Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000292

Physical Location & Seq

Genomic Coordinates Reverse (-)

40989234 .. 40994076

Gene Structure 4843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG295000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGTGAACAAAAGTTTACTTGAGCTTTTTTATGCAGTGATCTTTCATACAACGATTTCACCACTAAGTCAGCAGCTGTCAGTTGTGAACCACAAGGCGGCTTGCCCGGAAGAACGTCAGTTAAAGTTAGATTGGCCAACAAGGCACAATATCTGTGTCGGTATTGCAAGAGGTTTGGCCTCCCTCCATGAGGAGTCAAGGTTGAAGATCGTTCATCGAGACATCAAAGCTACTAATGTGCTACTTGATAAAAATCTTTTCCCCAAGATATCCGACTTCGGATTGGCCAAACTTGATGAAGAGGAGAATACCCACATAAGCACCCGAATTGCTGGAACTTATGGGAGGAGCAATACAACTTACCGGACAAAGGAAGAATGCTTTTATCTTCTTGATTGGGCACTTCTTCTAAAAGAGAAAGGGAATGTACTGGAACTAGTTGATCCAAGGATGGGCTCAGACTTTAACAAAGAAGAAATGATGATCACAATCAATGTGGCTCTTCTTTGCACTAATGTCATTGCAGCAGATAGGCCTACCATGTCTTCAGTGGTGAGCATGCTTGAAGGCAAGGCTTCTGTCCAAGAGTTGGTCTTGGATCCAAATGCGTCGAAGGATGAGATCAATGAAATGAGGAAACATTTTGAGTCCAATGTTGCAGAAAACACGAGTGAGAATAGTCAGAGGCAAACTATGTCAACCGAAGGGCCTTGGACTGCTTCATCTACATCAGTTAATGATCTTTATCCGGTCAATCCTGATTCAAATTACTGGGAGAACAGAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

262

Amino Acids

29.65

Weight (kDa)

5.45

Isoelectric Point (pI)

41.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	40 - 105	1.2e-11	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	46 - 112	2.5e-12	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53420 AT3G14840
fragaria_vesca	FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17851
malus_domestica	MD03G1246600.v1.1 MD06G1045200.v1.1 MD06G1045400.v1.1 MD11G1267800.v1.1 MD11G1267900.v1.1 MD11G1268100.v1.1 MD11G1268300.v1.1 MD11G1268500.v1.1 MD11G1268600.v1.1
prunus_persica	Prupe.4G157700_v2.0.a1 Prupe.4G157700_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1
pyrus_communis	pycom03g19540 pycom11g23600 pycom11g23630 pycom11g23690 pycom11g23720 pycom11g23730 pycom11g23740 pycom11g23750
rosa_chinensis	RchiOBHm_Chr0c40g0503411 RchiOBHm_Chr0c40g0503421 RchiOBHm_Chr5g0029631 RchiOBHm_Chr5g0029661 RchiOBHm_Chr5g0029701 RchiOBHm_Chr5g0029741 RchiOBHm_Chr5g0029771 RchiOBHm_Chr5g0029781 RchiOBHm_Chr5g0029811 RchiOBHm_Chr5g0029851 RchiOBHm_Chr5g0029871 RchiOBHm_Chr5g0029891 RchiOBHm_Chr7g0222221
rosa_laevigata	RLG00000017380 RLG00000032873 RLG00000033188 RLG00000033190 RLG00000033192 RLG00000033193 RLG00000033194 RLG00000033196 RLG00000033199 RLG00000033238
rosa_multiflora	Rmu_co8359987.1_g000001 Rmu_co8444909.1_g000001 Rmu_sc0001608.1_g000007 Rmu_sc0001608.1_g000009 Rmu_sc0001608.1_g000013 Rmu_sc0001608.1_g000018 Rmu_sc0001608.1_g000023 Rmu_sc0001608.1_g000040 Rmu_sc0003238.1_g000016 Rmu_sc0003368.1_g000026 Rmu_sc0003368.1_g000034 Rmu_sc0003368.1_g000043 Rmu_sc0003368.1_g000047 Rmu_sc0003368.1_g000052 Rmu_sc0003368.1_g000054 Rmu_sc0004963.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050080 Rroxscaffold_1G00050090 Rroxscaffold_1G00050110 Rroxscaffold_1G00050120 Rroxscaffold_1G00050180 Rroxscaffold_1G00050190 Rroxscaffold_1G00050220 Rroxscaffold_1G00050270 Rroxscaffold_1G00050300
rosa_rugosa	Rorug04G0065200 Rorug05G0114900 Rorug05G0115000 Rorug05G0115100 Rorug05G0120100 Rorug05G0238900
rosa_samantha	Rh5AG207800 Rh5AG208000 Rh5AG208300 Rh5AG208400 Rh5AG208800 Rh5AG294900 Rh5AG295000 Rh5AG295400 Rh5CG230400 Rh7AG347800
rosa_wichuraiana	Rw0G005370 Rw0G012460 Rw0G019060 Rw5G018910 Rw5G018920 Rw5G018930 Rw5G018940 Rw5G018960 Rw5G018970 Rw5G018980 Rw5G018990 Rw5G019000 Rw7G029840

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	589
AciI	CCGC	1 cut(s)	98
AclWI	GGATC	3 cut(s)	437, 593, 606
AcoI	YGGCCR	2 cut(s)	134, 285
AcuI	CTGAAG	1 cut(s)	531
AfaI	GTAC	1 cut(s)	429
AfiI	CCNNNNNNNGG	5 cut(s)	97, 190, 370, 452, 589
AgsI	TTSAA	3 cut(s)	205, 566, 765
AhlI	ACTAGT	1 cut(s)	436
AluBI	AGCT	3 cut(s)	25, 76, 230
AluI	AGCT	3 cut(s)	25, 76, 230
Alw26I	GTCTC	1 cut(s)	213
AlwI	GGATC	3 cut(s)	437, 593, 606
AlwNI	CAGNNNCTG	1 cut(s)	76
AoxI	GGCC	5 cut(s)	134, 177, 285, 533, 707
ApeKI	GCWGC	2 cut(s)	73, 524
AspS9I	GGNCC	1 cut(s)	707
AsuC2I	CCSGG	1 cut(s)	107
AsuHPI	GGTGA	3 cut(s)	16, 51, 565
BaeGI	GKGCMC	1 cut(s)	403
BalI	TGGCCA	2 cut(s)	136, 287
BamHI	GGATCC	1 cut(s)	598
BanII	GRGCYC	1 cut(s)	458
BauI	CACGAG	1 cut(s)	667
BbsI	GAAGAC	1 cut(s)	537
BbvI	GCAGC	2 cut(s)	85, 536
BccI	CCATC	1 cut(s)	445
BclI	TGATCA	1 cut(s)	483
BcnI	CCSGG	1 cut(s)	107
BcoDI	GTCTC	1 cut(s)	213
BcuI	ACTAGT	1 cut(s)	436
BfaI	CTAG	1 cut(s)	437
BglI	GCCNNNNNGGC	1 cut(s)	142
BisI	GCNGC	3 cut(s)	74, 99, 525
BlsI	GCNGC	3 cut(s)	75, 100, 526
Bme1390I	CCNGG	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	707
BmiI	GGNNCC	1 cut(s)	600
BmrFI	CCNGG	1 cut(s)	107
BmrI	ACTGGG	1 cut(s)	781
BmuI	ACTGGG	1 cut(s)	781
BpiI	GAAGAC	1 cut(s)	537
BpuEI	CTTGAG	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	107
BsaBI	GATNNNNATC	3 cut(s)	252, 488, 744
BsaJI	CCNNGG	2 cut(s)	446, 710
BsaWI	WCCGGW	2 cut(s)	363, 748
BsaXI	ACNNNNNCTCC	2 cut(s)	185, 215
Bsc4I	CCNNNNNNNGG	5 cut(s)	97, 190, 370, 452, 589
Bse1I	ACTGG	2 cut(s)	435, 776
Bse3DI	GCAATG	1 cut(s)	519
Bse8I	GATNNNNATC	3 cut(s)	252, 488, 744
BseDI	CCNNGG	2 cut(s)	446, 710
BseGI	GGATG	2 cut(s)	456, 622
BseJI	GATNNNNATC	3 cut(s)	252, 488, 744
BseLI	CCNNNNNNNGG	5 cut(s)	97, 190, 370, 452, 589
BseMI	GCAATG	1 cut(s)	519
BseMII	CTCAG	1 cut(s)	471
BseNI	ACTGG	2 cut(s)	435, 776
BseRI	GAGGAG	3 cut(s)	206, 317, 361
BseSI	GKGCMC	1 cut(s)	403
BseXI	GCAGC	2 cut(s)	85, 536
BshFI	GGCC	5 cut(s)	136, 179, 287, 535, 709
BsiSI	CCGG	3 cut(s)	107, 364, 749
BslI	CCNNNNNNNGG	5 cut(s)	97, 190, 370, 452, 589
BsmAI	GTCTC	1 cut(s)	213
BsmI	GAATGC	1 cut(s)	383
BsnI	GGCC	5 cut(s)	136, 179, 287, 535, 709
Bsp1286I	GDGCHC	2 cut(s)	403, 458
Bsp143I	GATC	7 cut(s)	39, 207, 442, 483, 598, 621, 739
BspACI	CCGC	1 cut(s)	98
BspANI	GGCC	5 cut(s)	136, 179, 287, 535, 709
BspCNI	CTCAG	1 cut(s)	470
BspLI	GGNNCC	1 cut(s)	600
BspPI	GGATC	3 cut(s)	437, 593, 606
BspQI	GCTCTTC	1 cut(s)	507
BsrDI	GCAATG	1 cut(s)	519
BsrI	ACTGG	2 cut(s)	435, 776
BssECI	CCNNGG	2 cut(s)	446, 710
BssMI	GATC	7 cut(s)	39, 207, 442, 483, 598, 621, 739
BssSI	CACGAG	1 cut(s)	667
BssT1I	CCWWGG	2 cut(s)	446, 710
Bst2BI	CACGAG	1 cut(s)	667
Bst6I	CTCTTC	2 cut(s)	294, 507
BstC8I	GCNNGC	2 cut(s)	103, 560
BstDEI	CTNAG	2 cut(s)	65, 457
BstENI	CCTNNNNNAGG	1 cut(s)	188
BstF5I	GGATG	2 cut(s)	456, 622
BstKTI	GATC	7 cut(s)	42, 210, 445, 486, 601, 624, 742
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	7 cut(s)	39, 207, 442, 483, 598, 621, 739
BstMWI	GCNNNNNNNGC	1 cut(s)	142
BstNSI	RCATGY	1 cut(s)	562
BstSCI	CCNGG	1 cut(s)	105
BstSLI	GKGCMC	1 cut(s)	403
BstV1I	GCAGC	2 cut(s)	85, 536
BstV2I	GAAGAC	1 cut(s)	537
BstX2I	RGATCY	1 cut(s)	598
BstYI	RGATCY	1 cut(s)	598
BsuRI	GGCC	5 cut(s)	136, 179, 287, 535, 709
BtsCI	GGATG	2 cut(s)	456, 622
BtsI	GCAGTG	1 cut(s)	42
BtsIMutI	CAGTG	2 cut(s)	42, 555
Cac8I	GCNNGC	2 cut(s)	103, 560
CaiI	CAGNNNCTG	1 cut(s)	76
Cfr13I	GGNCC	1 cut(s)	707
CseI	GACGC	1 cut(s)	597
Csp6I	GTAC	1 cut(s)	428
CspCI	CAANNNNNGTGG	2 cut(s)	477, 512
CviAII	CATG	3 cut(s)	188, 541, 559
CviQI	GTAC	1 cut(s)	428
DdeI	CTNAG	2 cut(s)	65, 457
DpnI	GATC	7 cut(s)	41, 209, 444, 485, 600, 623, 741
DpnII	GATC	7 cut(s)	39, 207, 442, 483, 598, 621, 739
EaeI	YGGCCR	2 cut(s)	134, 285
Eam1104I	CTCTTC	2 cut(s)	294, 507
EarI	CTCTTC	2 cut(s)	294, 507
Eco130I	CCWWGG	2 cut(s)	446, 710
Eco147I	AGGCCT	1 cut(s)	535
Eco24I	GRGCYC	1 cut(s)	458
Eco32I	GATATC	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	531
EcoNI	CCTNNNNNAGG	1 cut(s)	188
EcoO109I	RGGNCCY	1 cut(s)	707
EcoRV	GATATC	1 cut(s)	270
EcoT14I	CCWWGG	2 cut(s)	446, 710
EcoT38I	GRGCYC	1 cut(s)	458
ErhI	CCWWGG	2 cut(s)	446, 710
FaeI	CATG	3 cut(s)	191, 544, 562
FaiI	YATR	8 cut(s)	33, 48, 189, 317, 342, 542, 560, 695
FatI	CATG	3 cut(s)	187, 540, 558
FbaI	TGATCA	1 cut(s)	483
Fnu4HI	GCNGC	3 cut(s)	74, 99, 525
FokI	GGATG	2 cut(s)	463, 629
FriOI	GRGCYC	1 cut(s)	458
Fsp4HI	GCNGC	3 cut(s)	74, 99, 525
FspBI	CTAG	1 cut(s)	437
GluI	GCNGC	3 cut(s)	74, 99, 525
HaeIII	GGCC	5 cut(s)	136, 179, 287, 535, 709
HapII	CCGG	3 cut(s)	107, 364, 749
HgaI	GACGC	1 cut(s)	597
Hin1II	CATG	3 cut(s)	191, 544, 562
HincII	GTYRAC	1 cut(s)	699
HindII	GTYRAC	1 cut(s)	699
HinfI	GANTC	3 cut(s)	194, 647, 761
HpaII	CCGG	3 cut(s)	107, 364, 749
HphI	GGTGA	3 cut(s)	16, 51, 565
Hpy166II	GTNNAC	4 cut(s)	7, 17, 88, 699
Hpy188I	TCNGA	4 cut(s)	274, 281, 460, 684
Hpy188III	TCNNGA	3 cut(s)	218, 392, 758
Hpy8I	GTNNAC	4 cut(s)	7, 17, 88, 699
Hpy99I	CGWCG	1 cut(s)	613
HpyAV	CCTTC	3 cut(s)	560, 607, 698
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	5 cut(s)	35, 167, 510, 524, 659
HpyF10VI	GCNNNNNNNGC	1 cut(s)	142
HpyF3I	CTNAG	2 cut(s)	65, 457
HpySE526I	ACGT	1 cut(s)	115
Hsp92II	CATG	3 cut(s)	191, 544, 562
Ksp22I	TGATCA	1 cut(s)	483
Kzo9I	GATC	7 cut(s)	39, 207, 442, 483, 598, 621, 739
LguI	GCTCTTC	1 cut(s)	507
LmnI	GCTCC	1 cut(s)	348
LpnPI	CCDG	7 cut(s)	120, 318, 377, 416, 757, 762, 771
Lsp1109I	GCAGC	2 cut(s)	85, 536
MaeI	CTAG	1 cut(s)	437
MaeII	ACGT	1 cut(s)	115
MalI	GATC	7 cut(s)	41, 209, 444, 485, 600, 623, 741
MboI	GATC	7 cut(s)	39, 207, 442, 483, 598, 621, 739
MboII	GAAGA	9 cut(s)	122, 217, 311, 380, 386, 398, 485, 494, 537
MflI	RGATCY	1 cut(s)	598
MhlI	GDGCHC	2 cut(s)	403, 458
MlsI	TGGCCA	2 cut(s)	136, 287
MluCI	AATT	3 cut(s)	327, 766, 784
MluNI	TGGCCA	2 cut(s)	136, 287
MlyI	GAGTC	2 cut(s)	203, 656
MmeI	TCCRAC	1 cut(s)	297
MnlI	CCTC	8 cut(s)	164, 184, 190, 194, 295, 339, 627, 678
Mox20I	TGGCCA	2 cut(s)	136, 287
MscI	TGGCCA	2 cut(s)	136, 287
MseI	TTAA	3 cut(s)	122, 465, 735
Msp20I	TGGCCA	2 cut(s)	136, 287
MspA1I	CMGCKG	1 cut(s)	76
MspI	CCGG	3 cut(s)	107, 364, 749
MspR9I	CCNGG	1 cut(s)	107
Mva1269I	GAATGC	1 cut(s)	383
MwoI	GCNNNNNNNGC	1 cut(s)	142
NciI	CCSGG	1 cut(s)	107
NdeII	GATC	7 cut(s)	39, 207, 442, 483, 598, 621, 739
NlaIII	CATG	3 cut(s)	191, 544, 562
NlaIV	GGNNCC	1 cut(s)	600
NspI	RCATGY	1 cut(s)	562
PaeI	GCATGC	1 cut(s)	562
PceI	AGGCCT	1 cut(s)	535
PciSI	GCTCTTC	1 cut(s)	507
PctI	GAATGC	1 cut(s)	383
PfeI	GAWTC	1 cut(s)	761
PflMI	CCANNNNNTGG	1 cut(s)	589
PkrI	GCNGC	3 cut(s)	75, 100, 526
PleI	GAGTC	2 cut(s)	202, 655
PpsI	GAGTC	2 cut(s)	202, 655
PspN4I	GGNNCC	1 cut(s)	600
PspPI	GGNCC	1 cut(s)	707
PstNI	CAGNNNCTG	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	598
PvuII	CAGCTG	1 cut(s)	76
RsaI	GTAC	1 cut(s)	429
RsaNI	GTAC	1 cut(s)	428
SapI	GCTCTTC	1 cut(s)	507
SaqAI	TTAA	3 cut(s)	122, 465, 735
SatI	GCNGC	3 cut(s)	74, 99, 525
Sau3AI	GATC	7 cut(s)	39, 207, 442, 483, 598, 621, 739
Sau96I	GGNCC	1 cut(s)	707
SchI	GAGTC	2 cut(s)	203, 656
ScrFI	CCNGG	1 cut(s)	107
SduI	GDGCHC	2 cut(s)	403, 458
SetI	ASST	6 cut(s)	27, 78, 118, 175, 203, 232
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
SpeI	ACTAGT	1 cut(s)	436
SphI	GCATGC	1 cut(s)	562
Sse9I	AATT	3 cut(s)	327, 766, 784
SseBI	AGGCCT	1 cut(s)	535
SsiI	CCGC	1 cut(s)	98
SspMI	CTAG	1 cut(s)	437
StuI	AGGCCT	1 cut(s)	535
StyD4I	CCNGG	1 cut(s)	105
StyI	CCWWGG	2 cut(s)	446, 710
TaiI	ACGT	1 cut(s)	118
TaqI	TCGA	2 cut(s)	217, 611
TasI	AATT	3 cut(s)	327, 766, 784
TatI	WGTACW	1 cut(s)	427
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	1 cut(s)	761
Tru1I	TTAA	3 cut(s)	122, 465, 735
Tru9I	TTAA	3 cut(s)	122, 465, 735
TscAI	CASTG	2 cut(s)	42, 555
TseI	GCWGC	2 cut(s)	73, 524
TspDTI	ATGAA	5 cut(s)	35, 203, 312, 642, 711
TspRI	CASTG	2 cut(s)	42, 555
Van91I	CCANNNNNTGG	1 cut(s)	589
XagI	CCTNNNNNAGG	1 cut(s)	188
XceI	RCATGY	1 cut(s)	562
XcmI	CCANNNNNNNNNTGG	1 cut(s)	547
XspI	CTAG	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.