Rh5AG207800

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000292
Physical Location & Seq
Reverse (-)
24488010 .. 24491345
3336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG207800.1

Sequence Viewer

Length: 402 bp
ATGGACAAATGGAAGGCACTTCTTCTAAAAGAGAGAGCAAGTTTGTTGGACCTGGTGGATCCAAGGTTGGGCTCAGAGTTTAACAAAGAAGAGATGATTACTACTATCAATATAGCTCTCCTTTGTGCTAATGCTTCTTCAGCAGTTAGGCCCGCCATGTCTTCAGTGGTGAGCATGCTTGAAGGTAGAGCTTCTGTTCAGGAGGTGGTCTTTGATCCAAATGCCTCAATTAATGAAATCAATGCGATGAGGAAACATTTTCAATCCACTATTGGAGAAAACAATGGTGACCCTGAGAGTCAGAGACAAACTATGTCAATTGAAGGGTCGTGGACTGCTTCATCTACATCTGCTCAAGACCTCTATCCGATCGCGTTCTCTTTCTCTCTCTACTTTTACTAG

Protein Analysis

133

Amino Acids

14.73

Weight (kDa)

4.8

Isoelectric Point (pI)

46.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000292)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53420 AT3G14840
fragaria_vesca FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17851
malus_domestica MD03G1246600.v1.1 MD06G1045200.v1.1 MD06G1045400.v1.1 MD11G1267800.v1.1 MD11G1267900.v1.1 MD11G1268100.v1.1 MD11G1268300.v1.1 MD11G1268500.v1.1 MD11G1268600.v1.1
prunus_persica Prupe.4G157700_v2.0.a1 Prupe.4G157700_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1
pyrus_communis pycom03g19540 pycom11g23600 pycom11g23630 pycom11g23690 pycom11g23720 pycom11g23730 pycom11g23740 pycom11g23750
rosa_chinensis RchiOBHm_Chr0c40g0503411 RchiOBHm_Chr0c40g0503421 RchiOBHm_Chr5g0029631 RchiOBHm_Chr5g0029661 RchiOBHm_Chr5g0029701 RchiOBHm_Chr5g0029741 RchiOBHm_Chr5g0029771 RchiOBHm_Chr5g0029781 RchiOBHm_Chr5g0029811 RchiOBHm_Chr5g0029851 RchiOBHm_Chr5g0029871 RchiOBHm_Chr5g0029891 RchiOBHm_Chr7g0222221
rosa_laevigata RLG00000017380 RLG00000032873 RLG00000033188 RLG00000033190 RLG00000033192 RLG00000033193 RLG00000033194 RLG00000033196 RLG00000033199 RLG00000033238
rosa_multiflora Rmu_co8359987.1_g000001 Rmu_co8444909.1_g000001 Rmu_sc0001608.1_g000007 Rmu_sc0001608.1_g000009 Rmu_sc0001608.1_g000013 Rmu_sc0001608.1_g000018 Rmu_sc0001608.1_g000023 Rmu_sc0001608.1_g000040 Rmu_sc0003238.1_g000016 Rmu_sc0003368.1_g000026 Rmu_sc0003368.1_g000034 Rmu_sc0003368.1_g000043 Rmu_sc0003368.1_g000047 Rmu_sc0003368.1_g000052 Rmu_sc0003368.1_g000054 Rmu_sc0004963.1_g000001
rosa_roxburghii Rroxscaffold_1G00050080 Rroxscaffold_1G00050090 Rroxscaffold_1G00050110 Rroxscaffold_1G00050120 Rroxscaffold_1G00050180 Rroxscaffold_1G00050190 Rroxscaffold_1G00050220 Rroxscaffold_1G00050270 Rroxscaffold_1G00050300
rosa_rugosa Rorug04G0065200 Rorug05G0114900 Rorug05G0115000 Rorug05G0115100 Rorug05G0120100 Rorug05G0238900
rosa_samantha Rh5AG207800 Rh5AG208000 Rh5AG208300 Rh5AG208400 Rh5AG208800 Rh5AG294900 Rh5AG295000 Rh5AG295400 Rh5CG230400 Rh7AG347800
rosa_wichuraiana Rw0G005370 Rw0G012460 Rw0G019060 Rw5G018910 Rw5G018920 Rw5G018930 Rw5G018940 Rw5G018960 Rw5G018970 Rw5G018980 Rw5G018990 Rw5G019000 Rw7G029840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 374
AciI CCGC 1 cut(s) 153
AclWI GGATC 3 cut(s) 53, 66, 209
AcuI CTGAAG 2 cut(s) 123, 147
AfiI CCNNNNNNNGG 1 cut(s) 68
AgsI TTSAA 3 cut(s) 182, 263, 323
AjnI CCWGG 1 cut(s) 51
AluBI AGCT 2 cut(s) 116, 191
AluI AGCT 2 cut(s) 116, 191
Alw26I GTCTC 1 cut(s) 298
AlwI GGATC 3 cut(s) 53, 66, 209
AoxI GGCC 1 cut(s) 149
AseI ATTAAT 1 cut(s) 231
AspS9I GGNCC 2 cut(s) 49, 150
AsuHPI GGTGA 2 cut(s) 181, 299
AvaII GGWCC 1 cut(s) 49
BamHI GGATCC 1 cut(s) 58
BanII GRGCYC 1 cut(s) 74
BbsI GAAGAC 1 cut(s) 153
BciT130I CCWGG 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 298
BfaI CTAG 1 cut(s) 400
Bme1390I CCNGG 1 cut(s) 53
Bme18I GGWCC 1 cut(s) 49
BmgT120I GGNCC 2 cut(s) 49, 150
BmiI GGNNCC 1 cut(s) 60
BmrFI CCNGG 1 cut(s) 53
BpiI GAAGAC 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 339
BsaJI CCNNGG 1 cut(s) 62
Bsc4I CCNNNNNNNGG 1 cut(s) 68
BseBI CCWGG 1 cut(s) 53
BseDI CCNNGG 1 cut(s) 62
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMII CTCAG 2 cut(s) 87, 285
Bsh1236I CGCG 1 cut(s) 374
Bsh1285I CGRYCG 1 cut(s) 372
BshFI GGCC 1 cut(s) 151
BsiEI CGRYCG 1 cut(s) 372
BslI CCNNNNNNNGG 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 298
BsnI GGCC 1 cut(s) 151
Bsp1286I GDGCHC 1 cut(s) 74
Bsp143I GATC 3 cut(s) 58, 214, 369
BspACI CCGC 1 cut(s) 153
BspANI GGCC 1 cut(s) 151
BspCNI CTCAG 2 cut(s) 86, 286
BspFNI CGCG 1 cut(s) 374
BspLI GGNNCC 1 cut(s) 60
BspPI GGATC 3 cut(s) 53, 66, 209
BssECI CCNNGG 1 cut(s) 62
BssMI GATC 3 cut(s) 58, 214, 369
BssT1I CCWWGG 1 cut(s) 62
Bst2UI CCWGG 1 cut(s) 53
Bst6I CTCTTC 1 cut(s) 84
BstC8I GCNNGC 2 cut(s) 153, 176
BstDEI CTNAG 2 cut(s) 73, 294
BstEII GGTNACC 1 cut(s) 287
BstFNI CGCG 1 cut(s) 374
BstKTI GATC 3 cut(s) 61, 217, 372
BstMAI GTCTC 1 cut(s) 298
BstMBI GATC 3 cut(s) 58, 214, 369
BstMCI CGRYCG 1 cut(s) 372
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstNI CCWGG 1 cut(s) 53
BstNSI RCATGY 1 cut(s) 178
BstPI GGTNACC 1 cut(s) 287
BstSCI CCNGG 1 cut(s) 51
BstUI CGCG 1 cut(s) 374
BstV2I GAAGAC 1 cut(s) 153
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
BsuRI GGCC 1 cut(s) 151
BtgZI GCGATG 1 cut(s) 260
BtsIMutI CAGTG 1 cut(s) 171
Cac8I GCNNGC 2 cut(s) 153, 176
Cfr13I GGNCC 2 cut(s) 49, 150
CsiI ACCWGGT 1 cut(s) 51
CviAII CATG 2 cut(s) 157, 175
CviJI RGCY 4 cut(s) 72, 116, 151, 191
CviKI_1 RGCY 4 cut(s) 72, 116, 151, 191
DdeI CTNAG 2 cut(s) 73, 294
DpnI GATC 3 cut(s) 60, 216, 371
DpnII GATC 3 cut(s) 58, 214, 369
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco130I CCWWGG 1 cut(s) 62
Eco24I GRGCYC 1 cut(s) 74
Eco47I GGWCC 1 cut(s) 49
Eco57I CTGAAG 2 cut(s) 123, 147
Eco91I GGTNACC 1 cut(s) 287
EcoO65I GGTNACC 1 cut(s) 287
EcoRII CCWGG 1 cut(s) 51
EcoT14I CCWWGG 1 cut(s) 62
EcoT38I GRGCYC 1 cut(s) 74
ErhI CCWWGG 1 cut(s) 62
FaeI CATG 2 cut(s) 160, 178
FaiI YATR 4 cut(s) 113, 158, 176, 314
FatI CATG 2 cut(s) 156, 174
FauI CCCGC 1 cut(s) 160
FriOI GRGCYC 1 cut(s) 74
FspBI CTAG 1 cut(s) 400
HaeIII GGCC 1 cut(s) 151
Hin1II CATG 2 cut(s) 160, 178
HinfI GANTC 1 cut(s) 298
HphI GGTGA 2 cut(s) 181, 299
Hpy166II GTNNAC 1 cut(s) 333
Hpy188I TCNGA 3 cut(s) 76, 303, 369
Hpy188III TCNNGA 2 cut(s) 200, 356
Hpy8I GTNNAC 1 cut(s) 333
HpyAV CCTTC 3 cut(s) 7, 176, 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpyF3I CTNAG 2 cut(s) 73, 294
Hsp92II CATG 2 cut(s) 160, 178
Kzo9I GATC 3 cut(s) 58, 214, 369
LpnPI CCDG 4 cut(s) 38, 65, 185, 306
MabI ACCWGGT 1 cut(s) 51
MaeI CTAG 1 cut(s) 400
MaeIII GTNAC 1 cut(s) 287
MalI GATC 3 cut(s) 60, 216, 371
MboI GATC 3 cut(s) 58, 214, 369
MboII GAAGA 4 cut(s) 14, 101, 129, 153
MfeI CAATTG 1 cut(s) 318
MflI RGATCY 1 cut(s) 58
MhlI GDGCHC 1 cut(s) 74
MluCI AATT 2 cut(s) 228, 318
MlyI GAGTC 1 cut(s) 307
MmeI TCCRAC 1 cut(s) 27
MnlI CCTC 4 cut(s) 196, 235, 243, 371
MseI TTAA 2 cut(s) 81, 231
MspR9I CCNGG 1 cut(s) 53
MunI CAATTG 1 cut(s) 318
MvaI CCWGG 1 cut(s) 53
MvnI CGCG 1 cut(s) 374
MwoI GCNNNNNNNGC 1 cut(s) 140
NdeII GATC 3 cut(s) 58, 214, 369
NlaIII CATG 2 cut(s) 160, 178
NlaIV GGNNCC 1 cut(s) 60
NmuCI GTSAC 1 cut(s) 287
NspI RCATGY 1 cut(s) 178
PaeI GCATGC 1 cut(s) 178
Ple19I CGATCG 1 cut(s) 372
PleI GAGTC 1 cut(s) 306
PpsI GAGTC 1 cut(s) 306
PshBI ATTAAT 1 cut(s) 231
Psp6I CCWGG 1 cut(s) 51
PspEI GGTNACC 1 cut(s) 287
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 1 cut(s) 60
PspPI GGNCC 2 cut(s) 49, 150
PsuI RGATCY 1 cut(s) 58
PvuI CGATCG 1 cut(s) 372
SaqAI TTAA 2 cut(s) 81, 231
Sau3AI GATC 3 cut(s) 58, 214, 369
Sau96I GGNCC 2 cut(s) 49, 150
SchI GAGTC 1 cut(s) 307
ScrFI CCNGG 1 cut(s) 53
SduI GDGCHC 1 cut(s) 74
SetI ASST 7 cut(s) 54, 68, 118, 187, 193, 207, 363
SexAI ACCWGGT 1 cut(s) 51
SinI GGWCC 1 cut(s) 49
SmlI CTYRAG 1 cut(s) 354
SmoI CTYRAG 1 cut(s) 354
SphI GCATGC 1 cut(s) 178
Sse9I AATT 2 cut(s) 228, 318
SsiI CCGC 1 cut(s) 153
SspMI CTAG 1 cut(s) 400
StyD4I CCNGG 1 cut(s) 51
StyI CCWWGG 1 cut(s) 62
TasI AATT 2 cut(s) 228, 318
Tru1I TTAA 2 cut(s) 81, 231
Tru9I TTAA 2 cut(s) 81, 231
TscAI CASTG 1 cut(s) 171
TseFI GTSAC 1 cut(s) 287
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 2 cut(s) 249, 330
TspRI CASTG 1 cut(s) 171
VpaK11BI GGWCC 1 cut(s) 49
VspI ATTAAT 1 cut(s) 231
XceI RCATGY 1 cut(s) 178
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XspI CTAG 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.