Rmu_sc0001608.1_g000013

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001608.1
OG0000292
Physical Location & Seq
Reverse (-)
82019 .. 83096
1078 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001608.1_g000013.1.cds

Sequence Viewer

Length: 669 bp
atggattggctaacaaggcacaggatctgtgttggtatagcaaaaggtttggcttacctccatgaggaatcaaggttgaagatcgttcatagagacattaaagctactaatgtgctactcgataaaaatctttgtccaaagacagctgattttggattggccaagcttgatgaagaggataatacccacataagcacccggattgctggaactctaggatatatggcacctgaatatgcaatgcgaggttatctgacttataaagcagatgtttatagttttggagttgttgtgttggaaatagtcagtgggaggagcaacacaacttactgctccgaagaagaatgtttttatcttcttaattgggcacttcttctaaaggagagagggagtttgctggatctagtggatccaaggctaggctcagagtttaacaaagaacagatgattactacaatcaatgtggctctcctttgctctcatgtgtcttcagcagttaggccttccatgtcttcagtggtgaaaatgcttgaaggcagggcttcggttcagcaggtgatgtctgatccaaatgcctcaaacaatgaaatcaatgcaatgaggaaacattttcaatccagttttgaagaaaacaatggtgaccttgagagtcagagacaaactatataa

Protein Analysis

222

Amino Acids

24.97

Weight (kDa)

5.89

Isoelectric Point (pI)

41.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000292)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53420 AT3G14840
fragaria_vesca FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17851
malus_domestica MD03G1246600.v1.1 MD06G1045200.v1.1 MD06G1045400.v1.1 MD11G1267800.v1.1 MD11G1267900.v1.1 MD11G1268100.v1.1 MD11G1268300.v1.1 MD11G1268500.v1.1 MD11G1268600.v1.1
prunus_persica Prupe.4G157700_v2.0.a1 Prupe.4G157700_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1
pyrus_communis pycom03g19540 pycom11g23600 pycom11g23630 pycom11g23690 pycom11g23720 pycom11g23730 pycom11g23740 pycom11g23750
rosa_chinensis RchiOBHm_Chr0c40g0503411 RchiOBHm_Chr0c40g0503421 RchiOBHm_Chr5g0029631 RchiOBHm_Chr5g0029661 RchiOBHm_Chr5g0029701 RchiOBHm_Chr5g0029741 RchiOBHm_Chr5g0029771 RchiOBHm_Chr5g0029781 RchiOBHm_Chr5g0029811 RchiOBHm_Chr5g0029851 RchiOBHm_Chr5g0029871 RchiOBHm_Chr5g0029891 RchiOBHm_Chr7g0222221
rosa_laevigata RLG00000017380 RLG00000032873 RLG00000033188 RLG00000033190 RLG00000033192 RLG00000033193 RLG00000033194 RLG00000033196 RLG00000033199 RLG00000033238
rosa_multiflora Rmu_co8359987.1_g000001 Rmu_co8444909.1_g000001 Rmu_sc0001608.1_g000007 Rmu_sc0001608.1_g000009 Rmu_sc0001608.1_g000013 Rmu_sc0001608.1_g000018 Rmu_sc0001608.1_g000023 Rmu_sc0001608.1_g000040 Rmu_sc0003238.1_g000016 Rmu_sc0003368.1_g000026 Rmu_sc0003368.1_g000034 Rmu_sc0003368.1_g000043 Rmu_sc0003368.1_g000047 Rmu_sc0003368.1_g000052 Rmu_sc0003368.1_g000054 Rmu_sc0004963.1_g000001
rosa_roxburghii Rroxscaffold_1G00050080 Rroxscaffold_1G00050090 Rroxscaffold_1G00050110 Rroxscaffold_1G00050120 Rroxscaffold_1G00050180 Rroxscaffold_1G00050190 Rroxscaffold_1G00050220 Rroxscaffold_1G00050270 Rroxscaffold_1G00050300
rosa_rugosa Rorug04G0065200 Rorug05G0114900 Rorug05G0115000 Rorug05G0115100 Rorug05G0120100 Rorug05G0238900
rosa_samantha Rh5AG207800 Rh5AG208000 Rh5AG208300 Rh5AG208400 Rh5AG208800 Rh5AG294900 Rh5AG295000 Rh5AG295400 Rh5CG230400 Rh7AG347800
rosa_wichuraiana Rw0G005370 Rw0G012460 Rw0G019060 Rw5G018910 Rw5G018920 Rw5G018930 Rw5G018940 Rw5G018960 Rw5G018970 Rw5G018980 Rw5G018990 Rw5G019000 Rw7G029840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 261
AarI CACCTGC 1 cut(s) 544
Acc36I ACCTGC 1 cut(s) 544
AccB1I GGYRCC 1 cut(s) 226
AclWI GGATC 5 cut(s) 32, 404, 408, 417, 560
AcoI YGGCCR 1 cut(s) 159
AcuI CTGAAG 2 cut(s) 474, 498
AfiI CCNNNNNNNGG 2 cut(s) 64, 419
AgsI TTSAA 4 cut(s) 79, 533, 614, 626
AluBI AGCT 3 cut(s) 104, 146, 166
AluI AGCT 3 cut(s) 104, 146, 166
Alw26I GTCTC 2 cut(s) 87, 649
AlwI GGATC 5 cut(s) 32, 404, 408, 417, 560
AlwNI CAGNNNCTG 1 cut(s) 27
AoxI GGCC 2 cut(s) 159, 500
AsuC2I CCSGG 1 cut(s) 199
AsuHPI GGTGA 3 cut(s) 532, 568, 650
BaeGI GKGCMC 1 cut(s) 370
BalI TGGCCA 1 cut(s) 161
BamHI GGATCC 1 cut(s) 409
BanI GGYRCC 1 cut(s) 226
BbsI GAAGAC 2 cut(s) 480, 504
BcnI CCSGG 1 cut(s) 199
BcoDI GTCTC 2 cut(s) 87, 649
BfaI CTAG 3 cut(s) 215, 404, 419
BfuAI ACCTGC 1 cut(s) 544
Bme1390I CCNGG 1 cut(s) 199
BmiI GGNNCC 2 cut(s) 228, 411
BmrFI CCNGG 1 cut(s) 199
BpiI GAAGAC 2 cut(s) 480, 504
BpuEI CTTGAG 1 cut(s) 665
BpuMI CCSGG 1 cut(s) 199
BsaBI GATNNNNATC 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 413
BsaXI ACNNNNNCTCC 2 cut(s) 276, 306
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 419
Bse1I ACTGG 1 cut(s) 618
Bse3DI GCAATG 2 cut(s) 246, 603
Bse8I GATNNNNATC 1 cut(s) 126
BseDI CCNNGG 1 cut(s) 413
BseJI GATNNNNATC 1 cut(s) 126
BseLI CCNNNNNNNGG 2 cut(s) 64, 419
BseMI GCAATG 2 cut(s) 246, 603
BseMII CTCAG 1 cut(s) 438
BseNI ACTGG 1 cut(s) 618
BseRI GAGGAG 1 cut(s) 328
BseSI GKGCMC 1 cut(s) 370
BshFI GGCC 2 cut(s) 161, 502
BshNI GGYRCC 1 cut(s) 226
BsiSI CCGG 1 cut(s) 199
BslI CCNNNNNNNGG 2 cut(s) 64, 419
BsmAI GTCTC 2 cut(s) 87, 649
BsnI GGCC 2 cut(s) 161, 502
Bsp1286I GDGCHC 1 cut(s) 370
Bsp143I GATC 5 cut(s) 24, 81, 400, 409, 565
BspANI GGCC 2 cut(s) 161, 502
BspCNI CTCAG 1 cut(s) 437
BspLI GGNNCC 2 cut(s) 228, 411
BspMI ACCTGC 1 cut(s) 544
BspPI GGATC 5 cut(s) 32, 404, 408, 417, 560
BspT107I GGYRCC 1 cut(s) 226
BsrDI GCAATG 2 cut(s) 246, 603
BsrI ACTGG 1 cut(s) 618
BssECI CCNNGG 1 cut(s) 413
BssMI GATC 5 cut(s) 24, 81, 400, 409, 565
BssT1I CCWWGG 1 cut(s) 413
Bst6I CTCTTC 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 424
BstEII GGTNACC 1 cut(s) 638
BstENI CCTNNNNNAGG 1 cut(s) 62
BstKTI GATC 5 cut(s) 27, 84, 403, 412, 568
BstMAI GTCTC 2 cut(s) 87, 649
BstMBI GATC 5 cut(s) 24, 81, 400, 409, 565
BstMWI GCNNNNNNNGC 1 cut(s) 16
BstPI GGTNACC 1 cut(s) 638
BstSCI CCNGG 1 cut(s) 197
BstSLI GKGCMC 1 cut(s) 370
BstV2I GAAGAC 2 cut(s) 480, 504
BstX2I RGATCY 3 cut(s) 24, 400, 409
BstYI RGATCY 3 cut(s) 24, 400, 409
BsuRI GGCC 2 cut(s) 161, 502
BtsIMutI CAGTG 2 cut(s) 313, 522
BveI ACCTGC 1 cut(s) 544
CaiI CAGNNNCTG 1 cut(s) 27
CspCI CAANNNNNGTGG 2 cut(s) 444, 479
CviAII CATG 3 cut(s) 62, 482, 508
DdeI CTNAG 1 cut(s) 424
DpnI GATC 5 cut(s) 26, 83, 402, 411, 567
DpnII GATC 5 cut(s) 24, 81, 400, 409, 565
EaeI YGGCCR 1 cut(s) 159
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 413
Eco147I AGGCCT 1 cut(s) 502
Eco57I CTGAAG 2 cut(s) 474, 498
Eco91I GGTNACC 1 cut(s) 638
EcoNI CCTNNNNNAGG 1 cut(s) 62
EcoO65I GGTNACC 1 cut(s) 638
EcoT14I CCWWGG 1 cut(s) 413
ErhI CCWWGG 1 cut(s) 413
FaeI CATG 3 cut(s) 65, 485, 511
FatI CATG 3 cut(s) 61, 481, 507
FspBI CTAG 3 cut(s) 215, 404, 419
HaeIII GGCC 2 cut(s) 161, 502
HapII CCGG 1 cut(s) 199
Hin1II CATG 3 cut(s) 65, 485, 511
HindIII AAGCTT 1 cut(s) 164
HinfI GANTC 2 cut(s) 68, 649
HpaII CCGG 1 cut(s) 199
HphI GGTGA 3 cut(s) 532, 568, 650
Hpy188I TCNGA 5 cut(s) 255, 337, 427, 565, 654
HpyAV CCTTC 2 cut(s) 513, 527
HpyCH4V TGCA 2 cut(s) 239, 596
HpyF10VI GCNNNNNNNGC 1 cut(s) 16
HpyF3I CTNAG 1 cut(s) 424
Hsp92II CATG 3 cut(s) 65, 485, 511
Kzo9I GATC 5 cut(s) 24, 81, 400, 409, 565
LmnI GCTCC 2 cut(s) 315, 338
LpnPI CCDG 8 cut(s) 7, 192, 212, 243, 383, 523, 539, 631
MaeI CTAG 3 cut(s) 215, 404, 419
MaeIII GTNAC 1 cut(s) 638
MalI GATC 5 cut(s) 26, 83, 402, 411, 567
MboI GATC 5 cut(s) 24, 81, 400, 409, 565
MboII GAAGA 9 cut(s) 91, 185, 347, 350, 353, 365, 480, 504, 638
MflI RGATCY 3 cut(s) 24, 400, 409
MhlI GDGCHC 1 cut(s) 370
MlsI TGGCCA 1 cut(s) 161
MluCI AATT 1 cut(s) 361
MluNI TGGCCA 1 cut(s) 161
MlyI GAGTC 1 cut(s) 658
MmeI TCCRAC 1 cut(s) 276
MnlI CCTC 8 cut(s) 58, 68, 169, 239, 306, 380, 586, 594
Mox20I TGGCCA 1 cut(s) 161
MscI TGGCCA 1 cut(s) 161
MseI TTAA 3 cut(s) 99, 360, 432
Msp20I TGGCCA 1 cut(s) 161
MspA1I CMGCKG 1 cut(s) 146
MspI CCGG 1 cut(s) 199
MspR9I CCNGG 1 cut(s) 199
MwoI GCNNNNNNNGC 1 cut(s) 16
NciI CCSGG 1 cut(s) 199
NdeII GATC 5 cut(s) 24, 81, 400, 409, 565
NlaIII CATG 3 cut(s) 65, 485, 511
NlaIV GGNNCC 2 cut(s) 228, 411
NmuCI GTSAC 1 cut(s) 638
PaqCI CACCTGC 1 cut(s) 544
PceI AGGCCT 1 cut(s) 502
PfeI GAWTC 1 cut(s) 68
PleI GAGTC 1 cut(s) 657
PpsI GAGTC 1 cut(s) 657
PsiI TTATAA 1 cut(s) 261
PspEI GGTNACC 1 cut(s) 638
PspN4I GGNNCC 2 cut(s) 228, 411
PstNI CAGNNNCTG 1 cut(s) 27
PsuI RGATCY 3 cut(s) 24, 400, 409
PvuII CAGCTG 1 cut(s) 146
SaqAI TTAA 3 cut(s) 99, 360, 432
Sau3AI GATC 5 cut(s) 24, 81, 400, 409, 565
SchI GAGTC 1 cut(s) 658
ScrFI CCNGG 1 cut(s) 199
SduI GDGCHC 1 cut(s) 370
SmlI CTYRAG 1 cut(s) 644
SmoI CTYRAG 1 cut(s) 644
Sse9I AATT 1 cut(s) 361
SseBI AGGCCT 1 cut(s) 502
SspMI CTAG 3 cut(s) 215, 404, 419
StuI AGGCCT 1 cut(s) 502
StyD4I CCNGG 1 cut(s) 197
StyI CCWWGG 1 cut(s) 413
TaqI TCGA 1 cut(s) 120
TasI AATT 1 cut(s) 361
TfiI GAWTC 1 cut(s) 68
Tru1I TTAA 3 cut(s) 99, 360, 432
Tru9I TTAA 3 cut(s) 99, 360, 432
TscAI CASTG 2 cut(s) 313, 522
TseFI GTSAC 1 cut(s) 638
Tsp45I GTSAC 1 cut(s) 638
TspDTI ATGAA 3 cut(s) 77, 186, 600
TspRI CASTG 2 cut(s) 313, 522
XagI CCTNNNNNAGG 1 cut(s) 62
XcmI CCANNNNNNNNNTGG 1 cut(s) 514
XspI CTAG 3 cut(s) 215, 404, 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.