNNNNNAGG 2 cut(s) 1740, 2366
EcoO109I RGGNCCY 1 cut(s) 2068
EcoO65I GGTNACC 1 cut(s) 2942
EcoRI GAATTC 1 cut(s) 2589
EcoRII CCWGG 3 cut(s) 22, 1816, 2706
EcoRV GATATC 1 cut(s) 2448
EcoT14I CCWWGG 2 cut(s) 1689, 2717
EcoT38I GRGCYC 3 cut(s) 410, 474, 2729
ErhI CCWWGG 2 cut(s) 1689, 2717
FalI AAGNNNNNCTT 2 cut(s) 55, 87
FaqI GGGAC 1 cut(s) 1108
FauI CCCGC 3 cut(s) 377, 2541, 2815
FauNDI CATATG 1 cut(s) 1273
FbaI TGATCA 1 cut(s) 262
FblI GTMKAC 1 cut(s) 1779
Fnu4HI GCNGC 6 cut(s) 172, 238, 1057, 1120, 1342, 1629
FokI GGATG 5 cut(s) 377, 736, 815, 1637, 2214
FriOI GRGCYC 3 cut(s) 410, 474, 2729
Fsp4HI GCNGC 6 cut(s) 172, 238, 1057, 1120, 1342, 1629
FspBI CTAG 4 cut(s) 183, 713, 726, 2663
FspI TGCGCA 1 cut(s) 1418
GlaI GCGC 2 cut(s) 214, 1418
GluI GCNGC 6 cut(s) 172, 238, 1057, 1120, 1342, 1629
GsaI CCCAGC 1 cut(s) 969
GsuI CTGGAG 1 cut(s) 903
HaeIII GGCC 6 cut(s) 742, 1113, 2070, 2280, 2465, 2806
HapII CCGG 4 cut(s) 145, 1376, 1767, 2855
HhaI GCGC 2 cut(s) 215, 1419
Hin6I GCGC 2 cut(s) 213, 1417
HinP1I GCGC 2 cut(s) 213, 1417
HincII GTYRAC 2 cut(s) 424, 2316
HindII GTYRAC 2 cut(s) 424, 2316
HindIII AAGCTT 7 cut(s) 64, 108, 947, 2105, 2192, 2468, 2695
HinfI GANTC 6 cut(s) 1040, 1199, 1696, 1746, 2372, 3035
HpaI GTTAAC 1 cut(s) 424
HpaII CCGG 4 cut(s) 145, 1376, 1767, 2855
Hpy166II GTNNAC 9 cut(s) 424, 1533, 1582, 1780, 1963, 2062, 2316, 2960, 2988
Hpy188III TCNNGA 9 cut(s) 183, 302, 398, 1247, 2135, 2299, 2663, 2855, 3011
Hpy8I GTNNAC 9 cut(s) 424, 1533, 1582, 1780, 1963, 2062, 2316, 2960, 2988
HpyCH4III ACNGT 5 cut(s) 446, 656, 1243, 1431, 1504
HpyCH4IV ACGT 5 cut(s) 228, 896, 1466, 2022, 2266
HpyF10VI GCNNNNNNNGC 7 cut(s) 68, 77, 243, 1042, 1119, 1628, 2795
HpyF3I CTNAG 7 cut(s) 300, 380, 704, 785, 935, 2728, 2949
HpySE526I ACGT 5 cut(s) 228, 896, 1466, 2022, 2266
HspAI GCGC 2 cut(s) 213, 1417
Kpn2I TCCGGA 1 cut(s) 2854
KpnI GGTACC 1 cut(s) 390
Ksp22I TGATCA 1 cut(s) 262
KspAI GTTAAC 1 cut(s) 424
Kzo9I GATC 9 cut(s) 117, 160, 262, 267, 1063, 2385, 2713, 2760, 2869
LmnI GCTCC 5 cut(s) 77, 345, 413, 538, 1515
Lsp1109I GCAGC 4 cut(s) 183, 1068, 1353, 1640
LweI GCATC 3 cut(s) 188, 1615, 2192
MabI ACCWGGT 1 cut(s) 2706
MaeI CTAG 4 cut(s) 183, 713, 726, 2663
MaeII ACGT 5 cut(s) 228, 896, 1466, 2022, 2266
MaeIII GTNAC 8 cut(s) 217, 229, 277, 650, 656, 1349, 1675, 2942
MalI GATC 9 cut(s) 119, 162, 264, 269, 1065, 2387, 2715, 2762, 2871
MbiI CCGCTC 1 cut(s) 2637
MboI GATC 9 cut(s) 117, 160, 262, 267, 1063, 2385, 2713, 2760, 2869
MfeI CAATTG 5 cut(s) 241, 1102, 1327, 2091, 2973
MflI RGATCY 3 cut(s) 160, 267, 2713
MhlI GDGCHC 6 cut(s) 410, 474, 1038, 2272, 2674, 2729
MlsI TGGCCA 1 cut(s) 2465
MluI ACGCGT 1 cut(s) 1444
MluNI TGGCCA 1 cut(s) 2465
MlyI GAGTC 2 cut(s) 1208, 1755
MmeI TCCRAC 4 cut(s) 777, 900, 1834, 2682
Mox20I TGGCCA 1 cut(s) 2465
MroI TCCGGA 1 cut(s) 2854
MroXI GAANNNNTTC 1 cut(s) 1916
MscI TGGCCA 1 cut(s) 2465
MslI CAYNNNNRTG 1 cut(s) 184
Msp20I TGGCCA 1 cut(s) 2465
MspA1I CMGCKG 1 cut(s) 254
MspI CCGG 4 cut(s) 145, 1376, 1767, 2855
MspR9I CCNGG 3 cut(s) 24, 1818, 2708
MunI CAATTG 5 cut(s) 241, 1102, 1327, 2091, 2973
Mva1269I GAATGC 1 cut(s) 2654
MvaI CCWGG 3 cut(s) 24, 1818, 2708
MvnI CGCG 1 cut(s) 1446
MwoI GCNNNNNNNGC 7 cut(s) 68, 77, 243, 1042, 1119, 1628, 2795
NdeI CATATG 1 cut(s) 1273
NdeII GATC 9 cut(s) 117, 160, 262, 267, 1063, 2385, 2713, 2760, 2869
NlaIV GGNNCC 7 cut(s) 341, 388, 409, 1096, 2069, 2532, 2715
NmuCI GTSAC 4 cut(s) 229, 650, 656, 2942
NsbI TGCGCA 1 cut(s) 1418
NspI RCATGY 2 cut(s) 1191, 2833
NspV TTCGAA 1 cut(s) 1193
PaeI GCATGC 1 cut(s) 2833
PaeR7I CTCGAG 1 cut(s) 396
PagI TCATGA 1 cut(s) 2298
PaqCI CACCTGC 3 cut(s) 242, 1622, 1832
PasI CCCWGGG 1 cut(s) 23
PciI ACATGT 1 cut(s) 1187
PcsI WCGNNNNNNNCGW 1 cut(s) 902
PctI GAATGC 1 cut(s) 2654
PdmI GAANNNNTTC 1 cut(s) 1916
PfeI GAWTC 4 cut(s) 1040, 1696, 2372, 3035
PflMI CCANNNNNTGG 1 cut(s) 1823
PkrI GCNGC 6 cut(s) 173, 239, 1058, 1121, 1343, 1630
PleI GAGTC 2 cut(s) 1207, 1754
PmaCI CACGTG 1 cut(s) 2267
PmlI CACGTG 1 cut(s) 2267
PpsI GAGTC 2 cut(s) 1207, 1754
Ppu21I YACGTR 2 cut(s) 897, 2267
PscI ACATGT 1 cut(s) 1187
PshBI ATTAAT 2 cut(s) 192, 2886
PsiI TTATAA 1 cut(s) 981
Psp124BI GAGCTC 1 cut(s) 474
Psp6I CCWGG 3 cut(s) 22, 1816, 2706
PspCI CACGTG 1 cut(s) 2267
PspEI GGTNACC 1 cut(s) 2942
PspFI CCCAGC 1 cut(s) 965
PspGI CCWGG 3 cut(s) 22, 1816, 2706
PspN4I GGNNCC 7 cut(s) 341, 388, 409, 1096, 2069, 2532, 2715
PstI CTGCAG 1 cut(s) 1971
PsuI RGATCY 3 cut(s) 160, 267, 2713
RsaI GTAC 6 cut(s) 105, 250, 388, 998, 1433, 2243
RsaNI GTAC 6 cut(s) 104, 249, 387, 997, 1432, 2242
RseI CAYNNNNRTG 1 cut(s) 184
SacI GAGCTC 1 cut(s) 474
SatI GCNGC 6 cut(s) 172, 238, 1057, 1120, 1342, 1629
Sau3AI GATC 9 cut(s) 117, 160, 262, 267, 1063, 2385, 2713, 2760, 2869
SchI GAGTC 2 cut(s) 1208, 1755
ScrFI CCNGG 3 cut(s) 24, 1818, 2708
SduI GDGCHC 6 cut(s) 410, 474, 1038, 2272, 2674, 2729
SexAI ACCWGGT 1 cut(s) 2706
SfaNI GCATC 3 cut(s) 188, 1615, 2192
SfcI CTRYAG 1 cut(s) 1967
Sfr274I CTCGAG 1 cut(s) 396
SfuI TTCGAA 1 cut(s) 1193
SlaI CTCGAG 1 cut(s) 396
SmiMI CAYNNNNRTG 1 cut(s) 184
SmlI CTYRAG 3 cut(s) 396, 1987, 3009
SmoI CTYRAG 3 cut(s) 396, 1987, 3009
SnaBI TACGTA 1 cut(s) 897
SpeI ACTAGT 1 cut(s) 712
SphI GCATGC 1 cut(s) 2833
SspI AATATT 3 cut(s) 1618, 1884, 2767
SspMI CTAG 4 cut(s) 183, 713, 726, 2663
SstI GAGCTC 1 cut(s) 474
StyD4I CCNGG 3 cut(s) 22, 1816, 2706
StyI CCWWGG 2 cut(s) 1689, 2717
TaaI ACNGT 5 cut(s) 446, 656, 1243, 1431, 1504
TaiI ACGT 5 cut(s) 231, 899, 1469, 2025, 2269
TaqI TCGA 5 cut(s) 85, 397, 581, 1193, 2120
TaqII GACCGA 1 cut(s) 1112
TatI WGTACW 4 cut(s) 103, 996, 1431, 2241
TauI GCSGC 2 cut(s) 240, 1122
TfiI GAWTC 4 cut(s) 1040, 1696, 2372, 3035
TscAI CASTG 8 cut(s) 423, 861, 1038, 1351, 1509, 2092, 2617, 2826
TseFI GTSAC 4 cut(s) 229, 650, 656, 2942
TseI GCWGC 4 cut(s) 171, 1056, 1341, 1628
Tsp45I GTSAC 4 cut(s) 229, 650, 656, 2942
TspGWI ACGGA 2 cut(s) 650, 1202
TspRI CASTG 8 cut(s) 423, 861, 1038, 1351, 1509, 2092, 2617, 2826
Van91I CCANNNNNTGG 1 cut(s) 1823
VspI ATTAAT 2 cut(s) 192, 2886
XagI CCTNNNNNAGG 2 cut(s) 1740, 2366
XapI RAATTY 6 cut(s) 148, 547, 960, 1979, 2138, 2589
XbaI TCTAGA 2 cut(s) 182, 2662
XceI RCATGY 2 cut(s) 1191, 2833
XcmI CCANNNNNNNNNTGG 1 cut(s) 2818
XhoI CTCGAG 1 cut(s) 396
XmiI GTMKAC 1 cut(s) 1779
XmnI GAANNNNTTC 1 cut(s) 1916
XspI CTAG 4 cut(s) 183, 713, 726, 2663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.