RCHIOBHM_CHR0C40G0503421

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_chinensis
Unknown
OG0000292
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1287 bp
ATGGTTGGAATTGTGGCTGGAGGAGTGTTCATAATATTAGTGATTTTATGTATTCTCTGGTGGAAAGGCTTCACAGGACCAGCAAATACTTTGGAACAAGATTTGAAGGGTGTGGACCTGCAGACTGGCAAATTTACCTTGAGGCAAATCAAAGCTGCCACGAACGACTTTGACATAGCGAACAAGATTGGAGAAGGTGGTTTTGGTCCTGTTTACAGGGGCCTTCTATCAGACAACACTGCAATTGCTGTTAAGAAGCTTTCAGCCAAATCGAAGCAAGGAAATCGTGAATTTGTGAATGAGATAGGCATGATTTCTGCTCTGCAACACCCTCACCTTGTCAAGCTTTATGGATGCTGTATTGAAGGAAATAACTTGTTGCTTGTCTATGAGTACATGGAAAACAATAGTCTTGCACGTGCTCTATTTGGGTATGCAAAGATATTATTTATACTCAAAAGAAACAGAGAATTCATTTCTTCAAACTACTTTTTATCAATGAAAGGCCCAAAAGAAAGTCAGGTGAAGTTGGATTGGCCAACAAGGCATAGGATTTGTGTTGGTATAGCCAGAGGTTTGACTTATCTCCATGAGGAATCAAGGTTGAAGATCGTTCATAGAGACATCAAAGCTACTAATGTGCTACTTGATAAAAATCTTTTCCCCAAGATATCTGACTTTGGATTGGCCAAGCTTGATGAAGACGATAATACCCACATAAGCACCCGGATTGCTGGAACTTTTGGTTATATGGCACCTGAATATGCAATGCGAGGTTATCTGACTGATAAAGCAGATGTTTATAGTTTCGGAATTCTTGTATTGGAAATGGTCAGTGGAAGGTGCAATACAACTTACCGCTCCAAGGAAGAATGTTTTTATCTTCTAGACTGGGCACTTCTTCTAAAAGAGAGAGCAAGTTTGTTGGACCTGGTGGATCCAAGGTTGGACTCAGAGTTTAACAAAGCAGAAATGATTAATACGATCAATATTGCTCTCCTTTGTGCTAATGCTTCTTCAGCAGTTAGGCCCGCCATGTCTTCAGTGGTGAGCATGCTTGACGGTAGAGCTTCTGTTCAGGAGGTGGTCTATGATCCAAACGCCTCGATTAATGAAATCAATGCGATGAGGAAACATTTTCAATCCAATATTGAAGAAAACAATGGTGACCCTGAGAGTCAGAGACAAACTATGTCAATTGAAGGGTCGTGGACTGCTTCATCTACATCTGCTCAAGACCTCTATCCAGTCCGCCCTGATTCATATTATTGGGAGAATAGAAATTAG

Protein Analysis

428

Amino Acids

48.05

Weight (kDa)

6.68

Isoelectric Point (pI)

37.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000292)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53420 AT3G14840
fragaria_vesca FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17851
malus_domestica MD03G1246600.v1.1 MD06G1045200.v1.1 MD06G1045400.v1.1 MD11G1267800.v1.1 MD11G1267900.v1.1 MD11G1268100.v1.1 MD11G1268300.v1.1 MD11G1268500.v1.1 MD11G1268600.v1.1
prunus_persica Prupe.4G157700_v2.0.a1 Prupe.4G157700_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1
pyrus_communis pycom03g19540 pycom11g23600 pycom11g23630 pycom11g23690 pycom11g23720 pycom11g23730 pycom11g23740 pycom11g23750
rosa_chinensis RchiOBHm_Chr0c40g0503411 RchiOBHm_Chr0c40g0503421 RchiOBHm_Chr5g0029631 RchiOBHm_Chr5g0029661 RchiOBHm_Chr5g0029701 RchiOBHm_Chr5g0029741 RchiOBHm_Chr5g0029771 RchiOBHm_Chr5g0029781 RchiOBHm_Chr5g0029811 RchiOBHm_Chr5g0029851 RchiOBHm_Chr5g0029871 RchiOBHm_Chr5g0029891 RchiOBHm_Chr7g0222221
rosa_laevigata RLG00000017380 RLG00000032873 RLG00000033188 RLG00000033190 RLG00000033192 RLG00000033193 RLG00000033194 RLG00000033196 RLG00000033199 RLG00000033238
rosa_multiflora Rmu_co8359987.1_g000001 Rmu_co8444909.1_g000001 Rmu_sc0001608.1_g000007 Rmu_sc0001608.1_g000009 Rmu_sc0001608.1_g000013 Rmu_sc0001608.1_g000018 Rmu_sc0001608.1_g000023 Rmu_sc0001608.1_g000040 Rmu_sc0003238.1_g000016 Rmu_sc0003368.1_g000026 Rmu_sc0003368.1_g000034 Rmu_sc0003368.1_g000043 Rmu_sc0003368.1_g000047 Rmu_sc0003368.1_g000052 Rmu_sc0003368.1_g000054 Rmu_sc0004963.1_g000001
rosa_roxburghii Rroxscaffold_1G00050080 Rroxscaffold_1G00050090 Rroxscaffold_1G00050110 Rroxscaffold_1G00050120 Rroxscaffold_1G00050180 Rroxscaffold_1G00050190 Rroxscaffold_1G00050220 Rroxscaffold_1G00050270 Rroxscaffold_1G00050300
rosa_rugosa Rorug04G0065200 Rorug05G0114900 Rorug05G0115000 Rorug05G0115100 Rorug05G0120100 Rorug05G0238900
rosa_samantha Rh5AG207800 Rh5AG208000 Rh5AG208300 Rh5AG208400 Rh5AG208800 Rh5AG294900 Rh5AG295000 Rh5AG295400 Rh5CG230400 Rh7AG347800
rosa_wichuraiana Rw0G005370 Rw0G012460 Rw0G019060 Rw5G018910 Rw5G018920 Rw5G018930 Rw5G018940 Rw5G018960 Rw5G018970 Rw5G018980 Rw5G018990 Rw5G019000 Rw7G029840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 126
AccB1I GGYRCC 1 cut(s) 754
AccBSI CCGCTC 1 cut(s) 861
AciI CCGC 3 cut(s) 859, 1032, 1252
AclWI GGATC 3 cut(s) 932, 945, 1088
AcoI YGGCCR 2 cut(s) 536, 687
AcsI RAATTY 4 cut(s) 131, 290, 470, 813
AcuI CTGAAG 2 cut(s) 1002, 1026
AcvI CACGTG 1 cut(s) 419
AfaI GTAC 1 cut(s) 395
AfiI CCNNNNNNNGG 1 cut(s) 865
AgsI TTSAA 7 cut(s) 106, 365, 483, 607, 1142, 1154, 1202
AjnI CCWGG 1 cut(s) 930
AjuI GAANNNNNNNTTGG 2 cut(s) 186, 218
AluBI AGCT 6 cut(s) 155, 259, 346, 632, 694, 1070
AluI AGCT 6 cut(s) 155, 259, 346, 632, 694, 1070
Alw21I GWGCWC 1 cut(s) 424
Alw26I GTCTC 2 cut(s) 615, 1177
AlwI GGATC 3 cut(s) 932, 945, 1088
AoxI GGCC 5 cut(s) 220, 505, 536, 687, 1028
ApeKI GCWGC 1 cut(s) 155
ApoI RAATTY 4 cut(s) 131, 290, 470, 813
AseI ATTAAT 2 cut(s) 978, 1110
Asp700I GAANNNNTTC 1 cut(s) 68
AspS9I GGNCC 7 cut(s) 77, 115, 206, 220, 506, 928, 1029
AsuC2I CCSGG 1 cut(s) 727
AsuHPI GGTGA 4 cut(s) 326, 535, 1060, 1178
AvaII GGWCC 4 cut(s) 77, 115, 206, 928
BaeGI GKGCMC 1 cut(s) 898
BalI TGGCCA 2 cut(s) 538, 689
BamHI GGATCC 1 cut(s) 937
BanI GGYRCC 1 cut(s) 754
BarI GAAGNNNNNNTAC 2 cut(s) 832, 864
BbrPI CACGTG 1 cut(s) 419
BbsI GAAGAC 2 cut(s) 708, 1032
Bbv12I GWGCWC 1 cut(s) 424
BbvI GCAGC 1 cut(s) 142
BcgI CGANNNNNNTGC 2 cut(s) 266, 300
BciT130I CCWGG 1 cut(s) 932
BcnI CCSGG 1 cut(s) 727
BcoDI GTCTC 2 cut(s) 615, 1177
BfaI CTAG 1 cut(s) 887
BfmI CTRYAG 1 cut(s) 119
BfuAI ACCTGC 1 cut(s) 126
BglI GCCNNNNNGGC 1 cut(s) 544
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
Bme1390I CCNGG 2 cut(s) 727, 932
Bme18I GGWCC 4 cut(s) 77, 115, 206, 928
BmgT120I GGNCC 7 cut(s) 77, 115, 206, 220, 506, 928, 1029
BmiI GGNNCC 3 cut(s) 221, 756, 939
BmrFI CCNGG 2 cut(s) 727, 932
BmrI ACTGGG 1 cut(s) 901
BmsI GCATC 1 cut(s) 344
BmuI ACTGGG 1 cut(s) 901
BpiI GAAGAC 2 cut(s) 708, 1032
BpmI CTGGAG 1 cut(s) 39
BpuEI CTTGAG 2 cut(s) 160, 1218
BpuMI CCSGG 1 cut(s) 727
BsaAI YACGTR 1 cut(s) 419
BsaBI GATNNNNATC 1 cut(s) 654
BsaJI CCNNGG 2 cut(s) 864, 941
Bsc4I CCNNNNNNNGG 1 cut(s) 865
Bse1I ACTGG 3 cut(s) 130, 896, 1247
Bse3DI GCAATG 1 cut(s) 774
Bse8I GATNNNNATC 1 cut(s) 654
BseBI CCWGG 1 cut(s) 932
BseDI CCNNGG 2 cut(s) 864, 941
BseGI GGATG 1 cut(s) 359
BseJI GATNNNNATC 1 cut(s) 654
BseLI CCNNNNNNNGG 1 cut(s) 865
BseMI GCAATG 1 cut(s) 774
BseMII CTCAG 2 cut(s) 966, 1164
BseNI ACTGG 3 cut(s) 130, 896, 1247
BseRI GAGGAG 1 cut(s) 36
BseSI GKGCMC 1 cut(s) 898
BseXI GCAGC 1 cut(s) 142
BshFI GGCC 5 cut(s) 222, 507, 538, 689, 1030
BshNI GGYRCC 1 cut(s) 754
BsiHKAI GWGCWC 1 cut(s) 424
BsiSI CCGG 1 cut(s) 727
BslI CCNNNNNNNGG 1 cut(s) 865
BsmAI GTCTC 2 cut(s) 615, 1177
BsnI GGCC 5 cut(s) 222, 507, 538, 689, 1030
Bsp1286I GDGCHC 2 cut(s) 424, 898
Bsp143I GATC 4 cut(s) 609, 937, 984, 1093
BspACI CCGC 3 cut(s) 859, 1032, 1252
BspANI GGCC 5 cut(s) 222, 507, 538, 689, 1030
BspCNI CTCAG 2 cut(s) 965, 1165
BspLI GGNNCC 3 cut(s) 221, 756, 939
BspMAI CTGCAG 1 cut(s) 123
BspMI ACCTGC 1 cut(s) 126
BspPI GGATC 3 cut(s) 932, 945, 1088
BspT107I GGYRCC 1 cut(s) 754
BsrBI CCGCTC 1 cut(s) 861
BsrDI GCAATG 1 cut(s) 774
BsrI ACTGG 3 cut(s) 130, 896, 1247
BssECI CCNNGG 2 cut(s) 864, 941
BssMI GATC 4 cut(s) 609, 937, 984, 1093
BssT1I CCWWGG 2 cut(s) 864, 941
Bst2UI CCWGG 1 cut(s) 932
Bst4CI ACNGT 1 cut(s) 1064
BstBAI YACGTR 1 cut(s) 419
BstC8I GCNNGC 2 cut(s) 1032, 1055
BstDEI CTNAG 2 cut(s) 952, 1173
BstEII GGTNACC 1 cut(s) 1166
BstF5I GGATG 1 cut(s) 359
BstKTI GATC 4 cut(s) 612, 940, 987, 1096
BstMAI GTCTC 2 cut(s) 615, 1177
BstMBI GATC 4 cut(s) 609, 937, 984, 1093
BstMWI GCNNNNNNNGC 2 cut(s) 544, 1019
BstNI CCWGG 1 cut(s) 932
BstNSI RCATGY 1 cut(s) 1057
BstPI GGTNACC 1 cut(s) 1166
BstSCI CCNGG 2 cut(s) 725, 930
BstSFI CTRYAG 1 cut(s) 119
BstSLI GKGCMC 1 cut(s) 898
BstV1I GCAGC 1 cut(s) 142
BstV2I GAAGAC 2 cut(s) 708, 1032
BstX2I RGATCY 1 cut(s) 937
BstYI RGATCY 1 cut(s) 937
BsuRI GGCC 5 cut(s) 222, 507, 538, 689, 1030
BtgZI GCGATG 1 cut(s) 1139
BtsCI GGATG 1 cut(s) 359
BtsI GCAGTG 1 cut(s) 237
BtsIMutI CAGTG 3 cut(s) 237, 841, 1050
BveI ACCTGC 1 cut(s) 126
Cac8I GCNNGC 2 cut(s) 1032, 1055
Cfr13I GGNCC 7 cut(s) 77, 115, 206, 220, 506, 928, 1029
CsiI ACCWGGT 1 cut(s) 930
Csp6I GTAC 1 cut(s) 394
CviAII CATG 5 cut(s) 310, 397, 590, 1036, 1054
CviQI GTAC 1 cut(s) 394
DdeI CTNAG 2 cut(s) 952, 1173
DpnI GATC 4 cut(s) 611, 939, 986, 1095
DpnII GATC 4 cut(s) 609, 937, 984, 1093
EaeI YGGCCR 2 cut(s) 536, 687
EciI GGCGGA 1 cut(s) 1241
Eco130I CCWWGG 2 cut(s) 864, 941
Eco32I GATATC 1 cut(s) 672
Eco47I GGWCC 4 cut(s) 77, 115, 206, 928
Eco57I CTGAAG 2 cut(s) 1002, 1026
Eco72I CACGTG 1 cut(s) 419
Eco91I GGTNACC 1 cut(s) 1166
EcoO109I RGGNCCY 1 cut(s) 220
EcoO65I GGTNACC 1 cut(s) 1166
EcoRI GAATTC 2 cut(s) 470, 813
EcoRII CCWGG 1 cut(s) 930
EcoRV GATATC 1 cut(s) 672
EcoT14I CCWWGG 2 cut(s) 864, 941
ErhI CCWWGG 2 cut(s) 864, 941
FaeI CATG 5 cut(s) 313, 400, 593, 1039, 1057
FatI CATG 5 cut(s) 309, 396, 589, 1035, 1053
FauI CCCGC 1 cut(s) 1039
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 1 cut(s) 366
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 1 cut(s) 887
GluI GCNGC 1 cut(s) 156
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 5 cut(s) 222, 507, 538, 689, 1030
HapII CCGG 1 cut(s) 727
Hin1II CATG 5 cut(s) 313, 400, 593, 1039, 1057
HindIII AAGCTT 3 cut(s) 257, 344, 692
HinfI GANTC 4 cut(s) 596, 950, 1177, 1259
HpaII CCGG 1 cut(s) 727
HphI GGTGA 4 cut(s) 326, 535, 1060, 1178
Hpy166II GTNNAC 3 cut(s) 115, 214, 1212
Hpy188I TCNGA 6 cut(s) 232, 676, 783, 812, 955, 1182
Hpy188III TCNNGA 4 cut(s) 287, 887, 1079, 1235
Hpy8I GTNNAC 3 cut(s) 115, 214, 1212
HpyAV CCTTC 6 cut(s) 100, 188, 233, 359, 834, 1196
HpyCH4III ACNGT 1 cut(s) 1064
HpyCH4IV ACGT 1 cut(s) 418
HpyCH4V TGCA 7 cut(s) 121, 242, 325, 416, 437, 767, 846
HpyF10VI GCNNNNNNNGC 2 cut(s) 544, 1019
HpyF3I CTNAG 2 cut(s) 952, 1173
HpySE526I ACGT 1 cut(s) 418
Hsp92II CATG 5 cut(s) 313, 400, 593, 1039, 1057
Kzo9I GATC 4 cut(s) 609, 937, 984, 1093
LmnI GCTCC 1 cut(s) 866
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 1 cut(s) 344
MabI ACCWGGT 1 cut(s) 930
MaeI CTAG 1 cut(s) 887
MaeII ACGT 1 cut(s) 418
MaeIII GTNAC 1 cut(s) 1166
MalI GATC 4 cut(s) 611, 939, 986, 1095
MbiI CCGCTC 1 cut(s) 861
MboI GATC 4 cut(s) 609, 937, 984, 1093
MboII GAAGA 9 cut(s) 471, 619, 713, 875, 881, 893, 1008, 1032, 1166
MfeI CAATTG 2 cut(s) 243, 1197
MflI RGATCY 1 cut(s) 937
MhlI GDGCHC 2 cut(s) 424, 898
MlsI TGGCCA 2 cut(s) 538, 689
MluCI AATT 8 cut(s) 9, 131, 243, 290, 470, 813, 1197, 1282
MluNI TGGCCA 2 cut(s) 538, 689
MlyI GAGTC 2 cut(s) 944, 1186
MmeI TCCRAC 3 cut(s) 510, 906, 927
Mox20I TGGCCA 2 cut(s) 538, 689
MroXI GAANNNNTTC 1 cut(s) 68
MscI TGGCCA 2 cut(s) 538, 689
MseI TTAA 4 cut(s) 252, 960, 978, 1110
Msp20I TGGCCA 2 cut(s) 538, 689
MspI CCGG 1 cut(s) 727
MspR9I CCNGG 2 cut(s) 727, 932
MunI CAATTG 2 cut(s) 243, 1197
MvaI CCWGG 1 cut(s) 932
MwoI GCNNNNNNNGC 2 cut(s) 544, 1019
NciI CCSGG 1 cut(s) 727
NdeII GATC 4 cut(s) 609, 937, 984, 1093
NlaIII CATG 5 cut(s) 313, 400, 593, 1039, 1057
NlaIV GGNNCC 3 cut(s) 221, 756, 939
NmuCI GTSAC 1 cut(s) 1166
NspI RCATGY 1 cut(s) 1057
PaeI GCATGC 1 cut(s) 1057
PdmI GAANNNNTTC 1 cut(s) 68
PfeI GAWTC 2 cut(s) 596, 1259
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 2 cut(s) 944, 1185
PmaCI CACGTG 1 cut(s) 419
PmlI CACGTG 1 cut(s) 419
PpsI GAGTC 2 cut(s) 944, 1185
Ppu21I YACGTR 1 cut(s) 419
PshBI ATTAAT 2 cut(s) 978, 1110
Psp6I CCWGG 1 cut(s) 930
PspCI CACGTG 1 cut(s) 419
PspEI GGTNACC 1 cut(s) 1166
PspGI CCWGG 1 cut(s) 930
PspN4I GGNNCC 3 cut(s) 221, 756, 939
PspPI GGNCC 7 cut(s) 77, 115, 206, 220, 506, 928, 1029
PstI CTGCAG 1 cut(s) 123
PsuI RGATCY 1 cut(s) 937
RsaI GTAC 1 cut(s) 395
RsaNI GTAC 1 cut(s) 394
SaqAI TTAA 4 cut(s) 252, 960, 978, 1110
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 4 cut(s) 609, 937, 984, 1093
Sau96I GGNCC 7 cut(s) 77, 115, 206, 220, 506, 928, 1029
SchI GAGTC 2 cut(s) 944, 1186
ScrFI CCNGG 2 cut(s) 727, 932
SduI GDGCHC 2 cut(s) 424, 898
SexAI ACCWGGT 1 cut(s) 930
SfaNI GCATC 1 cut(s) 344
SfcI CTRYAG 1 cut(s) 119
SinI GGWCC 4 cut(s) 77, 115, 206, 928
SmlI CTYRAG 2 cut(s) 139, 1233
SmoI CTYRAG 2 cut(s) 139, 1233
SphI GCATGC 1 cut(s) 1057
Sse9I AATT 8 cut(s) 9, 131, 243, 290, 470, 813, 1197, 1282
SsiI CCGC 3 cut(s) 859, 1032, 1252
SspI AATATT 3 cut(s) 36, 991, 1150
SspMI CTAG 1 cut(s) 887
StyD4I CCNGG 2 cut(s) 725, 930
StyI CCWWGG 2 cut(s) 864, 941
TaaI ACNGT 1 cut(s) 1064
TaiI ACGT 1 cut(s) 421
TaqI TCGA 2 cut(s) 272, 1106
TasI AATT 8 cut(s) 9, 131, 243, 290, 470, 813, 1197, 1282
TatI WGTACW 1 cut(s) 393
TfiI GAWTC 2 cut(s) 596, 1259
Tru1I TTAA 4 cut(s) 252, 960, 978, 1110
Tru9I TTAA 4 cut(s) 252, 960, 978, 1110
TscAI CASTG 3 cut(s) 244, 841, 1050
TseFI GTSAC 1 cut(s) 1166
TseI GCWGC 1 cut(s) 155
Tsp45I GTSAC 1 cut(s) 1166
TspDTI ATGAA 8 cut(s) 19, 463, 515, 605, 714, 1128, 1209, 1251
TspRI CASTG 3 cut(s) 244, 841, 1050
VpaK11BI GGWCC 4 cut(s) 77, 115, 206, 928
VspI ATTAAT 2 cut(s) 978, 1110
XapI RAATTY 4 cut(s) 131, 290, 470, 813
XbaI TCTAGA 1 cut(s) 886
XceI RCATGY 1 cut(s) 1057
XcmI CCANNNNNNNNNTGG 1 cut(s) 1042
XmnI GAANNNNTTC 1 cut(s) 68
XspI CTAG 1 cut(s) 887
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.