Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000292

Physical Location & Seq

Genomic Coordinates Forward (+)

38417174 .. 38419427

Gene Structure 2254 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1268300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCCAATCCTCAACTGTACATGAACGCACGCCTTTCTCCCATCTCTCTAACTTATTTTGGGTTTTGTCTGGGAAATGGAAACTACACCGTAAACCTCCATTTTGCAGAGATAATGTTTAGAAATGGCAAAACATATAAAAGCTTGGGAAGGCGCATATTCGATATTTACATTCAGGGAAAACTAGTGAAGAAGGACTTCAATATCATGGATGAAGCTGGCGTGTTTGGTGATGTAGTCATAAAGAACTTTACTGCTCCTGTAACTAATAATACATTGGAGATTCGTTTCTATTGGGCCGGAAGAGGGACGACAGGCATCCCTTTTAGAGGAGTCTATGGTCCTCTTATTTCAGCTATTTCAGTAGACCCAAACTTTGATTCGCCGCCAAAACCTGTAAGTGACACATCAACTGGTGGAAGTGGCGTGCCTGTAGGTGTCGTGGTTGGAATTGTGGTTGGAGGAGTCTTCATTATACTACTGATATTTGGTATTCTTTGGAAGAGAGACAACAAAAGACATTGGAGGATGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

179

Amino Acids

19.74

Weight (kDa)

9.79

Isoelectric Point (pI)

31.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin	PF11721	3 - 120	3e-37	Malectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53420 AT3G14840
fragaria_vesca	FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17851
malus_domestica	MD03G1246600.v1.1 MD06G1045200.v1.1 MD06G1045400.v1.1 MD11G1267800.v1.1 MD11G1267900.v1.1 MD11G1268100.v1.1 MD11G1268300.v1.1 MD11G1268500.v1.1 MD11G1268600.v1.1
prunus_persica	Prupe.4G157700_v2.0.a1 Prupe.4G157700_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1
pyrus_communis	pycom03g19540 pycom11g23600 pycom11g23630 pycom11g23690 pycom11g23720 pycom11g23730 pycom11g23740 pycom11g23750
rosa_chinensis	RchiOBHm_Chr0c40g0503411 RchiOBHm_Chr0c40g0503421 RchiOBHm_Chr5g0029631 RchiOBHm_Chr5g0029661 RchiOBHm_Chr5g0029701 RchiOBHm_Chr5g0029741 RchiOBHm_Chr5g0029771 RchiOBHm_Chr5g0029781 RchiOBHm_Chr5g0029811 RchiOBHm_Chr5g0029851 RchiOBHm_Chr5g0029871 RchiOBHm_Chr5g0029891 RchiOBHm_Chr7g0222221
rosa_laevigata	RLG00000017380 RLG00000032873 RLG00000033188 RLG00000033190 RLG00000033192 RLG00000033193 RLG00000033194 RLG00000033196 RLG00000033199 RLG00000033238
rosa_multiflora	Rmu_co8359987.1_g000001 Rmu_co8444909.1_g000001 Rmu_sc0001608.1_g000007 Rmu_sc0001608.1_g000009 Rmu_sc0001608.1_g000013 Rmu_sc0001608.1_g000018 Rmu_sc0001608.1_g000023 Rmu_sc0001608.1_g000040 Rmu_sc0003238.1_g000016 Rmu_sc0003368.1_g000026 Rmu_sc0003368.1_g000034 Rmu_sc0003368.1_g000043 Rmu_sc0003368.1_g000047 Rmu_sc0003368.1_g000052 Rmu_sc0003368.1_g000054 Rmu_sc0004963.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050080 Rroxscaffold_1G00050090 Rroxscaffold_1G00050110 Rroxscaffold_1G00050120 Rroxscaffold_1G00050180 Rroxscaffold_1G00050190 Rroxscaffold_1G00050220 Rroxscaffold_1G00050270 Rroxscaffold_1G00050300
rosa_rugosa	Rorug04G0065200 Rorug05G0114900 Rorug05G0115000 Rorug05G0115100 Rorug05G0120100 Rorug05G0238900
rosa_samantha	Rh5AG207800 Rh5AG208000 Rh5AG208300 Rh5AG208400 Rh5AG208800 Rh5AG294900 Rh5AG295000 Rh5AG295400 Rh5CG230400 Rh7AG347800
rosa_wichuraiana	Rw0G005370 Rw0G012460 Rw0G019060 Rw5G018910 Rw5G018920 Rw5G018930 Rw5G018940 Rw5G018960 Rw5G018970 Rw5G018980 Rw5G018990 Rw5G019000 Rw7G029840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	366
AciI	CCGC	1 cut(s)	386
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	2 cut(s)	306, 329
AgsI	TTSAA	1 cut(s)	202
AhlI	ACTAGT	1 cut(s)	184
AjuI	GAANNNNNNNTTGG	2 cut(s)	364, 396
AluBI	AGCT	3 cut(s)	144, 218, 356
AluI	AGCT	3 cut(s)	144, 218, 356
Alw26I	GTCTC	1 cut(s)	501
AoxI	GGCC	2 cut(s)	3, 297
ArsI	GACNNNNNNTTYG	2 cut(s)	359, 391
Asp700I	GAANNNNTTC	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	2 cut(s)	297, 341
AsuHPI	GGTGA	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	341
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	460
BccI	CCATC	1 cut(s)	50
BcoDI	GTCTC	1 cut(s)	501
BcuI	ACTAGT	1 cut(s)	184
BfaI	CTAG	1 cut(s)	185
BfmI	CTRYAG	1 cut(s)	432
BisI	GCNGC	1 cut(s)	386
BlsI	GCNGC	1 cut(s)	387
Bme18I	GGWCC	1 cut(s)	341
BmgT120I	GGNCC	2 cut(s)	297, 341
BmsI	GCATC	1 cut(s)	327
BpiI	GAAGAC	1 cut(s)	460
Bsc4I	CCNNNNNNNGG	2 cut(s)	306, 329
Bse1I	ACTGG	1 cut(s)	418
BseGI	GGATG	3 cut(s)	217, 318, 534
BseLI	CCNNNNNNNGG	2 cut(s)	306, 329
BseNI	ACTGG	1 cut(s)	418
BseRI	GAGGAG	2 cut(s)	345, 477
BshFI	GGCC	2 cut(s)	5, 299
BsiSI	CCGG	1 cut(s)	300
BslFI	GGGAC	1 cut(s)	322
BslI	CCNNNNNNNGG	2 cut(s)	306, 329
BsmAI	GTCTC	1 cut(s)	501
BsmFI	GGGAC	1 cut(s)	322
BsnI	GGCC	2 cut(s)	5, 299
Bsp1407I	TGTACA	1 cut(s)	18
BspACI	CCGC	1 cut(s)	386
BspANI	GGCC	2 cut(s)	5, 299
BsrGI	TGTACA	1 cut(s)	18
BsrI	ACTGG	1 cut(s)	418
Bst4CI	ACNGT	2 cut(s)	18, 91
Bst6I	CTCTTC	2 cut(s)	298, 497
BstAUI	TGTACA	1 cut(s)	18
BstC8I	GCNNGC	3 cut(s)	31, 220, 428
BstENI	CCTNNNNNAGG	1 cut(s)	327
BstF5I	GGATG	3 cut(s)	217, 318, 534
BstHHI	GCGC	1 cut(s)	156
BstMAI	GTCTC	1 cut(s)	501
BstSFI	CTRYAG	1 cut(s)	432
BstV2I	GAAGAC	1 cut(s)	460
BsuRI	GGCC	2 cut(s)	5, 299
BtsCI	GGATG	3 cut(s)	217, 318, 534
Cac8I	GCNNGC	3 cut(s)	31, 220, 428
CfoI	GCGC	1 cut(s)	156
Cfr13I	GGNCC	2 cut(s)	297, 341
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	2 cut(s)	22, 208
CviJI	RGCY	5 cut(s)	5, 144, 218, 299, 356
CviKI_1	RGCY	5 cut(s)	5, 144, 218, 299, 356
CviQI	GTAC	1 cut(s)	19
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	298, 497
EarI	CTCTTC	2 cut(s)	298, 497
Eco47I	GGWCC	1 cut(s)	341
EcoNI	CCTNNNNNAGG	1 cut(s)	327
FaeI	CATG	2 cut(s)	25, 211
FaiI	YATR	8 cut(s)	23, 136, 138, 158, 209, 242, 339, 476
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	2 cut(s)	21, 207
FblI	GTMKAC	1 cut(s)	366
Fnu4HI	GCNGC	1 cut(s)	386
FokI	GGATG	2 cut(s)	224, 305
Fsp4HI	GCNGC	1 cut(s)	386
FspBI	CTAG	1 cut(s)	185
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	1 cut(s)	386
HaeIII	GGCC	2 cut(s)	5, 299
HapII	CCGG	1 cut(s)	300
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	2 cut(s)	25, 211
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	142
HinfI	GANTC	4 cut(s)	283, 333, 380, 465
HpaII	CCGG	1 cut(s)	300
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	2 cut(s)	94, 367
Hpy8I	GTNNAC	2 cut(s)	94, 367
HpyAV	CCTTC	2 cut(s)	144, 187
HpyCH4III	ACNGT	2 cut(s)	18, 91
HpyCH4V	TGCA	1 cut(s)	107
Hsp92II	CATG	2 cut(s)	25, 211
HspAI	GCGC	1 cut(s)	154
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	9 cut(s)	56, 161, 204, 273, 300, 313, 399, 408, 444
LweI	GCATC	1 cut(s)	327
MaeI	CTAG	1 cut(s)	185
MaeIII	GTNAC	2 cut(s)	262, 401
MboII	GAAGA	4 cut(s)	202, 315, 460, 514
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	450
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	342, 474
MmeI	TCCRAC	2 cut(s)	427, 439
MnlI	CCTC	7 cut(s)	21, 107, 299, 323, 354, 455, 519
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	197
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	300
NlaIII	CATG	2 cut(s)	25, 211
NmuCI	GTSAC	1 cut(s)	401
PdmI	GAANNNNTTC	1 cut(s)	197
PfeI	GAWTC	2 cut(s)	283, 380
PkrI	GCNGC	1 cut(s)	387
PleI	GAGTC	2 cut(s)	341, 473
PpsI	GAGTC	2 cut(s)	341, 473
PspPI	GGNCC	2 cut(s)	297, 341
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SatI	GCNGC	1 cut(s)	386
Sau96I	GGNCC	2 cut(s)	297, 341
SchI	GAGTC	2 cut(s)	342, 474
SetI	ASST	6 cut(s)	99, 146, 220, 358, 397, 439
SfaNI	GCATC	1 cut(s)	327
SfcI	CTRYAG	1 cut(s)	432
SinI	GGWCC	1 cut(s)	341
SpeI	ACTAGT	1 cut(s)	184
Sse9I	AATT	1 cut(s)	450
SsiI	CCGC	1 cut(s)	386
SspMI	CTAG	1 cut(s)	185
TaaI	ACNGT	2 cut(s)	18, 91
TaqI	TCGA	1 cut(s)	162
TasI	AATT	1 cut(s)	450
TatI	WGTACW	1 cut(s)	18
TauI	GCSGC	1 cut(s)	388
TfiI	GAWTC	2 cut(s)	283, 380
TseFI	GTSAC	1 cut(s)	401
Tsp45I	GTSAC	1 cut(s)	401
TspDTI	ATGAA	3 cut(s)	38, 228, 460
VpaK11BI	GGWCC	1 cut(s)	341
XagI	CCTNNNNNAGG	1 cut(s)	327
XmiI	GTMKAC	1 cut(s)	366
XmnI	GAANNNNTTC	1 cut(s)	197
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.