Rh5AG208000

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000292
Physical Location & Seq
Reverse (-)
24526371 .. 24533900
7530 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG208000.1

Sequence Viewer

Length: 411 bp
ATGGCGGCATGTAAGAATGCACTTCTTCTAAAAGAGAGAGCAAGTTTGTTGGACCTGGTGGATCCAAGGTTGGACTCAGAGTTTAACAAAGCAGAGATGATTACTACGATCAATATTGCTCTCCTTTGTGCCAATACTTCTTCAGCAGTTAGACCTGCCATGTCTTCAGTGGTAAGCATGCTTGAAGGTAAGTCTTCTGTTCAAGAGGTGGTCTTTGATCCAAACGCCTCAATTAATGAAATCAATGCGATGAGGAAACATTTTCAATCCAATATTGAAGAAAACAATGGTGACCCTGAGAGTCAGAAACAAACTATGTCGATTGAAGGGTCGTGGACTGCTTCATCTACATCTGCTCAAGACCTCTATCCAGTCCGCCCTGATTCATATTATTGGGAGAATAGAAATTAG

Protein Analysis

136

Amino Acids

15.08

Weight (kDa)

4.73

Isoelectric Point (pI)

61.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000292)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53420 AT3G14840
fragaria_vesca FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17851
malus_domestica MD03G1246600.v1.1 MD06G1045200.v1.1 MD06G1045400.v1.1 MD11G1267800.v1.1 MD11G1267900.v1.1 MD11G1268100.v1.1 MD11G1268300.v1.1 MD11G1268500.v1.1 MD11G1268600.v1.1
prunus_persica Prupe.4G157700_v2.0.a1 Prupe.4G157700_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1
pyrus_communis pycom03g19540 pycom11g23600 pycom11g23630 pycom11g23690 pycom11g23720 pycom11g23730 pycom11g23740 pycom11g23750
rosa_chinensis RchiOBHm_Chr0c40g0503411 RchiOBHm_Chr0c40g0503421 RchiOBHm_Chr5g0029631 RchiOBHm_Chr5g0029661 RchiOBHm_Chr5g0029701 RchiOBHm_Chr5g0029741 RchiOBHm_Chr5g0029771 RchiOBHm_Chr5g0029781 RchiOBHm_Chr5g0029811 RchiOBHm_Chr5g0029851 RchiOBHm_Chr5g0029871 RchiOBHm_Chr5g0029891 RchiOBHm_Chr7g0222221
rosa_laevigata RLG00000017380 RLG00000032873 RLG00000033188 RLG00000033190 RLG00000033192 RLG00000033193 RLG00000033194 RLG00000033196 RLG00000033199 RLG00000033238
rosa_multiflora Rmu_co8359987.1_g000001 Rmu_co8444909.1_g000001 Rmu_sc0001608.1_g000007 Rmu_sc0001608.1_g000009 Rmu_sc0001608.1_g000013 Rmu_sc0001608.1_g000018 Rmu_sc0001608.1_g000023 Rmu_sc0001608.1_g000040 Rmu_sc0003238.1_g000016 Rmu_sc0003368.1_g000026 Rmu_sc0003368.1_g000034 Rmu_sc0003368.1_g000043 Rmu_sc0003368.1_g000047 Rmu_sc0003368.1_g000052 Rmu_sc0003368.1_g000054 Rmu_sc0004963.1_g000001
rosa_roxburghii Rroxscaffold_1G00050080 Rroxscaffold_1G00050090 Rroxscaffold_1G00050110 Rroxscaffold_1G00050120 Rroxscaffold_1G00050180 Rroxscaffold_1G00050190 Rroxscaffold_1G00050220 Rroxscaffold_1G00050270 Rroxscaffold_1G00050300
rosa_rugosa Rorug04G0065200 Rorug05G0114900 Rorug05G0115000 Rorug05G0115100 Rorug05G0120100 Rorug05G0238900
rosa_samantha Rh5AG207800 Rh5AG208000 Rh5AG208300 Rh5AG208400 Rh5AG208800 Rh5AG294900 Rh5AG295000 Rh5AG295400 Rh5CG230400 Rh7AG347800
rosa_wichuraiana Rw0G005370 Rw0G012460 Rw0G019060 Rw5G018910 Rw5G018920 Rw5G018930 Rw5G018940 Rw5G018960 Rw5G018970 Rw5G018980 Rw5G018990 Rw5G019000 Rw7G029840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 163
AciI CCGC 2 cut(s) 5, 376
AclWI GGATC 3 cut(s) 56, 69, 212
AcuI CTGAAG 2 cut(s) 126, 150
AgsI TTSAA 5 cut(s) 185, 203, 266, 278, 326
AjnI CCWGG 1 cut(s) 54
AlwI GGATC 3 cut(s) 56, 69, 212
AseI ATTAAT 1 cut(s) 234
AspS9I GGNCC 1 cut(s) 52
AsuHPI GGTGA 1 cut(s) 302
AvaII GGWCC 1 cut(s) 52
BamHI GGATCC 1 cut(s) 61
BbsI GAAGAC 2 cut(s) 156, 186
BciT130I CCWGG 1 cut(s) 56
BfuAI ACCTGC 1 cut(s) 163
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 56
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 1 cut(s) 63
BmrFI CCNGG 1 cut(s) 56
BpiI GAAGAC 2 cut(s) 156, 186
BpuEI CTTGAG 1 cut(s) 342
BsaJI CCNNGG 1 cut(s) 65
Bse1I ACTGG 1 cut(s) 371
BseBI CCWGG 1 cut(s) 56
BseDI CCNNGG 1 cut(s) 65
BseMII CTCAG 2 cut(s) 90, 288
BseNI ACTGG 1 cut(s) 371
BsmI GAATGC 1 cut(s) 22
Bsp143I GATC 3 cut(s) 61, 108, 217
BspACI CCGC 2 cut(s) 5, 376
BspCNI CTCAG 2 cut(s) 89, 289
BspLI GGNNCC 1 cut(s) 63
BspMI ACCTGC 1 cut(s) 163
BspPI GGATC 3 cut(s) 56, 69, 212
BsrI ACTGG 1 cut(s) 371
BssECI CCNNGG 1 cut(s) 65
BssMI GATC 3 cut(s) 61, 108, 217
BssT1I CCWWGG 1 cut(s) 65
Bst2UI CCWGG 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 179
BstDEI CTNAG 2 cut(s) 76, 297
BstEII GGTNACC 1 cut(s) 290
BstKTI GATC 3 cut(s) 64, 111, 220
BstMBI GATC 3 cut(s) 61, 108, 217
BstNI CCWGG 1 cut(s) 56
BstNSI RCATGY 2 cut(s) 12, 181
BstPI GGTNACC 1 cut(s) 290
BstSCI CCNGG 1 cut(s) 54
BstV2I GAAGAC 2 cut(s) 156, 186
BstX2I RGATCY 1 cut(s) 61
BstYI RGATCY 1 cut(s) 61
BtgZI GCGATG 1 cut(s) 263
BtsIMutI CAGTG 1 cut(s) 174
BveI ACCTGC 1 cut(s) 163
Cac8I GCNNGC 1 cut(s) 179
Cfr13I GGNCC 1 cut(s) 52
CsiI ACCWGGT 1 cut(s) 54
CviAII CATG 3 cut(s) 9, 160, 178
DdeI CTNAG 2 cut(s) 76, 297
DpnI GATC 3 cut(s) 63, 110, 219
DpnII GATC 3 cut(s) 61, 108, 217
EciI GGCGGA 1 cut(s) 365
Eco130I CCWWGG 1 cut(s) 65
Eco47I GGWCC 1 cut(s) 52
Eco57I CTGAAG 2 cut(s) 126, 150
Eco91I GGTNACC 1 cut(s) 290
EcoO65I GGTNACC 1 cut(s) 290
EcoRII CCWGG 1 cut(s) 54
EcoT14I CCWWGG 1 cut(s) 65
ErhI CCWWGG 1 cut(s) 65
FaeI CATG 3 cut(s) 12, 163, 181
FaiI YATR 5 cut(s) 10, 161, 179, 317, 388
FatI CATG 3 cut(s) 8, 159, 177
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
Hin1II CATG 3 cut(s) 12, 163, 181
HinfI GANTC 3 cut(s) 74, 301, 383
HphI GGTGA 1 cut(s) 302
Hpy166II GTNNAC 1 cut(s) 336
Hpy188I TCNGA 2 cut(s) 79, 306
Hpy188III TCNNGA 2 cut(s) 203, 359
Hpy8I GTNNAC 1 cut(s) 336
HpyAV CCTTC 2 cut(s) 179, 320
HpyCH4V TGCA 1 cut(s) 20
HpyF3I CTNAG 2 cut(s) 76, 297
Hsp92II CATG 3 cut(s) 12, 163, 181
Kzo9I GATC 3 cut(s) 61, 108, 217
LpnPI CCDG 6 cut(s) 41, 68, 168, 309, 384, 393
MabI ACCWGGT 1 cut(s) 54
MaeIII GTNAC 1 cut(s) 290
MalI GATC 3 cut(s) 63, 110, 219
MboI GATC 3 cut(s) 61, 108, 217
MboII GAAGA 5 cut(s) 17, 132, 156, 186, 290
MflI RGATCY 1 cut(s) 61
MluCI AATT 2 cut(s) 231, 406
MlyI GAGTC 2 cut(s) 68, 310
MmeI TCCRAC 2 cut(s) 30, 51
MnlI CCTC 4 cut(s) 199, 238, 246, 374
MseI TTAA 2 cut(s) 84, 234
MspR9I CCNGG 1 cut(s) 56
Mva1269I GAATGC 1 cut(s) 22
MvaI CCWGG 1 cut(s) 56
NdeII GATC 3 cut(s) 61, 108, 217
NlaIII CATG 3 cut(s) 12, 163, 181
NlaIV GGNNCC 1 cut(s) 63
NmuCI GTSAC 1 cut(s) 290
NspI RCATGY 2 cut(s) 12, 181
PaeI GCATGC 1 cut(s) 181
PctI GAATGC 1 cut(s) 22
PfeI GAWTC 1 cut(s) 383
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 2 cut(s) 68, 309
PpsI GAGTC 2 cut(s) 68, 309
PshBI ATTAAT 1 cut(s) 234
Psp6I CCWGG 1 cut(s) 54
PspEI GGTNACC 1 cut(s) 290
PspGI CCWGG 1 cut(s) 54
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 1 cut(s) 52
PsuI RGATCY 1 cut(s) 61
SaqAI TTAA 2 cut(s) 84, 234
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 3 cut(s) 61, 108, 217
Sau96I GGNCC 1 cut(s) 52
SchI GAGTC 2 cut(s) 68, 310
ScrFI CCNGG 1 cut(s) 56
SetI ASST 6 cut(s) 57, 71, 157, 190, 210, 366
SexAI ACCWGGT 1 cut(s) 54
SinI GGWCC 1 cut(s) 52
SmlI CTYRAG 1 cut(s) 357
SmoI CTYRAG 1 cut(s) 357
SphI GCATGC 1 cut(s) 181
Sse9I AATT 2 cut(s) 231, 406
SsiI CCGC 2 cut(s) 5, 376
SspI AATATT 2 cut(s) 115, 274
StyD4I CCNGG 1 cut(s) 54
StyI CCWWGG 1 cut(s) 65
TaqI TCGA 1 cut(s) 320
TasI AATT 2 cut(s) 231, 406
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 383
Tru1I TTAA 2 cut(s) 84, 234
Tru9I TTAA 2 cut(s) 84, 234
TscAI CASTG 1 cut(s) 174
TseFI GTSAC 1 cut(s) 290
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 3 cut(s) 252, 333, 375
TspRI CASTG 1 cut(s) 174
VpaK11BI GGWCC 1 cut(s) 52
VspI ATTAAT 1 cut(s) 234
XceI RCATGY 2 cut(s) 12, 181
XcmI CCANNNNNNNNNTGG 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.