Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000292

Physical Location & Seq

Genomic Coordinates Forward (+)

10234076 .. 10237683

Gene Structure 3608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0115000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2919 bp

ATGAAAGGGACAGGTGCTCAGGCTGAATTAGCGAGGAAATGGTGTCCTCCCAACCTGAACAGAGACATAGGTGCTAAAAATTTTACTTTGGCTTGCTTTGAGGAGGAGCGGAAAGCCCTTCTTGAATTCAAACGCAGCCTTGATGATCCTTTACCCCGACTTTCATCGTGGATAGGGGAAGACTGCTGCAAGTGGACGCGTGTACGCTGCAGCAACCAAACAGGCCATGTTGTCAAGCTTGACCTTAGCTACCTCTGTGGTAAAGAAAGTGATTATGCAGCAACTGATGCTCCCATGTCGGCATGTGTAGGTGGTGAGCTATCTCCTTCTTTAGTTAATCTAACACACTTGAACTACTTGAACTTGAGTGGCAACACTTTCCATAGTATTCCCATCCCAAGTTTCATAGGTTCACTCGAGAAGTTGAGGTACCTTGACCTCTCCCACTCGGGTTTTGTGGGAATGGTCCCTCCTCATCTCGGAAATTTATCGAAACTGCTCCATCTTGATCTCTCAACATATTCAGATATGTGGGTTTCAGATTTAAAGTGGCTCTCTGGTCTCTCTTCTTTGCAATACCTGGGCTTGAAAGGGTTGAACCTTAGCCAGGCCACAGATCATTGGGTTCATGCTATTAATATGCTTCCTTCACTCTTAGAATTGCACTTTTCTTCTTGTAAACTTCATAGCGGCCTCCCCGAGTCTCTTCCACATCTAAATTTGACGTTACTTTTGGTCGTTGACCTCTCATTCAACAAATTTCAATCTTCATTACCTCAATGGCTATTTAATATTAGTACCCTTGTGACGGCAGATTTTTCTAATTCTGGATTTACTGGCTCCATTCCTGAAGTCTCATTGCTTAAGGACTTGGAAACTCTAAATCTGCAACAAAACTCACTCTCTGGTCCATTTCCAACATCAATAGGAAATCTGTTACATTTGCAGGCCCTGCACCTTTCAGAAAACCCAATCTCTGGTTCAGTTCCTACATCAATAGGAAATCTATTACAGTTGAGGACCCTATACCTTTCACAAAACTCAATCTCTGGTCCACTTCCGGCATCAATAGGAAATCTTTTCCATTTGGAAACCTTGGACCTTTCACAAAACTCAATCTCCGGTCCACTTCCAGCATCAATAGGAAATCTTTTCCATTTGAAAACCTTGGACCTCTCAAAAAACAAAATCTCTGGTCCACTTCCTATGTCAGTAGGAAATCTGTCACATTTGAATATCCTAGACCTTTCCTTCAACATGATGAAAGGCAGCATTCCAAAGAGTATTGGACAACTTACAGAATTAACTATCCTGAATCTGTTGTCTAATCAATGGGAAGGCGTCATAAGTGAAAGTCATTTTCAGAACCTCACAAGATTGGCTAACCTTCAATTATCATCGAAGTCTCTGGTTTTCAACATCAATCAGGAGTGGATTCCTTTCTTCAACGCATCTTTCATCACCATCCGTGATTGCCAATTTGTAAGTCCTGCATTTCCAGCATGGCTTAGAAGCCAATTCATCGTTTATATAGTTCTCTCAAATGTAGGTATTTCAGATACAATACCTGAGTGGTTTTGGAGAAACTCCCCACACATGAGTTGGTTGGATCTCTCTAATAACCAATTAAGAGGAAAGCTTCCATACTTGGAACGCTTTGGTGCATACGTTAATTTGGAAAACAACAACTTGGAGGGTTCCATTCCACTTTGGCCATATGTATCATACCTGAAGTTGGGAAGCAATAGATTTTCAGGACCAATTCCTTTGAACTTTGGCCAGGAGATGTCAACACTGAGTAGCCTAGACCTTTCCAGGAATAATCTGAGTGGTAGCATTCCCCATTCACTAATTAAACTGAAGAGATTGGATTCTATTGATCTCTCAAGGAATTGTTTATCTGGAAGTATCCCTAGGGATTGGAATGGTTCGGAAGGAATGTCGACCATAGATTTTTCCAATAACAATCTATCTGGGCAAATTCCACCAAGCTTGTGCTCTCAGCAACCTTCACTTTACTGGTTGAGATTAAGTAATAACAATCTTTTTGGGGAGCTTGGACCGTCCTTGCAAAACTGTCAGAACTTGGCTACACTCGATCTTGGAGGGAACAAGTTCTCTGGAGCCATTCCACAGTGGATTGGAGAAGACCTACGATCCCTGCAATTTTTACTTCTTGGAGAGAACAAGTTCACTGGAAGTATACCTCAACAACTGTGCGCTCTCTCTCGTCTTCATGTTTTAGATCTATCTCATAATGATTTATCAGGCTCTGTCCCAAGGTGTCTTGGTAATTTGACACAACTGACAAATTTAGGTAGAATGCCTCAGCCATTTCCCTCTCTTAGTAACACGCTGGATATGGATCCATGGCATATGGATTTGGATCCGAAAGGCGTACAATATGAATATACTAGTATTCTACCTCTTGTAAACACCATTGACCTGTCAAGCAATAATCTATCCGGAGAAATACCAGAAGAGATGAGAAACCTCTCCAACTTGGGTAGCTTGAATTTATCTCGGAATCTGTTGACAGGAAAGATACCGGAGGATATTGGAAGCTTACAACGGTTACAAATTCTTGACCTCTCCTGTAACCATCTTCATGGTCCAATTCCTCTAAGCATGACCGATATGACTTCACTGAGCAAATTGAACTTGTCATATAACGACTTGTCTGGGCCAATCCCATCTGCTAACCAATTCCAAACCTTCAATGATCCAACTTTATTTGAAGGAAACTTGGGACTTTGTGGCACTCCATTGCCAACTCAGTGCTCATCATCCCCTGATGGGAATCCAGAAGTTAAAGAAGATGCAGGTGAAGATGAAGAAGGGTCTGGAAAGATATGGTTCTATGTAAACACTACGATGGGATTCATTCTGGGATTTTGGGCTGTTTTTGGCAGTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

972

Amino Acids

107.12

Weight (kDa)

5.53

Isoelectric Point (pI)

36.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	35 - 71	1e-11	Leucine rich repeat N-terminal domain
LRR_14	PF23598	111 - 228	1.2e-09	Leucine-rich repeat region
LRR_8	PF13855	291 - 349	1.6e-07	Leucine rich repeat
LRR_14	PF23598	332 - 508	1.6e-22	Leucine-rich repeat region
LRR_8	PF13855	338 - 397	5.1e-07	Leucine rich repeat
LRR_8	PF13855	574 - 631	5.8e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53420 AT3G14840
fragaria_vesca	FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17851
malus_domestica	MD03G1246600.v1.1 MD06G1045200.v1.1 MD06G1045400.v1.1 MD11G1267800.v1.1 MD11G1267900.v1.1 MD11G1268100.v1.1 MD11G1268300.v1.1 MD11G1268500.v1.1 MD11G1268600.v1.1
prunus_persica	Prupe.4G157700_v2.0.a1 Prupe.4G157700_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1
pyrus_communis	pycom03g19540 pycom11g23600 pycom11g23630 pycom11g23690 pycom11g23720 pycom11g23730 pycom11g23740 pycom11g23750
rosa_chinensis	RchiOBHm_Chr0c40g0503411 RchiOBHm_Chr0c40g0503421 RchiOBHm_Chr5g0029631 RchiOBHm_Chr5g0029661 RchiOBHm_Chr5g0029701 RchiOBHm_Chr5g0029741 RchiOBHm_Chr5g0029771 RchiOBHm_Chr5g0029781 RchiOBHm_Chr5g0029811 RchiOBHm_Chr5g0029851 RchiOBHm_Chr5g0029871 RchiOBHm_Chr5g0029891 RchiOBHm_Chr7g0222221
rosa_laevigata	RLG00000017380 RLG00000032873 RLG00000033188 RLG00000033190 RLG00000033192 RLG00000033193 RLG00000033194 RLG00000033196 RLG00000033199 RLG00000033238
rosa_multiflora	Rmu_co8359987.1_g000001 Rmu_co8444909.1_g000001 Rmu_sc0001608.1_g000007 Rmu_sc0001608.1_g000009 Rmu_sc0001608.1_g000013 Rmu_sc0001608.1_g000018 Rmu_sc0001608.1_g000023 Rmu_sc0001608.1_g000040 Rmu_sc0003238.1_g000016 Rmu_sc0003368.1_g000026 Rmu_sc0003368.1_g000034 Rmu_sc0003368.1_g000043 Rmu_sc0003368.1_g000047 Rmu_sc0003368.1_g000052 Rmu_sc0003368.1_g000054 Rmu_sc0004963.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050080 Rroxscaffold_1G00050090 Rroxscaffold_1G00050110 Rroxscaffold_1G00050120 Rroxscaffold_1G00050180 Rroxscaffold_1G00050190 Rroxscaffold_1G00050220 Rroxscaffold_1G00050270 Rroxscaffold_1G00050300
rosa_rugosa	Rorug04G0065200 Rorug05G0114900 Rorug05G0115000 Rorug05G0115100 Rorug05G0120100 Rorug05G0238900
rosa_samantha	Rh5AG207800 Rh5AG208000 Rh5AG208300 Rh5AG208400 Rh5AG208800 Rh5AG294900 Rh5AG295000 Rh5AG295400 Rh5CG230400 Rh7AG347800
rosa_wichuraiana	Rw0G005370 Rw0G012460 Rw0G019060 Rw5G018910 Rw5G018920 Rw5G018930 Rw5G018940 Rw5G018960 Rw5G018970 Rw5G018980 Rw5G018990 Rw5G019000 Rw7G029840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2917
AarI	CACCTGC	1 cut(s)	2813
Acc36I	ACCTGC	1 cut(s)	2813
Acc65I	GGTACC	1 cut(s)	429
AccB1I	GGYRCC	1 cut(s)	429
AccB7I	CCANNNNNTGG	1 cut(s)	977
AccBSI	CCGCTC	1 cut(s)	109
AccI	GTMKAC	2 cut(s)	1943, 2203
AccII	CGCG	1 cut(s)	199
AccIII	TCCGGA	1 cut(s)	2465
AciI	CCGC	2 cut(s)	109, 690
AclWI	GGATC	8 cut(s)	140, 1617, 2151, 2360, 2373, 2381, 2394, 2717
AcoI	YGGCCR	2 cut(s)	1712, 1777
AcsI	RAATTY	9 cut(s)	79, 125, 484, 718, 758, 1980, 2311, 2515, 2580
AcuI	CTGAAG	3 cut(s)	870, 1751, 1880
AcyI	GRCGYC	1 cut(s)	1341
AfaI	GTAC	4 cut(s)	204, 431, 799, 2400
AfiI	CCNNNNNNNGG	6 cut(s)	479, 607, 808, 977, 1735, 2796
AflII	CTTAAG	1 cut(s)	863
AflIII	ACRYGT	1 cut(s)	197
AhlI	ACTAGT	1 cut(s)	2414
AjnI	CCWGG	4 cut(s)	579, 606, 1779, 1814
AjuI	GAANNNNNNNTTGG	2 cut(s)	964, 996
AluBI	AGCT	8 cut(s)	238, 249, 319, 1639, 1992, 2056, 2511, 2565
AluI	AGCT	8 cut(s)	238, 249, 319, 1639, 1992, 2056, 2511, 2565
Alw21I	GWGCWC	3 cut(s)	19, 2000, 2783
Alw26I	GTCTC	5 cut(s)	57, 566, 708, 859, 1410
AlwI	GGATC	8 cut(s)	140, 1617, 2151, 2360, 2373, 2381, 2394, 2717
AlwNI	CAGNNNCTG	3 cut(s)	284, 952, 2273
Ama87I	CYCGRG	3 cut(s)	416, 448, 698
Aor13HI	TCCGGA	1 cut(s)	2465
AoxI	GGCC	7 cut(s)	223, 609, 691, 948, 1712, 1777, 2684
ApeKI	GCWGC	6 cut(s)	135, 186, 207, 210, 278, 1269
ApoI	RAATTY	9 cut(s)	79, 125, 484, 718, 758, 1980, 2311, 2515, 2580
ArsI	GACNNNNNNTTYG	2 cut(s)	715, 747
AseI	ATTAAT	1 cut(s)	636
Asp700I	GAANNNNTTC	2 cut(s)	2114, 2189
Asp718I	GGTACC	1 cut(s)	429
AspA2I	CCTAGG	1 cut(s)	1913
AspLEI	GCGC	1 cut(s)	2222
AsuHPI	GGTGA	3 cut(s)	326, 1453, 2837
AvaI	CYCGRG	3 cut(s)	416, 448, 698
AvrII	CCTAGG	1 cut(s)	1913
BalI	TGGCCA	2 cut(s)	1714, 1779
BamHI	GGATCC	2 cut(s)	2365, 2386
BanI	GGYRCC	1 cut(s)	429
BarI	GAAGNNNNNNTAC	2 cut(s)	413, 445
BbsI	GAAGAC	3 cut(s)	186, 2154, 2225
Bbv12I	GWGCWC	3 cut(s)	19, 2000, 2783
BbvCI	CCTCAGC	1 cut(s)	2328
BbvI	GCAGC	6 cut(s)	147, 173, 194, 222, 290, 1281
BccI	CCATC	7 cut(s)	401, 510, 1472, 2610, 2701, 2789, 2869
BceAI	ACGGC	1 cut(s)	825
BciT130I	CCWGG	4 cut(s)	581, 608, 1781, 1816
BciVI	GTATCC	1 cut(s)	1919
BcoDI	GTCTC	5 cut(s)	57, 566, 708, 859, 1410
BcuI	ACTAGT	1 cut(s)	2414
BfaI	CTAG	4 cut(s)	1241, 1805, 1914, 2415
BfmI	CTRYAG	1 cut(s)	208
BfrI	CTTAAG	1 cut(s)	863
BfuAI	ACCTGC	1 cut(s)	2813
BfuI	GTATCC	1 cut(s)	1919
BglII	AGATCT	1 cut(s)	2245
BisI	GCNGC	7 cut(s)	136, 187, 208, 211, 279, 691, 1270
BlnI	CCTAGG	1 cut(s)	1913
BlsI	GCNGC	7 cut(s)	137, 188, 209, 212, 280, 692, 1271
Bme1390I	CCNGG	4 cut(s)	581, 608, 1781, 1816
BmeT110I	CYCGRG	3 cut(s)	416, 448, 698
BmiI	GGNNCC	8 cut(s)	431, 468, 841, 1022, 1699, 2125, 2367, 2388
BmrFI	CCNGG	4 cut(s)	581, 608, 1781, 1816
BmsI	GCATC	5 cut(s)	277, 1073, 1145, 1460, 2809
BpiI	GAAGAC	3 cut(s)	186, 2154, 2225
BpmI	CTGGAG	1 cut(s)	2142
Bpu10I	CCTNAGC	4 cut(s)	18, 245, 602, 2328
BpuEI	CTTGAG	2 cut(s)	385, 1870
BsaBI	GATNNNNATC	3 cut(s)	2364, 2385, 2799
BsaHI	GRCGYC	1 cut(s)	1341
BsaI	GGTCTC	1 cut(s)	566
BsaJI	CCNNGG	6 cut(s)	580, 1095, 1167, 1913, 2279, 2369
BsaWI	WCCGGW	3 cut(s)	1121, 2465, 2548
BsaXI	ACNNNNNCTCC	4 cut(s)	274, 304, 1103, 1133
Bsc4I	CCNNNNNNNGG	6 cut(s)	479, 607, 808, 977, 1735, 2796
Bse1I	ACTGG	3 cut(s)	841, 2024, 2200
Bse3DI	GCAATG	2 cut(s)	857, 2765
Bse8I	GATNNNNATC	3 cut(s)	2364, 2385, 2799
BseAI	TCCGGA	1 cut(s)	2465
BseBI	CCWGG	4 cut(s)	581, 608, 1781, 1816
BseDI	CCNNGG	6 cut(s)	580, 1095, 1167, 1913, 2279, 2369
BseGI	GGATG	3 cut(s)	393, 1464, 2786
BseJI	GATNNNNATC	3 cut(s)	2364, 2385, 2799
BseLI	CCNNNNNNNGG	6 cut(s)	479, 607, 808, 977, 1735, 2796
BseMI	GCAATG	2 cut(s)	857, 2765
BseMII	CTCAG	8 cut(s)	32, 1560, 1787, 1817, 2015, 2342, 2639, 2789
BseNI	ACTGG	3 cut(s)	841, 2024, 2200
BseRI	GAGGAG	3 cut(s)	116, 119, 462
BseXI	GCAGC	6 cut(s)	147, 173, 194, 222, 290, 1281
BsgI	GTGCAG	1 cut(s)	938
Bsh1236I	CGCG	1 cut(s)	199
BshFI	GGCC	7 cut(s)	225, 611, 693, 950, 1714, 1779, 2686
BshNI	GGYRCC	1 cut(s)	429
BsiHKAI	GWGCWC	3 cut(s)	19, 2000, 2783
BsiHKCI	CYCGRG	3 cut(s)	416, 448, 698
BsiSI	CCGG	4 cut(s)	1061, 1122, 2466, 2549
BslFI	GGGAC	4 cut(s)	22, 452, 2261, 2763
BslI	CCNNNNNNNGG	6 cut(s)	479, 607, 808, 977, 1735, 2796
BsmAI	GTCTC	5 cut(s)	57, 566, 708, 859, 1410
BsmFI	GGGAC	4 cut(s)	22, 452, 2261, 2763
BsmI	GAATGC	3 cut(s)	1272, 1836, 2328
BsnI	GGCC	7 cut(s)	225, 611, 693, 950, 1714, 1779, 2686
Bso31I	GGTCTC	1 cut(s)	566
BsoBI	CYCGRG	3 cut(s)	416, 448, 698
Bsp1286I	GDGCHC	3 cut(s)	19, 2000, 2783
Bsp13I	TCCGGA	1 cut(s)	2465
Bsp19I	CCATGG	1 cut(s)	2369
BspACI	CCGC	2 cut(s)	109, 690
BspANI	GGCC	7 cut(s)	225, 611, 693, 950, 1714, 1779, 2686
BspCNI	CTCAG	8 cut(s)	31, 1561, 1788, 1818, 2014, 2341, 2640, 2788
BspEI	TCCGGA	1 cut(s)	2465
BspFNI	CGCG	1 cut(s)	199
BspLI	GGNNCC	8 cut(s)	431, 468, 841, 1022, 1699, 2125, 2367, 2388
BspMAI	CTGCAG	1 cut(s)	212
BspMI	ACCTGC	1 cut(s)	2813
BspPI	GGATC	8 cut(s)	140, 1617, 2151, 2360, 2373, 2381, 2394, 2717
BspT107I	GGYRCC	1 cut(s)	429
BspTI	CTTAAG	1 cut(s)	863
BspTNI	GGTCTC	1 cut(s)	566
BsrBI	CCGCTC	1 cut(s)	109
BsrDI	GCAATG	2 cut(s)	857, 2765
BsrI	ACTGG	3 cut(s)	841, 2024, 2200
BssECI	CCNNGG	6 cut(s)	580, 1095, 1167, 1913, 2279, 2369
BssNAI	GTATAC	1 cut(s)	2204
BssNI	GRCGYC	1 cut(s)	1341
BssT1I	CCWWGG	5 cut(s)	1095, 1167, 1913, 2279, 2369
Bst1107I	GTATAC	1 cut(s)	2204
Bst2UI	CCWGG	4 cut(s)	581, 608, 1781, 1816
Bst4CI	ACNGT	6 cut(s)	1014, 2064, 2078, 2136, 2217, 2574
Bst6I	CTCTTC	4 cut(s)	571, 711, 1856, 2475
BstACI	GRCGYC	1 cut(s)	1341
BstAFI	CTTAAG	1 cut(s)	863
BstAPI	GCANNNNNTGC	2 cut(s)	287, 952
BstC8I	GCNNGC	2 cut(s)	94, 948
BstDSI	CCRYGG	1 cut(s)	2369
BstENI	CCTNNNNNAGG	1 cut(s)	605
BstF5I	GGATG	3 cut(s)	393, 1464, 2786
BstFNI	CGCG	1 cut(s)	199
BstHHI	GCGC	1 cut(s)	2222
BstMAI	GTCTC	5 cut(s)	57, 566, 708, 859, 1410
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 287, 952, 1499
BstNI	CCWGG	4 cut(s)	581, 608, 1781, 1816
BstNSI	RCATGY	1 cut(s)	306
BstSCI	CCNGG	4 cut(s)	579, 606, 1779, 1814
BstSFI	CTRYAG	1 cut(s)	208
BstUI	CGCG	1 cut(s)	199
BstV1I	GCAGC	6 cut(s)	147, 173, 194, 222, 290, 1281
BstV2I	GAAGAC	3 cut(s)	186, 2154, 2225
BstX2I	RGATCY	4 cut(s)	1609, 2245, 2365, 2386
BstXI	CCANNNNNNTGG	1 cut(s)	2609
BstYI	RGATCY	4 cut(s)	1609, 2245, 2365, 2386
BstZ17I	GTATAC	1 cut(s)	2204
BsuI	GTATCC	1 cut(s)	1919
BsuRI	GGCC	7 cut(s)	225, 611, 693, 950, 1714, 1779, 2686
BtgI	CCRYGG	1 cut(s)	2369
BtsCI	GGATG	3 cut(s)	393, 1464, 2786
BtsIMutI	CAGTG	5 cut(s)	1793, 2141, 2193, 2645, 2783
BveI	ACCTGC	1 cut(s)	2813
Cac8I	GCNNGC	2 cut(s)	94, 948
CaiI	CAGNNNCTG	3 cut(s)	284, 952, 2273
CfoI	GCGC	1 cut(s)	2222
CseI	GACGC	2 cut(s)	205, 1330
Csp6I	GTAC	4 cut(s)	203, 430, 798, 2399
CspCI	CAANNNNNGTGG	2 cut(s)	1974, 2009
CviQI	GTAC	4 cut(s)	203, 430, 798, 2399
DraI	TTTAAA	1 cut(s)	546
EaeI	YGGCCR	2 cut(s)	1712, 1777
Eam1104I	CTCTTC	4 cut(s)	571, 711, 1856, 2475
EarI	CTCTTC	4 cut(s)	571, 711, 1856, 2475
Eco130I	CCWWGG	5 cut(s)	1095, 1167, 1913, 2279, 2369
Eco31I	GGTCTC	1 cut(s)	566
Eco57I	CTGAAG	3 cut(s)	870, 1751, 1880
Eco88I	CYCGRG	3 cut(s)	416, 448, 698
EcoNI	CCTNNNNNAGG	1 cut(s)	605
EcoO109I	RGGNCCY	2 cut(s)	949, 1020
EcoRI	GAATTC	1 cut(s)	125
EcoRII	CCWGG	4 cut(s)	579, 606, 1779, 1814
EcoT14I	CCWWGG	5 cut(s)	1095, 1167, 1913, 2279, 2369
ErhI	CCWWGG	5 cut(s)	1095, 1167, 1913, 2279, 2369
FalI	AAGNNNNNCTT	2 cut(s)	105, 137
FaqI	GGGAC	4 cut(s)	22, 452, 2261, 2763
FauNDI	CATATG	2 cut(s)	1717, 2376
FblI	GTMKAC	2 cut(s)	1943, 2203
Fnu4HI	GCNGC	7 cut(s)	136, 187, 208, 211, 279, 691, 1270
FokI	GGATG	3 cut(s)	380, 1451, 2773
Fsp4HI	GCNGC	7 cut(s)	136, 187, 208, 211, 279, 691, 1270
FspBI	CTAG	4 cut(s)	1241, 1805, 1914, 2415
GlaI	GCGC	1 cut(s)	2221
GluI	GCNGC	7 cut(s)	136, 187, 208, 211, 279, 691, 1270
GsuI	CTGGAG	1 cut(s)	2142
HaeIII	GGCC	7 cut(s)	225, 611, 693, 950, 1714, 1779, 2686
HapII	CCGG	4 cut(s)	1061, 1122, 2466, 2549
HgaI	GACGC	2 cut(s)	205, 1330
HhaI	GCGC	1 cut(s)	2222
Hin1I	GRCGYC	1 cut(s)	1341
Hin6I	GCGC	1 cut(s)	2220
HinP1I	GCGC	1 cut(s)	2220
HincII	GTYRAC	4 cut(s)	742, 1791, 1944, 2535
HindII	GTYRAC	4 cut(s)	742, 1791, 1944, 2535
HindIII	AAGCTT	4 cut(s)	236, 1637, 1990, 2563
HinfI	GANTC	7 cut(s)	701, 1315, 1435, 1871, 2527, 2800, 2880
HpaII	CCGG	4 cut(s)	1061, 1122, 2466, 2549
HphI	GGTGA	3 cut(s)	326, 1453, 2837
HpyCH4III	ACNGT	6 cut(s)	1014, 2064, 2078, 2136, 2217, 2574
HpyCH4IV	ACGT	2 cut(s)	725, 1668
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 287, 952, 1499
HpySE526I	ACGT	2 cut(s)	725, 1668
Hsp92I	GRCGYC	1 cut(s)	1341
HspAI	GCGC	1 cut(s)	2220
Kpn2I	TCCGGA	1 cut(s)	2465
KpnI	GGTACC	1 cut(s)	433
LmnI	GCTCC	6 cut(s)	106, 295, 504, 845, 2053, 2123
Lsp1109I	GCAGC	6 cut(s)	147, 173, 194, 222, 290, 1281
LweI	GCATC	5 cut(s)	277, 1073, 1145, 1460, 2809
MaeI	CTAG	4 cut(s)	1241, 1805, 1914, 2415
MaeII	ACGT	2 cut(s)	725, 1668
MaeIII	GTNAC	7 cut(s)	726, 805, 936, 1224, 2348, 2574, 2597
MbiI	CCGCTC	1 cut(s)	109
MflI	RGATCY	4 cut(s)	1609, 2245, 2365, 2386
MhlI	GDGCHC	3 cut(s)	19, 2000, 2783
MlsI	TGGCCA	2 cut(s)	1714, 1779
MluI	ACGCGT	1 cut(s)	197
MluNI	TGGCCA	2 cut(s)	1714, 1779
MlyI	GAGTC	1 cut(s)	710
MmeI	TCCRAC	4 cut(s)	941, 1587, 2523, 2750
Mox20I	TGGCCA	2 cut(s)	1714, 1779
MroI	TCCGGA	1 cut(s)	2465
MroXI	GAANNNNTTC	2 cut(s)	2114, 2189
MscI	TGGCCA	2 cut(s)	1714, 1779
MslI	CAYNNNNRTG	2 cut(s)	2607, 2873
Msp20I	TGGCCA	2 cut(s)	1714, 1779
MspCI	CTTAAG	1 cut(s)	863
MspI	CCGG	4 cut(s)	1061, 1122, 2466, 2549
MspR9I	CCNGG	4 cut(s)	581, 608, 1781, 1816
Mva1269I	GAATGC	3 cut(s)	1272, 1836, 2328
MvaI	CCWGG	4 cut(s)	581, 608, 1781, 1816
MvnI	CGCG	1 cut(s)	199
MwoI	GCNNNNNNNGC	4 cut(s)	29, 287, 952, 1499
NcoI	CCATGG	1 cut(s)	2369
NdeI	CATATG	2 cut(s)	1717, 2376
NlaIV	GGNNCC	8 cut(s)	431, 468, 841, 1022, 1699, 2125, 2367, 2388
NmuCI	GTSAC	2 cut(s)	805, 1224
NspI	RCATGY	1 cut(s)	306
PaeR7I	CTCGAG	1 cut(s)	416
PaqCI	CACCTGC	1 cut(s)	2813
PctI	GAATGC	3 cut(s)	1272, 1836, 2328
PdmI	GAANNNNTTC	2 cut(s)	2114, 2189
PfeI	GAWTC	6 cut(s)	1315, 1435, 1871, 2527, 2800, 2880
PflMI	CCANNNNNTGG	1 cut(s)	977
PfoI	TCCNGGA	1 cut(s)	1814
PkrI	GCNGC	7 cut(s)	137, 188, 209, 212, 280, 692, 1271
PleI	GAGTC	1 cut(s)	709
PpsI	GAGTC	1 cut(s)	709
PpuMI	RGGWCCY	1 cut(s)	1020
PshBI	ATTAAT	1 cut(s)	636
PsiI	TTATAA	1 cut(s)	2917
Psp5II	RGGWCCY	1 cut(s)	1020
Psp6I	CCWGG	4 cut(s)	579, 606, 1779, 1814
PspGI	CCWGG	4 cut(s)	579, 606, 1779, 1814
PspN4I	GGNNCC	8 cut(s)	431, 468, 841, 1022, 1699, 2125, 2367, 2388
PspPPI	RGGWCCY	1 cut(s)	1020
PstI	CTGCAG	1 cut(s)	212
PstNI	CAGNNNCTG	3 cut(s)	284, 952, 2273
PsuI	RGATCY	4 cut(s)	1609, 2245, 2365, 2386
RsaI	GTAC	4 cut(s)	204, 431, 799, 2400
RsaNI	GTAC	4 cut(s)	203, 430, 798, 2399
RseI	CAYNNNNRTG	2 cut(s)	2607, 2873
SalI	GTCGAC	1 cut(s)	1942
SatI	GCNGC	7 cut(s)	136, 187, 208, 211, 279, 691, 1270
SchI	GAGTC	1 cut(s)	710
ScrFI	CCNGG	4 cut(s)	581, 608, 1781, 1816
SduI	GDGCHC	3 cut(s)	19, 2000, 2783
SfaNI	GCATC	5 cut(s)	277, 1073, 1145, 1460, 2809
SfcI	CTRYAG	1 cut(s)	208
Sfr274I	CTCGAG	1 cut(s)	416
SlaI	CTCGAG	1 cut(s)	416
SmiMI	CAYNNNNRTG	2 cut(s)	2607, 2873
SmlI	CTYRAG	4 cut(s)	364, 416, 863, 1885
SmoI	CTYRAG	4 cut(s)	364, 416, 863, 1885
SpeI	ACTAGT	1 cut(s)	2414
SsiI	CCGC	2 cut(s)	109, 690
SspI	AATATT	1 cut(s)	793
SspMI	CTAG	4 cut(s)	1241, 1805, 1914, 2415
StyD4I	CCNGG	4 cut(s)	579, 606, 1779, 1814
StyI	CCWWGG	5 cut(s)	1095, 1167, 1913, 2279, 2369
TaaI	ACNGT	6 cut(s)	1014, 2064, 2078, 2136, 2217, 2574
TaiI	ACGT	2 cut(s)	728, 1671
TaqI	TCGA	5 cut(s)	417, 491, 1400, 1943, 2097
TaqII	GACCGA	1 cut(s)	2648
TauI	GCSGC	1 cut(s)	693
TfiI	GAWTC	6 cut(s)	1315, 1435, 1871, 2527, 2800, 2880
TscAI	CASTG	5 cut(s)	1800, 2141, 2200, 2652, 2783
TseFI	GTSAC	2 cut(s)	805, 1224
TseI	GCWGC	6 cut(s)	135, 186, 207, 210, 278, 1269
Tsp45I	GTSAC	2 cut(s)	805, 1224
TspGWI	ACGGA	1 cut(s)	1457
TspRI	CASTG	5 cut(s)	1800, 2141, 2200, 2652, 2783
Van91I	CCANNNNNTGG	1 cut(s)	977
Vha464I	CTTAAG	1 cut(s)	863
VspI	ATTAAT	1 cut(s)	636
XagI	CCTNNNNNAGG	1 cut(s)	605
XapI	RAATTY	9 cut(s)	79, 125, 484, 718, 758, 1980, 2311, 2515, 2580
XceI	RCATGY	1 cut(s)	306
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1599
XhoI	CTCGAG	1 cut(s)	416
XmaJI	CCTAGG	1 cut(s)	1913
XmiI	GTMKAC	2 cut(s)	1943, 2203
XmnI	GAANNNNTTC	2 cut(s)	2114, 2189
XspI	CTAG	4 cut(s)	1241, 1805, 1914, 2415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.