RchiOBHm_Chr5g0029741

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
23407524 .. 23427835
20312 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30910

Sequence Viewer

Length: 3045 bp
ATGAATTACACGTTCTTCTTCTCTCGGCTTCTTGTTGGTTCTCTCTTGCTAGTTTTATCTGCGAGCTTTGCTTTCGGAGCTAATCGATTATCTCCAGATGAAAGACAAGCTTTAATGGACATCGGAAAGACACTCGGTAAGAAATGGGATTTCAGCGTAGATCCATGCAGCGGAGAACTTGGATGGATTAGTCCTTCGGATGACCAATACATGAATCAGGTCATCTGCGACAACTGTAGTACTACCTCCAGTACTATGGCCGATCAGATCTGCCATGTCACAAACATATCTTTGAAAGCTCAGAATTTGGCAGGAACACTCCCACCAGAGTTGAAGAGGCTCACCTATCTACAAACAATAGATCTCACCCGCAACTATTTGAGTGGCACCATCCCTCGAGAATGGGGCTCCCTGCCGCTAGCTACCATTTCCCTTGTTGGAAACCGTTTGACAGGTTCTATCCCCATTGAGATCGGAAACATTAGCACCCTGCAAAGTTTGGACATCACTTCCAATAATTTTTCAGGACTTCCTCCGGAGCTTGGGAATTTAACCAGCATAAAGAAAATGCTTCTTTCCTCAAACAATTTTACTGGGAAGTTGCCCGAAACATTTGCAAGGCTTAAGACATTAACGGACTTTCGGGTTGATGACAATCACTTTTCTGGGAAGATACCTGATTTCATTCAGAACTGGACAAATCTTACAAAACTAGTAATTCAGGCTAGTGGTTTGACTGGGCCAATTCCATCCAGCATCTCTCTTTTGAAGGAATTAACTGACCTGAGAATTACTGACTTGGATGGACCTGATGAAGCACCTTTTCCTCGACTTGATGATATGACAGAACTGAAAACACTGATGTTGAGGAATTGCAATCTTACTGGAGAACTACCTATGAATCTTGCAGATATGACAAAGTTGAAATACTTAGACCTCAGCTTTAACAAGCTTACTGGGGAAATTCCAAGCTCCTTTGGTAATGAAAATGATTTGGATTACATATTCTTAACTGGAAACTTGCTGACTGGATCAGTGCCCGGATCGGTGAAAGGAGACAACATTGATCTTTCATACAACAACTTCGCAACCACTAGTGTGACCGGCAATTGTAGAATTGGCCGCATGAACTTGTTTGCAAGCTCGTCAAAGGGAAATAATTTAATTATTCCATGTTTAGAAAATGCAACATGTCCGAAAGATCTATCTCACTCTCTCCGTATAAATTGTGGTGGAAGTGTGATAGTTGTTAATGAAAATATCACCACACCCATAACATATGAAGCAGATAACGATGATGGTGGCCCTTCATCATTTTATAGCAAAAGCGATTGGGGGTCTAGCAGCACTGGTTATTACCCTGATGATAACACAGAAGACACCTTTATTGTGTATAATATATCTACACTCCCTATGCCCGATCCTCAGCTGTACATGACTGCACGTGTTTCACCCATCTCTCTAACTTATTTTGGGTTTTGCCTGATTAATGGAAACTACATAGTGAGGCTCCATTTTGCAGAGATAATGTTTACAAATGACAAAACATATCGTAGCTTGGGAAGGCGTATATTTGATGTTTACATTCAGGGGAAACGAGTGGAGAAGGATTTTAATATTGCGGATGTAGCAGGCGGGAATGGTATATTAGTTATAAGAAACTATACTGCTTCTGTAACAAATCATACCTTGGAGATTCGTTTCTTTTGGAATGGGAAAGGAACACAGGTTATCCCTAAAAAAGGAGTCTATGGTCCTCTTATATCAGCCATTTCTGTAGACCCGGATTTTATACCCCCGAAAGAACGCTCGCCAGGTATATCGGCAGGTGAAGTGGTTGGAATTGTGGCTGGAGGAGTGTTCATAATATTAGTGATTTTATGTATTCTCTGGTGGAAAGGCTTCACAGGACCAGCAAATACTTTGGAACAAGATTTGAAGGGTGTGGACCTGCAGACTGGCAAATTTACCTTGAGGCAAATCAAAGCTGCCACGAACGACTTTGACATAGCGAACAAGATTGGAGAAGGTGGTTTTGGTCCTGTTTACAGGGGCCTTCTATCAGACAACACTGCAATTGCTGTTAAGAAGCTTTCAGCCAAATCGAAGCAAGGAAATCGTGAATTTGTGAATGAGATAGGCATGATTTCTGCTCTGCAACACCCTCACCTTGTCAAGCTTTATGGATGCTGTATTGAAGGAAATAACTTGTTGCTTGTCTATGAGTACATGGAAAACAATAGTCTTGCACGTGCTCTATTTGGCCCAAAAGAAAGTCAGGTGAAGTTGGATTGGCCAACAAGGCATAGGATTTGTGTTGGTATAGCCAGAGGTTTGACTTATCTCCATGAGGAATCAAGGTTGAAGATCGTTCATAGAGACATCAAAGCTACTAATGTGCTACTTGATAAAAATCTTTTCCCCAAGATATCTGACTTTGGATTGGCCAAGCTTGATGAAGACGATAATACCCACATAAGCACCCGGATTGCTGGAACTTTTGGTTATATGGCACCTGAATATGCAATGCGAGGTTATCTGACTGATAAAGCAGATGTTTATAGTTTCGGAATTCTTGTATTGGAAATGGTCAGTGGAAGGTGCAATACAACTTACCGCTCCAAGGAAGAATGTTTTTATCTTCTAGACTGGGCACTTCTTCTAAAAGAGAGAGCAAGTTTGTTGGACCTGGTGGATCCAAGGTTGGACTCAGAGTTTAACAAAGCAGAAATGATTAATACGATCAATATTGCTCTCCTTTGTGCTAATGCTTCTTCAGCAGTTAGGCCCGCCATGTCTTCAGTGGTGAGCATGCTTGACGGTAGAGCTTCTGTTCAGGAGGTGGTCTATGATCCAAACGCCTCGATTAATGAAATCAATGCGATGAGGAAACATTTTCAATCCAATATTGAAGAAAACAATGGTGACCCTGAGAGTCAGAGACAAACTATGTCAATTGAAGGGTCGTGGACTGCTTCATCTACATCTGCTCAAGACCTCTATCCAGTCCGCCCTGATTCATATTATTGGGAGAATAGAAATTAG

Protein Analysis

1014

Amino Acids

112.16

Weight (kDa)

5.4

Isoelectric Point (pI)

30.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 157 - 265 9.2e-09 Leucine-rich repeat region
LRR_8 PF13855 163 - 221 8.3e-07 Leucine rich repeat
LRR_8 PF13855 283 - 342 5.7e-07 Leucine rich repeat
Malectin PF11721 405 - 591 2.6e-41 Malectin domain
PK_Tyr_Ser-Thr PF07714 670 - 872 8.9e-48 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 670 - 869 2.8e-45 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000292)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53420 AT3G14840
fragaria_vesca FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17851
malus_domestica MD03G1246600.v1.1 MD06G1045200.v1.1 MD06G1045400.v1.1 MD11G1267800.v1.1 MD11G1267900.v1.1 MD11G1268100.v1.1 MD11G1268300.v1.1 MD11G1268500.v1.1 MD11G1268600.v1.1
prunus_persica Prupe.4G157700_v2.0.a1 Prupe.4G157700_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1
pyrus_communis pycom03g19540 pycom11g23600 pycom11g23630 pycom11g23690 pycom11g23720 pycom11g23730 pycom11g23740 pycom11g23750
rosa_chinensis RchiOBHm_Chr0c40g0503411 RchiOBHm_Chr0c40g0503421 RchiOBHm_Chr5g0029631 RchiOBHm_Chr5g0029661 RchiOBHm_Chr5g0029701 RchiOBHm_Chr5g0029741 RchiOBHm_Chr5g0029771 RchiOBHm_Chr5g0029781 RchiOBHm_Chr5g0029811 RchiOBHm_Chr5g0029851 RchiOBHm_Chr5g0029871 RchiOBHm_Chr5g0029891 RchiOBHm_Chr7g0222221
rosa_laevigata RLG00000017380 RLG00000032873 RLG00000033188 RLG00000033190 RLG00000033192 RLG00000033193 RLG00000033194 RLG00000033196 RLG00000033199 RLG00000033238
rosa_multiflora Rmu_co8359987.1_g000001 Rmu_co8444909.1_g000001 Rmu_sc0001608.1_g000007 Rmu_sc0001608.1_g000009 Rmu_sc0001608.1_g000013 Rmu_sc0001608.1_g000018 Rmu_sc0001608.1_g000023 Rmu_sc0001608.1_g000040 Rmu_sc0003238.1_g000016 Rmu_sc0003368.1_g000026 Rmu_sc0003368.1_g000034 Rmu_sc0003368.1_g000043 Rmu_sc0003368.1_g000047 Rmu_sc0003368.1_g000052 Rmu_sc0003368.1_g000054 Rmu_sc0004963.1_g000001
rosa_roxburghii Rroxscaffold_1G00050080 Rroxscaffold_1G00050090 Rroxscaffold_1G00050110 Rroxscaffold_1G00050120 Rroxscaffold_1G00050180 Rroxscaffold_1G00050190 Rroxscaffold_1G00050220 Rroxscaffold_1G00050270 Rroxscaffold_1G00050300
rosa_rugosa Rorug04G0065200 Rorug05G0114900 Rorug05G0115000 Rorug05G0115100 Rorug05G0120100 Rorug05G0238900
rosa_samantha Rh5AG207800 Rh5AG208000 Rh5AG208300 Rh5AG208400 Rh5AG208800 Rh5AG294900 Rh5AG295000 Rh5AG295400 Rh5CG230400 Rh7AG347800
rosa_wichuraiana Rw0G005370 Rw0G012460 Rw0G019060 Rw5G018910 Rw5G018920 Rw5G018930 Rw5G018940 Rw5G018960 Rw5G018970 Rw5G018980 Rw5G018990 Rw5G019000 Rw7G029840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1655
AarI CACCTGC 1 cut(s) 1817
Acc36I ACCTGC 2 cut(s) 1817, 1959
AccB1I GGYRCC 2 cut(s) 386, 2512
AccBSI CCGCTC 1 cut(s) 2619
AccI GTMKAC 1 cut(s) 1779
AccIII TCCGGA 1 cut(s) 535
AciI CCGC 9 cut(s) 171, 370, 416, 1123, 1622, 1635, 2617, 2790, 3010
AclWI GGATC 7 cut(s) 155, 1039, 1051, 1415, 2690, 2703, 2846
AcoI YGGCCR 4 cut(s) 258, 1120, 2294, 2445
AcsI RAATTY 6 cut(s) 304, 547, 963, 1964, 2123, 2571
AcuI CTGAAG 2 cut(s) 2760, 2784
AcvI CACGTG 2 cut(s) 1445, 2252
AfaI GTAC 4 cut(s) 241, 253, 1433, 2228
AfiI CCNNNNNNNGG 4 cut(s) 170, 542, 1742, 2623
AflII CTTAAG 1 cut(s) 623
AflIII ACRYGT 3 cut(s) 9, 1190, 1444
AhlI ACTAGT 2 cut(s) 712, 1094
AjnI CCWGG 2 cut(s) 1813, 2688
AjuI GAANNNNNNNTTGG 2 cut(s) 2019, 2051
AleI CACNNNNGTG 1 cut(s) 1097
Alw21I GWGCWC 1 cut(s) 2257
Alw26I GTCTC 3 cut(s) 1050, 2373, 2935
AlwI GGATC 7 cut(s) 155, 1039, 1051, 1415, 2690, 2703, 2846
Ama87I CYCGRG 1 cut(s) 396
Aor13HI TCCGGA 1 cut(s) 535
AoxI GGCC 9 cut(s) 258, 740, 1120, 1303, 2053, 2263, 2294, 2445, 2786
ApeKI GCWGC 3 cut(s) 168, 1344, 1988
ApoI RAATTY 6 cut(s) 304, 547, 963, 1964, 2123, 2571
AseI ATTAAT 3 cut(s) 1488, 2736, 2868
Asp700I GAANNNNTTC 1 cut(s) 1901
AsuC2I CCSGG 3 cut(s) 1041, 1784, 2485
AsuNHI GCTAGC 1 cut(s) 418
AvaI CYCGRG 1 cut(s) 396
AvaII GGWCC 6 cut(s) 806, 1754, 1910, 1948, 2039, 2686
BaeGI GKGCMC 2 cut(s) 1041, 2656
BalI TGGCCA 2 cut(s) 2296, 2447
BamHI GGATCC 1 cut(s) 2695
BanI GGYRCC 2 cut(s) 386, 2512
BanII GRGCYC 1 cut(s) 410
BarI GAAGNNNNNNTAC 2 cut(s) 2590, 2622
BbrPI CACGTG 2 cut(s) 1445, 2252
BbsI GAAGAC 3 cut(s) 1383, 2466, 2790
Bbv12I GWGCWC 1 cut(s) 2257
BbvCI CCTCAGC 2 cut(s) 938, 1425
BbvI GCAGC 3 cut(s) 180, 1356, 1975
BccI CCATC 6 cut(s) 177, 398, 757, 797, 1292, 1463
BcgI CGANNNNNNTGC 4 cut(s) 596, 630, 2099, 2133
BciT130I CCWGG 2 cut(s) 1815, 2690
BcnI CCSGG 3 cut(s) 1041, 1784, 2485
BcoDI GTCTC 3 cut(s) 1050, 2373, 2935
BcuI ACTAGT 2 cut(s) 712, 1094
BfaI CTAG 7 cut(s) 50, 419, 713, 726, 1095, 1341, 2645
BfmI CTRYAG 3 cut(s) 235, 1776, 1952
BfrI CTTAAG 1 cut(s) 623
BfuAI ACCTGC 2 cut(s) 1817, 1959
BglI GCCNNNNNGGC 1 cut(s) 2302
BglII AGATCT 3 cut(s) 267, 361, 1201
BisI GCNGC 5 cut(s) 169, 416, 1123, 1345, 1989
BlsI GCNGC 5 cut(s) 170, 417, 1124, 1346, 1990
BmcAI AGTACT 2 cut(s) 241, 253
Bme1390I CCNGG 5 cut(s) 1041, 1784, 1815, 2485, 2690
Bme18I GGWCC 6 cut(s) 806, 1754, 1910, 1948, 2039, 2686
BmeT110I CYCGRG 1 cut(s) 396
BmiI GGNNCC 6 cut(s) 388, 409, 1511, 2054, 2514, 2697
BmrFI CCNGG 5 cut(s) 1041, 1784, 1815, 2485, 2690
BmrI ACTGGG 4 cut(s) 603, 747, 966, 2659
BmsI GCATC 2 cut(s) 765, 2177
BmtI GCTAGC 1 cut(s) 422
BmuI ACTGGG 4 cut(s) 603, 747, 966, 2659
BpiI GAAGAC 3 cut(s) 1383, 2466, 2790
BpmI CTGGAG 4 cut(s) 78, 232, 906, 1872
Bpu10I CCTNAGC 2 cut(s) 938, 1425
BpuEI CTTGAG 2 cut(s) 1993, 2976
BpuMI CCSGG 3 cut(s) 1041, 1784, 2485
Bsa29I ATCGAT 1 cut(s) 85
BsaAI YACGTR 2 cut(s) 1445, 2252
BsaBI GATNNNNATC 2 cut(s) 654, 2412
BsaJI CCNNGG 3 cut(s) 1689, 2622, 2699
BsaWI WCCGGW 1 cut(s) 535
Bsc4I CCNNNNNNNGG 4 cut(s) 170, 542, 1742, 2623
Bse118I RCCGGY 1 cut(s) 1103
Bse3DI GCAATG 1 cut(s) 2532
Bse8I GATNNNNATC 2 cut(s) 654, 2412
BseAI TCCGGA 1 cut(s) 535
BseBI CCWGG 2 cut(s) 1815, 2690
BseCI ATCGAT 1 cut(s) 85
BseDI CCNNGG 3 cut(s) 1689, 2622, 2699
BseGI GGATG 7 cut(s) 188, 205, 390, 749, 808, 1630, 2192
BseJI GATNNNNATC 2 cut(s) 654, 2412
BseLI CCNNNNNNNGG 4 cut(s) 170, 542, 1742, 2623
BseMI GCAATG 1 cut(s) 2532
BseMII CTCAG 6 cut(s) 314, 776, 952, 1439, 2724, 2922
BseRI GAGGAG 1 cut(s) 1869
BseSI GKGCMC 2 cut(s) 1041, 2656
BseXI GCAGC 3 cut(s) 180, 1356, 1975
BsgI GTGCAG 1 cut(s) 1425
BshFI GGCC 9 cut(s) 260, 742, 1122, 1305, 2055, 2265, 2296, 2447, 2788
BshNI GGYRCC 2 cut(s) 386, 2512
BshVI ATCGAT 1 cut(s) 85
BsiHKAI GWGCWC 1 cut(s) 2257
BsiHKCI CYCGRG 1 cut(s) 396
BsiSI CCGG 5 cut(s) 536, 1041, 1104, 1784, 2485
BslI CCNNNNNNNGG 4 cut(s) 170, 542, 1742, 2623
BsmAI GTCTC 3 cut(s) 1050, 2373, 2935
BsnI GGCC 9 cut(s) 260, 742, 1122, 1305, 2055, 2265, 2296, 2447, 2788
BsoBI CYCGRG 1 cut(s) 396
Bsp1286I GDGCHC 4 cut(s) 410, 1041, 2257, 2656
Bsp13I TCCGGA 1 cut(s) 535
Bsp1407I TGTACA 1 cut(s) 1431
BspACI CCGC 9 cut(s) 171, 370, 416, 1123, 1622, 1635, 2617, 2790, 3010
BspANI GGCC 9 cut(s) 260, 742, 1122, 1305, 2055, 2265, 2296, 2447, 2788
BspCNI CTCAG 6 cut(s) 313, 777, 951, 1438, 2723, 2923
BspDI ATCGAT 1 cut(s) 85
BspEI TCCGGA 1 cut(s) 535
BspLI GGNNCC 6 cut(s) 388, 409, 1511, 2054, 2514, 2697
BspMAI CTGCAG 1 cut(s) 1956
BspMI ACCTGC 2 cut(s) 1817, 1959
BspOI GCTAGC 1 cut(s) 422
BspPI GGATC 7 cut(s) 155, 1039, 1051, 1415, 2690, 2703, 2846
BspT107I GGYRCC 2 cut(s) 386, 2512
BspTI CTTAAG 1 cut(s) 623
BsrBI CCGCTC 1 cut(s) 2619
BsrDI GCAATG 1 cut(s) 2532
BsrFI RCCGGY 1 cut(s) 1103
BsrGI TGTACA 1 cut(s) 1431
BssAI RCCGGY 1 cut(s) 1103
BssECI CCNNGG 3 cut(s) 1689, 2622, 2699
BssT1I CCWWGG 3 cut(s) 1689, 2622, 2699
Bst2UI CCWGG 2 cut(s) 1815, 2690
Bst4CI ACNGT 3 cut(s) 236, 446, 2822
Bst6I CTCTTC 1 cut(s) 329
BstAFI CTTAAG 1 cut(s) 623
BstAUI TGTACA 1 cut(s) 1431
BstBAI YACGTR 2 cut(s) 1445, 2252
BstC8I GCNNGC 7 cut(s) 64, 420, 1141, 1633, 1811, 2790, 2813
BstDEI CTNAG 7 cut(s) 300, 785, 931, 938, 1425, 2710, 2931
BstEII GGTNACC 1 cut(s) 2924
BstENI CCTNNNNNAGG 1 cut(s) 1740
BstF5I GGATG 7 cut(s) 188, 205, 390, 749, 808, 1630, 2192
BstMAI GTCTC 3 cut(s) 1050, 2373, 2935
BstMWI GCNNNNNNNGC 5 cut(s) 68, 77, 1628, 2302, 2777
BstNI CCWGG 2 cut(s) 1815, 2690
BstNSI RCATGY 2 cut(s) 1194, 2815
BstPI GGTNACC 1 cut(s) 2924
BstSCI CCNGG 5 cut(s) 1039, 1782, 1813, 2483, 2688
BstSFI CTRYAG 3 cut(s) 235, 1776, 1952
BstSLI GKGCMC 2 cut(s) 1041, 2656
BstV1I GCAGC 3 cut(s) 180, 1356, 1975
BstV2I GAAGAC 3 cut(s) 1383, 2466, 2790
BstX2I RGATCY 5 cut(s) 160, 267, 361, 1201, 2695
BstXI CCANNNNNNTGG 1 cut(s) 256
BstYI RGATCY 5 cut(s) 160, 267, 361, 1201, 2695
Bsu15I ATCGAT 1 cut(s) 85
BsuRI GGCC 9 cut(s) 260, 742, 1122, 1305, 2055, 2265, 2296, 2447, 2788
BsuTUI ATCGAT 1 cut(s) 85
BtgZI GCGATG 1 cut(s) 2897
BtsCI GGATG 7 cut(s) 188, 205, 390, 749, 808, 1630, 2192
BtsI GCAGTG 1 cut(s) 2070
BtsIMutI CAGTG 6 cut(s) 857, 1041, 1347, 2070, 2599, 2808
BveI ACCTGC 2 cut(s) 1817, 1959
Cac8I GCNNGC 7 cut(s) 64, 420, 1141, 1633, 1811, 2790, 2813
Cfr10I RCCGGY 1 cut(s) 1103
ClaI ATCGAT 1 cut(s) 85
CsiI ACCWGGT 1 cut(s) 2688
Csp6I GTAC 4 cut(s) 240, 252, 1432, 2227
CspCI CAANNNNNGTGG 2 cut(s) 312, 347
CviQI GTAC 4 cut(s) 240, 252, 1432, 2227
DdeI CTNAG 7 cut(s) 300, 785, 931, 938, 1425, 2710, 2931
EaeI YGGCCR 4 cut(s) 258, 1120, 2294, 2445
Eam1104I CTCTTC 1 cut(s) 329
EarI CTCTTC 1 cut(s) 329
EciI GGCGGA 1 cut(s) 2999
Eco130I CCWWGG 3 cut(s) 1689, 2622, 2699
Eco24I GRGCYC 1 cut(s) 410
Eco32I GATATC 1 cut(s) 2430
Eco47I GGWCC 6 cut(s) 806, 1754, 1910, 1948, 2039, 2686
Eco57I CTGAAG 2 cut(s) 2760, 2784
Eco72I CACGTG 2 cut(s) 1445, 2252
Eco88I CYCGRG 1 cut(s) 396
Eco91I GGTNACC 1 cut(s) 2924
EcoNI CCTNNNNNAGG 1 cut(s) 1740
EcoO109I RGGNCCY 1 cut(s) 2053
EcoO65I GGTNACC 1 cut(s) 2924
EcoRI GAATTC 1 cut(s) 2571
EcoRII CCWGG 2 cut(s) 1813, 2688
EcoRV GATATC 1 cut(s) 2430
EcoT14I CCWWGG 3 cut(s) 1689, 2622, 2699
EcoT38I GRGCYC 1 cut(s) 410
ErhI CCWWGG 3 cut(s) 1689, 2622, 2699
FalI AAGNNNNNCTT 2 cut(s) 94, 126
FauI CCCGC 3 cut(s) 377, 1628, 2797
FauNDI CATATG 1 cut(s) 1279
FblI GTMKAC 1 cut(s) 1779
Fnu4HI GCNGC 5 cut(s) 169, 416, 1123, 1345, 1989
FokI GGATG 7 cut(s) 195, 212, 377, 736, 815, 1637, 2199
FriOI GRGCYC 1 cut(s) 410
Fsp4HI GCNGC 5 cut(s) 169, 416, 1123, 1345, 1989
FspBI CTAG 7 cut(s) 50, 419, 713, 726, 1095, 1341, 2645
GluI GCNGC 5 cut(s) 169, 416, 1123, 1345, 1989
GsuI CTGGAG 4 cut(s) 78, 232, 906, 1872
HaeIII GGCC 9 cut(s) 260, 742, 1122, 1305, 2055, 2265, 2296, 2447, 2788
HapII CCGG 5 cut(s) 536, 1041, 1104, 1784, 2485
HindIII AAGCTT 5 cut(s) 108, 950, 2090, 2177, 2450
HinfI GANTC 8 cut(s) 214, 901, 1696, 1746, 2354, 2708, 2935, 3017
HpaII CCGG 5 cut(s) 536, 1041, 1104, 1784, 2485
Hpy166II GTNNAC 6 cut(s) 1533, 1582, 1780, 1948, 2047, 2970
Hpy188III TCNNGA 8 cut(s) 95, 398, 525, 536, 2120, 2645, 2837, 2993
Hpy8I GTNNAC 6 cut(s) 1533, 1582, 1780, 1948, 2047, 2970
HpyCH4III ACNGT 3 cut(s) 236, 446, 2822
HpyCH4IV ACGT 3 cut(s) 11, 1444, 2251
HpyF10VI GCNNNNNNNGC 5 cut(s) 68, 77, 1628, 2302, 2777
HpyF3I CTNAG 7 cut(s) 300, 785, 931, 938, 1425, 2710, 2931
HpySE526I ACGT 3 cut(s) 11, 1444, 2251
Kpn2I TCCGGA 1 cut(s) 535
LmnI GCTCC 6 cut(s) 77, 413, 538, 977, 1515, 2624
Lsp1109I GCAGC 3 cut(s) 180, 1356, 1975
LweI GCATC 2 cut(s) 765, 2177
MabI ACCWGGT 1 cut(s) 2688
MaeI CTAG 7 cut(s) 50, 419, 713, 726, 1095, 1341, 2645
MaeII ACGT 3 cut(s) 11, 1444, 2251
MaeIII GTNAC 4 cut(s) 277, 1099, 1675, 2924
MbiI CCGCTC 1 cut(s) 2619
MfeI CAATTG 3 cut(s) 1108, 2076, 2955
MflI RGATCY 5 cut(s) 160, 267, 361, 1201, 2695
MhlI GDGCHC 4 cut(s) 410, 1041, 2257, 2656
MlsI TGGCCA 2 cut(s) 2296, 2447
MluNI TGGCCA 2 cut(s) 2296, 2447
MlyI GAGTC 3 cut(s) 1755, 2702, 2944
MmeI TCCRAC 5 cut(s) 418, 1819, 2268, 2664, 2685
Mox20I TGGCCA 2 cut(s) 2296, 2447
MroI TCCGGA 1 cut(s) 535
MroXI GAANNNNTTC 1 cut(s) 1901
MscI TGGCCA 2 cut(s) 2296, 2447
MslI CAYNNNNRTG 1 cut(s) 1097
Msp20I TGGCCA 2 cut(s) 2296, 2447
MspA1I CMGCKG 2 cut(s) 171, 1429
MspCI CTTAAG 1 cut(s) 623
MspI CCGG 5 cut(s) 536, 1041, 1104, 1784, 2485
MspR9I CCNGG 5 cut(s) 1041, 1784, 1815, 2485, 2690
MunI CAATTG 3 cut(s) 1108, 2076, 2955
MvaI CCWGG 2 cut(s) 1815, 2690
MwoI GCNNNNNNNGC 5 cut(s) 68, 77, 1628, 2302, 2777
NciI CCSGG 3 cut(s) 1041, 1784, 2485
NdeI CATATG 1 cut(s) 1279
NheI GCTAGC 1 cut(s) 418
NlaIV GGNNCC 6 cut(s) 388, 409, 1511, 2054, 2514, 2697
NmeAIII GCCGAG 1 cut(s) 4
NmuCI GTSAC 3 cut(s) 277, 1099, 2924
NspI RCATGY 2 cut(s) 1194, 2815
OliI CACNNNNGTG 1 cut(s) 1097
PaeI GCATGC 1 cut(s) 2815
PaeR7I CTCGAG 1 cut(s) 396
PaqCI CACCTGC 1 cut(s) 1817
PciI ACATGT 1 cut(s) 1190
PdmI GAANNNNTTC 1 cut(s) 1901
PfeI GAWTC 5 cut(s) 214, 901, 1696, 2354, 3017
PkrI GCNGC 5 cut(s) 170, 417, 1124, 1346, 1990
PleI GAGTC 3 cut(s) 1754, 2702, 2943
PmaCI CACGTG 2 cut(s) 1445, 2252
PmlI CACGTG 2 cut(s) 1445, 2252
PpsI GAGTC 3 cut(s) 1754, 2702, 2943
Ppu21I YACGTR 2 cut(s) 1445, 2252
PscI ACATGT 1 cut(s) 1190
PshBI ATTAAT 3 cut(s) 1488, 2736, 2868
PsiI TTATAA 1 cut(s) 1655
Psp6I CCWGG 2 cut(s) 1813, 2688
PspCI CACGTG 2 cut(s) 1445, 2252
PspEI GGTNACC 1 cut(s) 2924
PspGI CCWGG 2 cut(s) 1813, 2688
PspN4I GGNNCC 6 cut(s) 388, 409, 1511, 2054, 2514, 2697
PstI CTGCAG 1 cut(s) 1956
PsuI RGATCY 5 cut(s) 160, 267, 361, 1201, 2695
PvuII CAGCTG 1 cut(s) 1429
RsaI GTAC 4 cut(s) 241, 253, 1433, 2228
RsaNI GTAC 4 cut(s) 240, 252, 1432, 2227
RseI CAYNNNNRTG 1 cut(s) 1097
SatI GCNGC 5 cut(s) 169, 416, 1123, 1345, 1989
ScaI AGTACT 2 cut(s) 241, 253
SchI GAGTC 3 cut(s) 1755, 2702, 2944
ScrFI CCNGG 5 cut(s) 1041, 1784, 1815, 2485, 2690
SduI GDGCHC 4 cut(s) 410, 1041, 2257, 2656
SexAI ACCWGGT 1 cut(s) 2688
SfaNI GCATC 2 cut(s) 765, 2177
SfcI CTRYAG 3 cut(s) 235, 1776, 1952
Sfr274I CTCGAG 1 cut(s) 396
SinI GGWCC 6 cut(s) 806, 1754, 1910, 1948, 2039, 2686
SlaI CTCGAG 1 cut(s) 396
SmiMI CAYNNNNRTG 1 cut(s) 1097
SmlI CTYRAG 4 cut(s) 396, 623, 1972, 2991
SmoI CTYRAG 4 cut(s) 396, 623, 1972, 2991
SpeI ACTAGT 2 cut(s) 712, 1094
SphI GCATGC 1 cut(s) 2815
SsiI CCGC 9 cut(s) 171, 370, 416, 1123, 1622, 1635, 2617, 2790, 3010
SspI AATATT 4 cut(s) 1618, 1869, 2749, 2908
SspMI CTAG 7 cut(s) 50, 419, 713, 726, 1095, 1341, 2645
StyD4I CCNGG 5 cut(s) 1039, 1782, 1813, 2483, 2688
StyI CCWWGG 3 cut(s) 1689, 2622, 2699
TaaI ACNGT 3 cut(s) 236, 446, 2822
TaiI ACGT 3 cut(s) 14, 1447, 2254
TaqI TCGA 5 cut(s) 85, 397, 829, 2105, 2864
TatI WGTACW 4 cut(s) 239, 251, 1431, 2226
TauI GCSGC 2 cut(s) 418, 1125
TfiI GAWTC 5 cut(s) 214, 901, 1696, 2354, 3017
TscAI CASTG 6 cut(s) 864, 1041, 1354, 2077, 2599, 2808
TseFI GTSAC 3 cut(s) 277, 1099, 2924
TseI GCWGC 3 cut(s) 168, 1344, 1988
Tsp45I GTSAC 3 cut(s) 277, 1099, 2924
TspGWI ACGGA 2 cut(s) 650, 1208
TspRI CASTG 6 cut(s) 864, 1041, 1354, 2077, 2599, 2808
Vha464I CTTAAG 1 cut(s) 623
VpaK11BI GGWCC 6 cut(s) 806, 1754, 1910, 1948, 2039, 2686
VspI ATTAAT 3 cut(s) 1488, 2736, 2868
XagI CCTNNNNNAGG 1 cut(s) 1740
XapI RAATTY 6 cut(s) 304, 547, 963, 1964, 2123, 2571
XbaI TCTAGA 1 cut(s) 2644
XceI RCATGY 2 cut(s) 1194, 2815
XcmI CCANNNNNNNNNTGG 1 cut(s) 2800
XhoI CTCGAG 1 cut(s) 396
XmiI GTMKAC 1 cut(s) 1779
XmnI GAANNNNTTC 1 cut(s) 1901
XspI CTAG 7 cut(s) 50, 419, 713, 726, 1095, 1341, 2645
ZrmI AGTACT 2 cut(s) 241, 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.