Rh5AG208300

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000292
Physical Location & Seq
Reverse (-)
24552922 .. 24560233
7312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG208300.1

Sequence Viewer

Length: 1074 bp
ATGTTCAACGCACAGCAATGGAGCCATCCCAATTCTAAAAACTCTTGTTTGTTTTTCGTTTCCGTTGTGCTTTTCTTTTCACTTTTGAAAGCGCAGAATCTGACAGGACAACTCCCGAAGGAGCTGATCAACCTCCCCTATATCCAAGAAATGACCATCGATTTCAATCGTTTATCTGGAGTTCTTCCTGCGGAGCTTGGAAATTTGTCTAGCATAGAAAGAATGCTTCTTACCTCGAACAATTTTACTGGGGAGTTGCCAGAAACATTTGCGAAGCTTACCACCTTAACTGACTTGTTCTTAACTGGAAACATGCTGACCGGAACTGTGCCAGCTGATTGGATGAAAGCCAATAGTATTGATCTTTCATATAACAAATTCACCATCAACTCAAATGATGAGAATTGTGAACCACGAGATGGCTTGAACTTGTTTGCAAGCTCTTCAGGTGGCAATAGTTCATTTGTTTCATGTTTACCACTTGCAAAATGTGTAAAAAACTTTCCACCCCCTCAAGAAACCCAGCCAGGAGGTGGAAGCAGCGGTATATCAGCAGGTGCAGTGGTTGGAATCGTGGCTGGAGGAGTCTTCATTATATTACTGGTTTTAGGAATTCTCTGGTGGAAAGGGTTCATAGGACCAACAAATACTTTAGAACAAGGTATTTGTACATCTTTTCGTGCACTTATTCTAAAGGAGAGAGGGAGTTTGTTGGACCTAGTGGATCCAAGGCTAGGCTCAGAGTTTAACAAAGAACAGATGATTACTACAATCAATGTGGCTCTCCTTTGCTCTCATGTGTCTTCAGCAGTTAGGCCTTCCATGTCTTCAGTGGTGAAAATGCTTGAAGGCAGGGCTTCGGTTCAGGAGGTGATCTCTGATCCAAATGCCTCAAACAATGAAATCAATGCAATGAGGAAACATTTTCAATCCAGTTTCGAAGAAAACAATGGTGACCTTGAGAGTCAGAGACAAACTATGTCAATTGAACCATCGTGGACTACTTCATCTACATCTGCTCAAGATCTCTATTCCGTCCATCCTGATTCCAGTTATTGGGAGAACAGAAAATAG

Protein Analysis

357

Amino Acids

39.04

Weight (kDa)

5.14

Isoelectric Point (pI)

39.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 48 - 106 2.8e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000292)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53420 AT3G14840
fragaria_vesca FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17851
malus_domestica MD03G1246600.v1.1 MD06G1045200.v1.1 MD06G1045400.v1.1 MD11G1267800.v1.1 MD11G1267900.v1.1 MD11G1268100.v1.1 MD11G1268300.v1.1 MD11G1268500.v1.1 MD11G1268600.v1.1
prunus_persica Prupe.4G157700_v2.0.a1 Prupe.4G157700_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1
pyrus_communis pycom03g19540 pycom11g23600 pycom11g23630 pycom11g23690 pycom11g23720 pycom11g23730 pycom11g23740 pycom11g23750
rosa_chinensis RchiOBHm_Chr0c40g0503411 RchiOBHm_Chr0c40g0503421 RchiOBHm_Chr5g0029631 RchiOBHm_Chr5g0029661 RchiOBHm_Chr5g0029701 RchiOBHm_Chr5g0029741 RchiOBHm_Chr5g0029771 RchiOBHm_Chr5g0029781 RchiOBHm_Chr5g0029811 RchiOBHm_Chr5g0029851 RchiOBHm_Chr5g0029871 RchiOBHm_Chr5g0029891 RchiOBHm_Chr7g0222221
rosa_laevigata RLG00000017380 RLG00000032873 RLG00000033188 RLG00000033190 RLG00000033192 RLG00000033193 RLG00000033194 RLG00000033196 RLG00000033199 RLG00000033238
rosa_multiflora Rmu_co8359987.1_g000001 Rmu_co8444909.1_g000001 Rmu_sc0001608.1_g000007 Rmu_sc0001608.1_g000009 Rmu_sc0001608.1_g000013 Rmu_sc0001608.1_g000018 Rmu_sc0001608.1_g000023 Rmu_sc0001608.1_g000040 Rmu_sc0003238.1_g000016 Rmu_sc0003368.1_g000026 Rmu_sc0003368.1_g000034 Rmu_sc0003368.1_g000043 Rmu_sc0003368.1_g000047 Rmu_sc0003368.1_g000052 Rmu_sc0003368.1_g000054 Rmu_sc0004963.1_g000001
rosa_roxburghii Rroxscaffold_1G00050080 Rroxscaffold_1G00050090 Rroxscaffold_1G00050110 Rroxscaffold_1G00050120 Rroxscaffold_1G00050180 Rroxscaffold_1G00050190 Rroxscaffold_1G00050220 Rroxscaffold_1G00050270 Rroxscaffold_1G00050300
rosa_rugosa Rorug04G0065200 Rorug05G0114900 Rorug05G0115000 Rorug05G0115100 Rorug05G0120100 Rorug05G0238900
rosa_samantha Rh5AG207800 Rh5AG208000 Rh5AG208300 Rh5AG208400 Rh5AG208800 Rh5AG294900 Rh5AG295000 Rh5AG295400 Rh5CG230400 Rh7AG347800
rosa_wichuraiana Rw0G005370 Rw0G012460 Rw0G019060 Rw5G018910 Rw5G018920 Rw5G018930 Rw5G018940 Rw5G018960 Rw5G018970 Rw5G018980 Rw5G018990 Rw5G019000 Rw7G029840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 545
Acc36I ACCTGC 1 cut(s) 545
AccB7I CCANNNNNTGG 3 cut(s) 419, 533, 1056
AciI CCGC 2 cut(s) 191, 543
AclWI GGATC 3 cut(s) 719, 732, 875
AcsI RAATTY 3 cut(s) 202, 377, 612
AcuI CTGAAG 3 cut(s) 429, 789, 813
AfaI GTAC 1 cut(s) 670
AfiI CCNNNNNNNGG 4 cut(s) 419, 533, 734, 1056
AgsI TTSAA 7 cut(s) 7, 88, 166, 427, 848, 929, 989
AjnI CCWGG 1 cut(s) 526
AluBI AGCT 5 cut(s) 124, 196, 277, 335, 441
AluI AGCT 5 cut(s) 124, 196, 277, 335, 441
Alw21I GWGCWC 1 cut(s) 685
Alw26I GTCTC 1 cut(s) 964
Alw44I GTGCAC 1 cut(s) 681
AlwI GGATC 3 cut(s) 719, 732, 875
AlwNI CAGNNNCTG 1 cut(s) 100
AoxI GGCC 1 cut(s) 815
ApaLI GTGCAC 1 cut(s) 681
ApeKI GCWGC 1 cut(s) 540
ApoI RAATTY 3 cut(s) 202, 377, 612
Asp700I GAANNNNTTC 1 cut(s) 629
AspLEI GCGC 1 cut(s) 94
AspS9I GGNCC 2 cut(s) 638, 715
AsuHPI GGTGA 4 cut(s) 373, 847, 883, 965
AsuII TTCGAA 1 cut(s) 939
AvaII GGWCC 2 cut(s) 638, 715
BaeGI GKGCMC 1 cut(s) 685
BamHI GGATCC 1 cut(s) 724
BauI CACGAG 1 cut(s) 414
BbsI GAAGAC 3 cut(s) 580, 795, 819
Bbv12I GWGCWC 1 cut(s) 685
BbvI GCAGC 1 cut(s) 552
BccI CCATC 6 cut(s) 33, 164, 392, 413, 1000, 1047
BciT130I CCWGG 1 cut(s) 528
BclI TGATCA 1 cut(s) 126
BcoDI GTCTC 1 cut(s) 964
BfaI CTAG 3 cut(s) 210, 719, 734
BfuAI ACCTGC 1 cut(s) 545
BglII AGATCT 1 cut(s) 1024
BisI GCNGC 1 cut(s) 541
BlsI GCNGC 1 cut(s) 542
Bme1390I CCNGG 1 cut(s) 528
Bme18I GGWCC 2 cut(s) 638, 715
BmgT120I GGNCC 2 cut(s) 638, 715
BmiI GGNNCC 2 cut(s) 23, 726
BmrFI CCNGG 1 cut(s) 528
BmrI ACTGGG 1 cut(s) 258
BmuI ACTGGG 1 cut(s) 258
BpiI GAAGAC 3 cut(s) 580, 795, 819
BplI GAGNNNNNCTC 2 cut(s) 860, 892
BpmI CTGGAG 2 cut(s) 198, 600
Bpu14I TTCGAA 1 cut(s) 939
BpuEI CTTGAG 3 cut(s) 498, 980, 1005
Bsa29I ATCGAT 1 cut(s) 159
BsaBI GATNNNNATC 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 728
BsaWI WCCGGW 1 cut(s) 320
Bsc4I CCNNNNNNNGG 4 cut(s) 419, 533, 734, 1056
Bse1I ACTGG 5 cut(s) 253, 310, 606, 933, 1050
Bse3DI GCAATG 2 cut(s) 23, 918
Bse8I GATNNNNATC 1 cut(s) 165
BseBI CCWGG 1 cut(s) 528
BseCI ATCGAT 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 728
BseGI GGATG 3 cut(s) 25, 348, 1039
BseJI GATNNNNATC 1 cut(s) 165
BseLI CCNNNNNNNGG 4 cut(s) 419, 533, 734, 1056
BseMI GCAATG 2 cut(s) 23, 918
BseMII CTCAG 1 cut(s) 753
BseNI ACTGG 5 cut(s) 253, 310, 606, 933, 1050
BseRI GAGGAG 1 cut(s) 597
BseSI GKGCMC 1 cut(s) 685
BseXI GCAGC 1 cut(s) 552
BseYI CCCAGC 1 cut(s) 522
BsgI GTGCAG 1 cut(s) 579
BshFI GGCC 1 cut(s) 817
BshVI ATCGAT 1 cut(s) 159
BsiHKAI GWGCWC 1 cut(s) 685
BsiSI CCGG 1 cut(s) 321
BslI CCNNNNNNNGG 4 cut(s) 419, 533, 734, 1056
BsmAI GTCTC 1 cut(s) 964
BsmI GAATGC 1 cut(s) 228
BsnI GGCC 1 cut(s) 817
Bsp119I TTCGAA 1 cut(s) 939
Bsp1286I GDGCHC 1 cut(s) 685
Bsp1407I TGTACA 1 cut(s) 668
Bsp143I GATC 6 cut(s) 126, 361, 724, 873, 880, 1024
BspACI CCGC 2 cut(s) 191, 543
BspANI GGCC 1 cut(s) 817
BspCNI CTCAG 1 cut(s) 752
BspDI ATCGAT 1 cut(s) 159
BspLI GGNNCC 2 cut(s) 23, 726
BspMI ACCTGC 1 cut(s) 545
BspPI GGATC 3 cut(s) 719, 732, 875
BspQI GCTCTTC 1 cut(s) 448
BspT104I TTCGAA 1 cut(s) 939
BsrDI GCAATG 2 cut(s) 23, 918
BsrGI TGTACA 1 cut(s) 668
BsrI ACTGG 5 cut(s) 253, 310, 606, 933, 1050
BssECI CCNNGG 1 cut(s) 728
BssMI GATC 6 cut(s) 126, 361, 724, 873, 880, 1024
BssSI CACGAG 1 cut(s) 414
BssT1I CCWWGG 1 cut(s) 728
Bst2BI CACGAG 1 cut(s) 414
Bst2UI CCWGG 1 cut(s) 528
Bst4CI ACNGT 1 cut(s) 328
Bst6I CTCTTC 1 cut(s) 448
BstAUI TGTACA 1 cut(s) 668
BstBI TTCGAA 1 cut(s) 939
BstC8I GCNNGC 2 cut(s) 333, 439
BstDEI CTNAG 1 cut(s) 739
BstEII GGTNACC 1 cut(s) 953
BstF5I GGATG 3 cut(s) 25, 348, 1039
BstHHI GCGC 1 cut(s) 94
BstKTI GATC 6 cut(s) 129, 364, 727, 876, 883, 1027
BstMAI GTCTC 1 cut(s) 964
BstMBI GATC 6 cut(s) 126, 361, 724, 873, 880, 1024
BstNI CCWGG 1 cut(s) 528
BstNSI RCATGY 1 cut(s) 316
BstPI GGTNACC 1 cut(s) 953
BstSCI CCNGG 1 cut(s) 526
BstSLI GKGCMC 1 cut(s) 685
BstV1I GCAGC 1 cut(s) 552
BstV2I GAAGAC 3 cut(s) 580, 795, 819
BstX2I RGATCY 2 cut(s) 724, 1024
BstXI CCANNNNNNTGG 1 cut(s) 339
BstYI RGATCY 2 cut(s) 724, 1024
Bsu15I ATCGAT 1 cut(s) 159
BsuRI GGCC 1 cut(s) 817
BsuTUI ATCGAT 1 cut(s) 159
BtsCI GGATG 3 cut(s) 25, 348, 1039
BtsI GCAGTG 1 cut(s) 567
BtsIMutI CAGTG 2 cut(s) 567, 837
BveI ACCTGC 1 cut(s) 545
Cac8I GCNNGC 2 cut(s) 333, 439
CaiI CAGNNNCTG 1 cut(s) 100
CfoI GCGC 1 cut(s) 94
Cfr13I GGNCC 2 cut(s) 638, 715
ClaI ATCGAT 1 cut(s) 159
Csp6I GTAC 1 cut(s) 669
CspCI CAANNNNNGTGG 2 cut(s) 759, 794
CviAII CATG 4 cut(s) 313, 471, 797, 823
CviQI GTAC 1 cut(s) 669
DdeI CTNAG 1 cut(s) 739
DpnI GATC 6 cut(s) 128, 363, 726, 875, 882, 1026
DpnII GATC 6 cut(s) 126, 361, 724, 873, 880, 1024
Eam1104I CTCTTC 1 cut(s) 448
EarI CTCTTC 1 cut(s) 448
Eco130I CCWWGG 1 cut(s) 728
Eco147I AGGCCT 1 cut(s) 817
Eco47I GGWCC 2 cut(s) 638, 715
Eco57I CTGAAG 3 cut(s) 429, 789, 813
Eco91I GGTNACC 1 cut(s) 953
EcoO65I GGTNACC 1 cut(s) 953
EcoRI GAATTC 1 cut(s) 612
EcoRII CCWGG 1 cut(s) 526
EcoT14I CCWWGG 1 cut(s) 728
ErhI CCWWGG 1 cut(s) 728
FaeI CATG 4 cut(s) 316, 474, 800, 826
FatI CATG 4 cut(s) 312, 470, 796, 822
FbaI TGATCA 1 cut(s) 126
Fnu4HI GCNGC 1 cut(s) 541
FokI GGATG 3 cut(s) 12, 355, 1026
Fsp4HI GCNGC 1 cut(s) 541
FspBI CTAG 3 cut(s) 210, 719, 734
GlaI GCGC 1 cut(s) 93
GluI GCNGC 1 cut(s) 541
GsaI CCCAGC 1 cut(s) 526
GsuI CTGGAG 2 cut(s) 198, 600
HaeIII GGCC 1 cut(s) 817
HapII CCGG 1 cut(s) 321
HhaI GCGC 1 cut(s) 94
Hin1II CATG 4 cut(s) 316, 474, 800, 826
Hin6I GCGC 1 cut(s) 92
HinP1I GCGC 1 cut(s) 92
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 5 cut(s) 97, 570, 585, 964, 1046
HpaII CCGG 1 cut(s) 321
HphI GGTGA 4 cut(s) 373, 847, 883, 965
Hpy166II GTNNAC 4 cut(s) 410, 476, 683, 999
Hpy188I TCNGA 4 cut(s) 102, 742, 880, 969
Hpy188III TCNNGA 6 cut(s) 115, 177, 515, 866, 1022, 1043
Hpy8I GTNNAC 4 cut(s) 410, 476, 683, 999
HpyAV CCTTC 3 cut(s) 112, 828, 842
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4V TGCA 5 cut(s) 437, 485, 560, 683, 911
HpyF3I CTNAG 1 cut(s) 739
Hsp92II CATG 4 cut(s) 316, 474, 800, 826
HspAI GCGC 1 cut(s) 92
Ksp22I TGATCA 1 cut(s) 126
Kzo9I GATC 6 cut(s) 126, 361, 724, 873, 880, 1024
LguI GCTCTTC 1 cut(s) 448
LmnI GCTCC 3 cut(s) 21, 121, 193
Lsp1109I GCAGC 1 cut(s) 552
MaeI CTAG 3 cut(s) 210, 719, 734
MaeIII GTNAC 1 cut(s) 953
MalI GATC 6 cut(s) 128, 363, 726, 875, 882, 1026
MboI GATC 6 cut(s) 126, 361, 724, 873, 880, 1024
MboII GAAGA 6 cut(s) 176, 435, 580, 795, 819, 953
MfeI CAATTG 1 cut(s) 984
MflI RGATCY 2 cut(s) 724, 1024
MhlI GDGCHC 1 cut(s) 685
MluCI AATT 7 cut(s) 31, 202, 241, 377, 403, 612, 984
MlyI GAGTC 2 cut(s) 594, 973
MmeI TCCRAC 2 cut(s) 547, 693
MnlI CCTC 9 cut(s) 143, 244, 522, 524, 575, 695, 862, 901, 909
MroXI GAANNNNTTC 1 cut(s) 629
MseI TTAA 3 cut(s) 287, 302, 747
MslI CAYNNNNRTG 1 cut(s) 16
MspA1I CMGCKG 2 cut(s) 335, 543
MspI CCGG 1 cut(s) 321
MspR9I CCNGG 1 cut(s) 528
MunI CAATTG 1 cut(s) 984
Mva1269I GAATGC 1 cut(s) 228
MvaI CCWGG 1 cut(s) 528
NdeII GATC 6 cut(s) 126, 361, 724, 873, 880, 1024
NlaIII CATG 4 cut(s) 316, 474, 800, 826
NlaIV GGNNCC 2 cut(s) 23, 726
NmuCI GTSAC 1 cut(s) 953
NspI RCATGY 1 cut(s) 316
NspV TTCGAA 1 cut(s) 939
PaqCI CACCTGC 1 cut(s) 545
PceI AGGCCT 1 cut(s) 817
PciSI GCTCTTC 1 cut(s) 448
PctI GAATGC 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 629
PfeI GAWTC 3 cut(s) 97, 570, 1046
PflMI CCANNNNNTGG 3 cut(s) 419, 533, 1056
PkrI GCNGC 1 cut(s) 542
PleI GAGTC 2 cut(s) 593, 972
PpsI GAGTC 2 cut(s) 593, 972
Psp6I CCWGG 1 cut(s) 526
PspEI GGTNACC 1 cut(s) 953
PspFI CCCAGC 1 cut(s) 522
PspGI CCWGG 1 cut(s) 526
PspN4I GGNNCC 2 cut(s) 23, 726
PspPI GGNCC 2 cut(s) 638, 715
PstNI CAGNNNCTG 1 cut(s) 100
PsuI RGATCY 2 cut(s) 724, 1024
PvuII CAGCTG 1 cut(s) 335
RsaI GTAC 1 cut(s) 670
RsaNI GTAC 1 cut(s) 669
RseI CAYNNNNRTG 1 cut(s) 16
SapI GCTCTTC 1 cut(s) 448
SaqAI TTAA 3 cut(s) 287, 302, 747
SatI GCNGC 1 cut(s) 541
Sau3AI GATC 6 cut(s) 126, 361, 724, 873, 880, 1024
Sau96I GGNCC 2 cut(s) 638, 715
SchI GAGTC 2 cut(s) 594, 973
ScrFI CCNGG 1 cut(s) 528
SduI GDGCHC 1 cut(s) 685
SfuI TTCGAA 1 cut(s) 939
SinI GGWCC 2 cut(s) 638, 715
SmiMI CAYNNNNRTG 1 cut(s) 16
SmlI CTYRAG 3 cut(s) 513, 959, 1020
SmoI CTYRAG 3 cut(s) 513, 959, 1020
Sse9I AATT 7 cut(s) 31, 202, 241, 377, 403, 612, 984
SseBI AGGCCT 1 cut(s) 817
SsiI CCGC 2 cut(s) 191, 543
SspMI CTAG 3 cut(s) 210, 719, 734
StuI AGGCCT 1 cut(s) 817
StyD4I CCNGG 1 cut(s) 526
StyI CCWWGG 1 cut(s) 728
TaaI ACNGT 1 cut(s) 328
TaqI TCGA 3 cut(s) 159, 236, 939
TasI AATT 7 cut(s) 31, 202, 241, 377, 403, 612, 984
TatI WGTACW 1 cut(s) 668
TfiI GAWTC 3 cut(s) 97, 570, 1046
Tru1I TTAA 3 cut(s) 287, 302, 747
Tru9I TTAA 3 cut(s) 287, 302, 747
TscAI CASTG 2 cut(s) 567, 837
TseFI GTSAC 1 cut(s) 953
TseI GCWGC 1 cut(s) 540
Tsp45I GTSAC 1 cut(s) 953
TspDTI ATGAA 8 cut(s) 357, 359, 450, 459, 580, 622, 915, 996
TspGWI ACGGA 2 cut(s) 52, 1024
TspRI CASTG 2 cut(s) 567, 837
Van91I CCANNNNNTGG 3 cut(s) 419, 533, 1056
VneI GTGCAC 1 cut(s) 681
VpaK11BI GGWCC 2 cut(s) 638, 715
XapI RAATTY 3 cut(s) 202, 377, 612
XceI RCATGY 1 cut(s) 316
XcmI CCANNNNNNNNNTGG 2 cut(s) 530, 829
XmnI GAANNNNTTC 1 cut(s) 629
XspI CTAG 3 cut(s) 210, 719, 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.