Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000292

Physical Location & Seq

Genomic Coordinates Reverse (-)

23648751 .. 23656579

Gene Structure 7829 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30921

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2676 bp

ATGCTGGATTCTCTTTGTTGCTATTTTCGTATGGGTTTGGCGGTAAATCATGAACTTTTGAAATCTCAGAATTTGCCGGGAAAACTCCCGCCAGAGTTGATCAGGCTCCCCTATCTCCAGGAAATTGATCTCTCCCGCAACTACCTGAATGGCACCATCCCTCCAGAATGGGGTGCCCTGCCACTACTTAACATTTCCCTTGTAGGAAACCGTTTGACAGGTTCTCTACCTGTTGAGCTTGCAAACATCACCACCCTGAAAAGTTTGGCCATCGATTTCAATAGCTTCTCTGGAGTTCTTCCTGTTCAGCTTGGGAACTTGCCCAACATAGAAAGAATGCTTCTTACCTCAAACAACTTTACTGGGGACTTGCCGGAAACATTTGCAGGGCTTACTACGCTAAAAGACTTTCGGATTAATGACAATTCCTTTTCTGGAAAGATACCTAATTTTATTCAGAATTGGACAAATCTTGAAAAACTTGCGATTCAGGCTAGTGGCTTGACCGGGCCCATTCCTTACGGCATTTCTCTTTTGACAAAATTAACTGACATGATGTTGCGGAATTGCAATATTAGTGGACAGCTACCTGCATATCTTGGGGGAATGACAACTTTGAAAACTTTAGACCTCAGCTTTAACAAGCTAACCGGAGAAATTCCAAGCAGCTTTTCTGGTCTAGCAAAAATTGATTACATGTTCTTGACTGGAAATATGCTCACTGGATCTGTGCCAGATTGGATGAATAGAGGAGGCAACATATCTGTTTCATGTCTGAAAATTGCAAAATGTCCAAAACCTTCGTTCTCTCTCCACATAAATTGTGGCGGAAAAGAAGTAACTCTCAGTGAAAATTTCACATGGCCTATAATGGCAACATATGAGGATGATACAGATAACTCTGGGCCTTCAAAATTTTACCAAAGCAGAACAAATTGGGCGTCAAGCAACACTGGTTACTTTCCTGATGATGATCGTACTACAGATACCTTTATCTGGCCTAATTCATCTAGACTCTCTATAACCAATAATCCTCAGCTGTATTTGAATGCACGCCTTTCTCCTATTTCTCTAACTTATTATGGGTTTTGCCTGGGAAATGGAATCTACACAGTAAACCTCCATTTTGCCGAGATAATGTTTACAAATGATAAAACATATAGCAGCTTGGGAAGGCGTATATTTGATATTTATATCCAGGGGTTACTAGTGCTGAAGGATTTTAACATTGCGAATGACGCAGGAGGGTTTGGTATAGCAGTCGTAAAAAACTTCACTGCTAATGTAACTAGTAATACCTTGGAGATCCGTTTATTTTGGGCTGGGAAAGGGACAACAGGCATCCCTGACAGAGGACACTATGGTCCTCTGATATCAGCTATTTCTGTAGATCCCAACTTTAAACCCCCGAAAGAGGCCTTGACAGGAGGTGGAGGTGGAGGTGGAAGTGGAATACCTATAGGTGTAGTAGTTGGAATTGTGGTTGGGGGAATCTTCATTATACTACTTATTTTTGGTATTCTTTGGTGGAAAGGCTTTCTAAGACGAGAAAGGACTCTTGAACAAGATTTAAATGGTGTGGACTTGCAAACCAGTAAATTTACCTTGAGGCAAATCAAAGCTGCGACAAATGACTTTGACCCAGCTAATAAGATTGGAGAAGGTGGTTTTGGTCCTGTTCACAAGGGCCTTCTATCAGATGGCACCATAATTGCTGTTAAGCAGCTTTCTGCCAAATCAAAGCAAGGGAATCGTGAATTTGTGAATGAGATTGGCATGATTTCTGCTTTGCAACACCCTCATCTTGTCAAGCTCTATGGATGCTGCATTGAAGGAAATCAATTGTTTCTTATTTACGAGTACATGGAAAATAATAGCCTTGCACGGGCCTTGTTTGGCCCGGAAGTAAGTCAGTTGAAGTTAGATTGGCCAACAAGGCACAATATCTGTGTTGGTATTGCAAGAGGTTTGGCCTTCCTCCATGAGGAGTCAAGGTTGAAGATCGTTCATCGAGACATCAAAGCTACTAATGTGCTACTTGATAAAAATCTTTTCCCGAAGATATCTGACTTTGGCCTAGCCAAGCTTGATGAAGATGATAATACCCACATAAGCACCCGGATTGCTGGAACTTATGGATATATGGCACCTGAATATGCGATGCGTGGCTATCTAACTGATAAAGCCGATGTTTATAGTTTTGGAATTGTTGTACTGGAAATTGTTAGTGGGAGGAGCAATACAACTTACCGGACAAAGGAAGAATGCTTTTATCTTCTTGATTGGGCACTTCATCTAAAAGAGAAAGGGAACATCCTGGAACTAGTTGATCCAAGGTTGGGTTCAGACTTTAACAAAGAAGAAATGATGATCACAATCAATGTGGCTCTTCTTTGCACTAATGTCATTGCAGCAGATAGGCCTACGATGTCTTCAGTGGTGAGCATGCTTGAAGGCAAGGCTTCTGTTCAAGAGTTGGTCATGGATCCTAATGCGTCGAAGGATGAGATCAATGAAATGAGGAAACATTTTCAGTCCATTGTTGCAGAAAACACGAGTGAGAATAGTCAGAGGCAAACTATGTCAACCGAAGGGCCTTGGACTGCTTCATCTACATCAGCTAATGATCTTTATCCAGTCCATCCTGATTCAAATTACTTGGAGAACAGAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

891

Amino Acids

98.37

Weight (kDa)

5.95

Isoelectric Point (pI)

30.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	100 - 261	4.3e-07	Leucine-rich repeat region
LRR_8	PF13855	181 - 240	2e-08	Leucine rich repeat
Malectin	PF11721	270 - 461	2.6e-38	Malectin domain
Pkinase	PF00069	549 - 749	5.9e-44	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	550 - 756	2.1e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53420 AT3G14840
fragaria_vesca	FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17851
malus_domestica	MD03G1246600.v1.1 MD06G1045200.v1.1 MD06G1045400.v1.1 MD11G1267800.v1.1 MD11G1267900.v1.1 MD11G1268100.v1.1 MD11G1268300.v1.1 MD11G1268500.v1.1 MD11G1268600.v1.1
prunus_persica	Prupe.4G157700_v2.0.a1 Prupe.4G157700_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1
pyrus_communis	pycom03g19540 pycom11g23600 pycom11g23630 pycom11g23690 pycom11g23720 pycom11g23730 pycom11g23740 pycom11g23750
rosa_chinensis	RchiOBHm_Chr0c40g0503411 RchiOBHm_Chr0c40g0503421 RchiOBHm_Chr5g0029631 RchiOBHm_Chr5g0029661 RchiOBHm_Chr5g0029701 RchiOBHm_Chr5g0029741 RchiOBHm_Chr5g0029771 RchiOBHm_Chr5g0029781 RchiOBHm_Chr5g0029811 RchiOBHm_Chr5g0029851 RchiOBHm_Chr5g0029871 RchiOBHm_Chr5g0029891 RchiOBHm_Chr7g0222221
rosa_laevigata	RLG00000017380 RLG00000032873 RLG00000033188 RLG00000033190 RLG00000033192 RLG00000033193 RLG00000033194 RLG00000033196 RLG00000033199 RLG00000033238
rosa_multiflora	Rmu_co8359987.1_g000001 Rmu_co8444909.1_g000001 Rmu_sc0001608.1_g000007 Rmu_sc0001608.1_g000009 Rmu_sc0001608.1_g000013 Rmu_sc0001608.1_g000018 Rmu_sc0001608.1_g000023 Rmu_sc0001608.1_g000040 Rmu_sc0003238.1_g000016 Rmu_sc0003368.1_g000026 Rmu_sc0003368.1_g000034 Rmu_sc0003368.1_g000043 Rmu_sc0003368.1_g000047 Rmu_sc0003368.1_g000052 Rmu_sc0003368.1_g000054 Rmu_sc0004963.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050080 Rroxscaffold_1G00050090 Rroxscaffold_1G00050110 Rroxscaffold_1G00050120 Rroxscaffold_1G00050180 Rroxscaffold_1G00050190 Rroxscaffold_1G00050220 Rroxscaffold_1G00050270 Rroxscaffold_1G00050300
rosa_rugosa	Rorug04G0065200 Rorug05G0114900 Rorug05G0115000 Rorug05G0115100 Rorug05G0120100 Rorug05G0238900
rosa_samantha	Rh5AG207800 Rh5AG208000 Rh5AG208300 Rh5AG208400 Rh5AG208800 Rh5AG294900 Rh5AG295000 Rh5AG295400 Rh5CG230400 Rh7AG347800
rosa_wichuraiana	Rw0G005370 Rw0G012460 Rw0G019060 Rw5G018910 Rw5G018920 Rw5G018930 Rw5G018940 Rw5G018960 Rw5G018970 Rw5G018980 Rw5G018990 Rw5G019000 Rw7G029840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1362
Acc36I	ACCTGC	1 cut(s)	598
AccB1I	GGYRCC	4 cut(s)	152, 173, 1703, 2146
AciI	CCGC	5 cut(s)	41, 89, 136, 562, 828
AclWI	GGATC	6 cut(s)	733, 1300, 1385, 2324, 2480, 2493
AcoI	YGGCCR	2 cut(s)	267, 1928
AcsI	RAATTY	6 cut(s)	70, 657, 853, 914, 1598, 1757
AcuI	CTGAAG	2 cut(s)	1235, 2418
AcyI	GRCGYC	1 cut(s)	941
AfaI	GTAC	3 cut(s)	979, 1862, 2214
AfiI	CCNNNNNNNGG	8 cut(s)	170, 996, 1352, 1414, 1885, 1984, 2257, 2339
AflIII	ACRYGT	1 cut(s)	696
AhlI	ACTAGT	3 cut(s)	1207, 1289, 2323
AjnI	CCWGG	4 cut(s)	117, 1092, 1197, 2316
AjuI	GAANNNNNNNTTGG	6 cut(s)	655, 687, 1653, 1685, 2326, 2358
Alw26I	GTCTC	1 cut(s)	2007
AlwI	GGATC	6 cut(s)	733, 1300, 1385, 2324, 2480, 2493
ApaI	GGGCCC	1 cut(s)	513
ApeKI	GCWGC	6 cut(s)	666, 1164, 1622, 1723, 1824, 2411
ApoI	RAATTY	6 cut(s)	70, 657, 853, 914, 1598, 1757
ArsI	GACNNNNNNTTYG	2 cut(s)	926, 958
AseI	ATTAAT	1 cut(s)	417
AspS9I	GGNCC	9 cut(s)	509, 510, 905, 1364, 1673, 1687, 1887, 1898, 2594
AsuC2I	CCSGG	4 cut(s)	78, 508, 1901, 2119
AsuHPI	GGTGA	2 cut(s)	241, 2452
AvaII	GGWCC	2 cut(s)	1364, 1673
BaeGI	GKGCMC	3 cut(s)	178, 513, 2290
BalI	TGGCCA	2 cut(s)	269, 1930
BamHI	GGATCC	1 cut(s)	2485
BanI	GGYRCC	4 cut(s)	152, 173, 1703, 2146
BanII	GRGCYC	1 cut(s)	513
BauI	CACGAG	1 cut(s)	2554
BbsI	GAAGAC	1 cut(s)	2424
BbvCI	CCTCAGC	2 cut(s)	632, 1035
BbvI	GCAGC	6 cut(s)	678, 1176, 1609, 1735, 1811, 2423
BccI	CCATC	4 cut(s)	164, 278, 1694, 2649
BceAI	ACGGC	1 cut(s)	538
BcgI	CGANNNNNNTGC	2 cut(s)	1733, 1767
BciT130I	CCWGG	4 cut(s)	119, 1094, 1199, 2318
BclI	TGATCA	2 cut(s)	99, 2370
BcnI	CCSGG	4 cut(s)	78, 508, 1901, 2119
BcoDI	GTCTC	1 cut(s)	2007
BcuI	ACTAGT	3 cut(s)	1207, 1289, 2323
BfaI	CTAG	7 cut(s)	495, 680, 1011, 1208, 1290, 2078, 2324
BfmI	CTRYAG	3 cut(s)	981, 1386, 1458
BfuAI	ACCTGC	1 cut(s)	598
BglI	GCCNNNNNGGC	1 cut(s)	1936
BisI	GCNGC	6 cut(s)	667, 1165, 1623, 1724, 1825, 2412
BlsI	GCNGC	6 cut(s)	668, 1166, 1624, 1725, 1826, 2413
Bme1390I	CCNGG	8 cut(s)	78, 119, 508, 1094, 1199, 1901, 2119, 2318
Bme18I	GGWCC	2 cut(s)	1364, 1673
BmgT120I	GGNCC	9 cut(s)	509, 510, 905, 1364, 1673, 1687, 1887, 1898, 2594
BmiI	GGNNCC	7 cut(s)	107, 154, 175, 511, 1705, 2148, 2487
BmrFI	CCNGG	8 cut(s)	78, 119, 508, 1094, 1199, 1901, 2119, 2318
BmrI	ACTGGG	1 cut(s)	372
BmsI	GCATC	3 cut(s)	1350, 1811, 2151
BmuI	ACTGGG	1 cut(s)	372
BpiI	GAAGAC	1 cut(s)	2424
BpmI	CTGGAG	3 cut(s)	101, 147, 312
Bpu10I	CCTNAGC	2 cut(s)	632, 1035
BpuEI	CTTGAG	1 cut(s)	1627
BpuMI	CCSGG	4 cut(s)	78, 508, 1901, 2119
Bsa29I	ATCGAT	1 cut(s)	273
BsaBI	GATNNNNATC	4 cut(s)	972, 2046, 2375, 2631
BsaHI	GRCGYC	1 cut(s)	941
BsaJI	CCNNGG	5 cut(s)	1093, 1198, 1299, 2333, 2597
BsaWI	WCCGGW	2 cut(s)	650, 2250
BsaXI	ACNNNNNCTCC	4 cut(s)	145, 175, 1979, 2009
Bsc4I	CCNNNNNNNGG	8 cut(s)	170, 996, 1352, 1414, 1885, 1984, 2257, 2339
Bse1I	ACTGG	7 cut(s)	367, 712, 727, 958, 1593, 2220, 2636
Bse3DI	GCAATG	2 cut(s)	1227, 2406
Bse8I	GATNNNNATC	4 cut(s)	972, 2046, 2375, 2631
BseBI	CCWGG	4 cut(s)	119, 1094, 1199, 2318
BseCI	ATCGAT	1 cut(s)	273
BseDI	CCNNGG	5 cut(s)	1093, 1198, 1299, 2333, 2597
BseGI	GGATG	8 cut(s)	156, 747, 892, 1341, 1826, 2313, 2509, 2641
BseJI	GATNNNNATC	4 cut(s)	972, 2046, 2375, 2631
BseLI	CCNNNNNNNGG	8 cut(s)	170, 996, 1352, 1414, 1885, 1984, 2257, 2339
BseMI	GCAATG	2 cut(s)	1227, 2406
BseMII	CTCAG	4 cut(s)	80, 646, 859, 1049
BseNI	ACTGG	7 cut(s)	367, 712, 727, 958, 1593, 2220, 2636
BseRI	GAGGAG	3 cut(s)	765, 2000, 2248
BseSI	GKGCMC	3 cut(s)	178, 513, 2290
BseXI	GCAGC	6 cut(s)	678, 1176, 1609, 1735, 1811, 2423
BseYI	CCCAGC	2 cut(s)	1322, 1642
BshNI	GGYRCC	4 cut(s)	152, 173, 1703, 2146
BshVI	ATCGAT	1 cut(s)	273
BsiSI	CCGG	7 cut(s)	77, 374, 507, 651, 1901, 2119, 2251
BslFI	GGGAC	2 cut(s)	380, 1345
BslI	CCNNNNNNNGG	8 cut(s)	170, 996, 1352, 1414, 1885, 1984, 2257, 2339
BsmAI	GTCTC	1 cut(s)	2007
BsmFI	GGGAC	2 cut(s)	380, 1345
BsmI	GAATGC	3 cut(s)	342, 1054, 2270
Bsp120I	GGGCCC	1 cut(s)	509
Bsp1286I	GDGCHC	3 cut(s)	178, 513, 2290
BspACI	CCGC	5 cut(s)	41, 89, 136, 562, 828
BspCNI	CTCAG	4 cut(s)	79, 645, 858, 1048
BspDI	ATCGAT	1 cut(s)	273
BspHI	TCATGA	1 cut(s)	49
BspLI	GGNNCC	7 cut(s)	107, 154, 175, 511, 1705, 2148, 2487
BspMI	ACCTGC	1 cut(s)	598
BspPI	GGATC	6 cut(s)	733, 1300, 1385, 2324, 2480, 2493
BspQI	GCTCTTC	1 cut(s)	2394
BspT107I	GGYRCC	4 cut(s)	152, 173, 1703, 2146
BsrDI	GCAATG	2 cut(s)	1227, 2406
BsrI	ACTGG	7 cut(s)	367, 712, 727, 958, 1593, 2220, 2636
BssECI	CCNNGG	5 cut(s)	1093, 1198, 1299, 2333, 2597
BssNI	GRCGYC	1 cut(s)	941
BssSI	CACGAG	1 cut(s)	2554
BssT1I	CCWWGG	3 cut(s)	1299, 2333, 2597
Bst2BI	CACGAG	1 cut(s)	2554
Bst2UI	CCWGG	4 cut(s)	119, 1094, 1199, 2318
Bst4CI	ACNGT	2 cut(s)	212, 1114
Bst6I	CTCTTC	1 cut(s)	2394
BstACI	GRCGYC	1 cut(s)	941
BstC8I	GCNNGC	3 cut(s)	240, 1054, 2447
BstDEI	CTNAG	5 cut(s)	66, 632, 845, 1035, 1541
BstENI	CCTNNNNNAGG	2 cut(s)	1350, 1982
BstF5I	GGATG	8 cut(s)	156, 747, 892, 1341, 1826, 2313, 2509, 2641
BstMAI	GTCTC	1 cut(s)	2007
BstMWI	GCNNNNNNNGC	4 cut(s)	397, 491, 1238, 1936
BstNI	CCWGG	4 cut(s)	119, 1094, 1199, 2318
BstNSI	RCATGY	2 cut(s)	700, 2449
BstSCI	CCNGG	8 cut(s)	76, 117, 506, 1092, 1197, 1899, 2117, 2316
BstSFI	CTRYAG	3 cut(s)	981, 1386, 1458
BstSLI	GKGCMC	3 cut(s)	178, 513, 2290
BstV1I	GCAGC	6 cut(s)	678, 1176, 1609, 1735, 1811, 2423
BstV2I	GAAGAC	1 cut(s)	2424
BstX2I	RGATCY	4 cut(s)	725, 1305, 1390, 2485
BstYI	RGATCY	4 cut(s)	725, 1305, 1390, 2485
Bsu15I	ATCGAT	1 cut(s)	273
BsuTUI	ATCGAT	1 cut(s)	273
BtgZI	GCGATG	1 cut(s)	2174
BtsCI	GGATG	8 cut(s)	156, 747, 892, 1341, 1826, 2313, 2509, 2641
BtsI	GCAGTG	1 cut(s)	1275
BtsIMutI	CAGTG	5 cut(s)	720, 853, 951, 1275, 2442
BveI	ACCTGC	1 cut(s)	598
Cac8I	GCNNGC	3 cut(s)	240, 1054, 2447
CciI	TCATGA	1 cut(s)	49
Cfr13I	GGNCC	9 cut(s)	509, 510, 905, 1364, 1673, 1687, 1887, 1898, 2594
ClaI	ATCGAT	1 cut(s)	273
CseI	GACGC	3 cut(s)	930, 1247, 2484
Csp6I	GTAC	3 cut(s)	978, 1861, 2213
CspCI	CAANNNNNGTGG	6 cut(s)	559, 594, 803, 838, 2364, 2399
CviQI	GTAC	3 cut(s)	978, 1861, 2213
DdeI	CTNAG	5 cut(s)	66, 632, 845, 1035, 1541
DraI	TTTAAA	2 cut(s)	1402, 1572
DrdI	GACNNNNNNGTC	1 cut(s)	1362
DseDI	GACNNNNNNGTC	1 cut(s)	1362
EaeI	YGGCCR	2 cut(s)	267, 1928
Eam1104I	CTCTTC	1 cut(s)	2394
EarI	CTCTTC	1 cut(s)	2394
EciI	GGCGGA	1 cut(s)	843
Eco130I	CCWWGG	3 cut(s)	1299, 2333, 2597
Eco147I	AGGCCT	2 cut(s)	1418, 2422
Eco24I	GRGCYC	1 cut(s)	513
Eco32I	GATATC	2 cut(s)	1374, 2064
Eco47I	GGWCC	2 cut(s)	1364, 1673
Eco57I	CTGAAG	2 cut(s)	1235, 2418
EcoNI	CCTNNNNNAGG	2 cut(s)	1350, 1982
EcoO109I	RGGNCCY	2 cut(s)	1687, 2594
EcoRII	CCWGG	4 cut(s)	117, 1092, 1197, 2316
EcoRV	GATATC	2 cut(s)	1374, 2064
EcoT14I	CCWWGG	3 cut(s)	1299, 2333, 2597
EcoT38I	GRGCYC	1 cut(s)	513
ErhI	CCWWGG	3 cut(s)	1299, 2333, 2597
FaqI	GGGAC	2 cut(s)	380, 1345
FauI	CCCGC	2 cut(s)	96, 143
FauNDI	CATATG	1 cut(s)	880
FbaI	TGATCA	2 cut(s)	99, 2370
Fnu4HI	GCNGC	6 cut(s)	667, 1165, 1623, 1724, 1825, 2412
FokI	GGATG	8 cut(s)	143, 754, 899, 1328, 1833, 2300, 2516, 2628
FriOI	GRGCYC	1 cut(s)	513
Fsp4HI	GCNGC	6 cut(s)	667, 1165, 1623, 1724, 1825, 2412
FspBI	CTAG	7 cut(s)	495, 680, 1011, 1208, 1290, 2078, 2324
GluI	GCNGC	6 cut(s)	667, 1165, 1623, 1724, 1825, 2412
GsaI	CCCAGC	2 cut(s)	1326, 1646
GsuI	CTGGAG	3 cut(s)	101, 147, 312
HapII	CCGG	7 cut(s)	77, 374, 507, 651, 1901, 2119, 2251
HgaI	GACGC	3 cut(s)	930, 1247, 2484
Hin1I	GRCGYC	1 cut(s)	941
HincII	GTYRAC	1 cut(s)	2586
HindII	GTYRAC	1 cut(s)	2586
HindIII	AAGCTT	1 cut(s)	2084
HinfI	GANTC	9 cut(s)	8, 487, 1014, 1104, 1491, 1555, 1750, 1988, 2648
HpaII	CCGG	7 cut(s)	77, 374, 507, 651, 1901, 2119, 2251
HphI	GGTGA	2 cut(s)	241, 2452
Hpy166II	GTNNAC	6 cut(s)	581, 1117, 1143, 1582, 1681, 2586
Hpy188I	TCNGA	9 cut(s)	69, 414, 459, 777, 1371, 1699, 2068, 2347, 2571
Hpy8I	GTNNAC	6 cut(s)	581, 1117, 1143, 1582, 1681, 2586
Hpy99I	CGWCG	1 cut(s)	2500
HpyCH4III	ACNGT	2 cut(s)	212, 1114
HpyF10VI	GCNNNNNNNGC	4 cut(s)	397, 491, 1238, 1936
HpyF3I	CTNAG	5 cut(s)	66, 632, 845, 1035, 1541
Hsp92I	GRCGYC	1 cut(s)	941
Ksp22I	TGATCA	2 cut(s)	99, 2370
LguI	GCTCTTC	1 cut(s)	2394
LmnI	GCTCC	2 cut(s)	111, 2235
Lsp1109I	GCAGC	6 cut(s)	678, 1176, 1609, 1735, 1811, 2423
LweI	GCATC	3 cut(s)	1350, 1811, 2151
MaeI	CTAG	7 cut(s)	495, 680, 1011, 1208, 1290, 2078, 2324
MaeIII	GTNAC	4 cut(s)	838, 956, 1203, 1285
MfeI	CAATTG	1 cut(s)	1841
MflI	RGATCY	4 cut(s)	725, 1305, 1390, 2485
MhlI	GDGCHC	3 cut(s)	178, 513, 2290
MlsI	TGGCCA	2 cut(s)	269, 1930
MluNI	TGGCCA	2 cut(s)	269, 1930
MlyI	GAGTC	3 cut(s)	1008, 1549, 1997
MmeI	TCCRAC	1 cut(s)	1453
Mox20I	TGGCCA	2 cut(s)	269, 1930
MscI	TGGCCA	2 cut(s)	269, 1930
MseI	TTAA	9 cut(s)	189, 417, 545, 639, 1224, 1401, 1571, 1719, 2352
Msp20I	TGGCCA	2 cut(s)	269, 1930
MspA1I	CMGCKG	1 cut(s)	1039
MspI	CCGG	7 cut(s)	77, 374, 507, 651, 1901, 2119, 2251
MspR9I	CCNGG	8 cut(s)	78, 119, 508, 1094, 1199, 1901, 2119, 2318
MunI	CAATTG	1 cut(s)	1841
Mva1269I	GAATGC	3 cut(s)	342, 1054, 2270
MvaI	CCWGG	4 cut(s)	119, 1094, 1199, 2318
MwoI	GCNNNNNNNGC	4 cut(s)	397, 491, 1238, 1936
NciI	CCSGG	4 cut(s)	78, 508, 1901, 2119
NdeI	CATATG	1 cut(s)	880
NlaIV	GGNNCC	7 cut(s)	107, 154, 175, 511, 1705, 2148, 2487
NmeAIII	GCCGAG	1 cut(s)	1156
NspI	RCATGY	2 cut(s)	700, 2449
PaeI	GCATGC	1 cut(s)	2449
PagI	TCATGA	1 cut(s)	49
PceI	AGGCCT	2 cut(s)	1418, 2422
PciI	ACATGT	1 cut(s)	696
PciSI	GCTCTTC	1 cut(s)	2394
PctI	GAATGC	3 cut(s)	342, 1054, 2270
PfeI	GAWTC	6 cut(s)	8, 487, 1104, 1491, 1750, 2648
PfoI	TCCNGGA	2 cut(s)	117, 2316
PkrI	GCNGC	6 cut(s)	668, 1166, 1624, 1725, 1826, 2413
PleI	GAGTC	3 cut(s)	1008, 1549, 1996
PpsI	GAGTC	3 cut(s)	1008, 1549, 1996
PscI	ACATGT	1 cut(s)	696
PshBI	ATTAAT	1 cut(s)	417
Psp6I	CCWGG	4 cut(s)	117, 1092, 1197, 2316
PspFI	CCCAGC	2 cut(s)	1322, 1642
PspGI	CCWGG	4 cut(s)	117, 1092, 1197, 2316
PspN4I	GGNNCC	7 cut(s)	107, 154, 175, 511, 1705, 2148, 2487
PspOMI	GGGCCC	1 cut(s)	509
PspPI	GGNCC	9 cut(s)	509, 510, 905, 1364, 1673, 1687, 1887, 1898, 2594
PsuI	RGATCY	4 cut(s)	725, 1305, 1390, 2485
PvuII	CAGCTG	1 cut(s)	1039
RsaI	GTAC	3 cut(s)	979, 1862, 2214
RsaNI	GTAC	3 cut(s)	978, 1861, 2213
SapI	GCTCTTC	1 cut(s)	2394
SaqAI	TTAA	9 cut(s)	189, 417, 545, 639, 1224, 1401, 1571, 1719, 2352
SatI	GCNGC	6 cut(s)	667, 1165, 1623, 1724, 1825, 2412
Sau96I	GGNCC	9 cut(s)	509, 510, 905, 1364, 1673, 1687, 1887, 1898, 2594
SchI	GAGTC	3 cut(s)	1008, 1549, 1997
ScrFI	CCNGG	8 cut(s)	78, 119, 508, 1094, 1199, 1901, 2119, 2318
SduI	GDGCHC	3 cut(s)	178, 513, 2290
SfaNI	GCATC	3 cut(s)	1350, 1811, 2151
SfcI	CTRYAG	3 cut(s)	981, 1386, 1458
SinI	GGWCC	2 cut(s)	1364, 1673
SmiI	ATTTAAAT	1 cut(s)	1572
SmlI	CTYRAG	1 cut(s)	1606
SmoI	CTYRAG	1 cut(s)	1606
SpeI	ACTAGT	3 cut(s)	1207, 1289, 2323
SphI	GCATGC	1 cut(s)	2449
SseBI	AGGCCT	2 cut(s)	1418, 2422
SsiI	CCGC	5 cut(s)	41, 89, 136, 562, 828
SspI	AATATT	1 cut(s)	574
SspMI	CTAG	7 cut(s)	495, 680, 1011, 1208, 1290, 2078, 2324
StuI	AGGCCT	2 cut(s)	1418, 2422
StyD4I	CCNGG	8 cut(s)	76, 117, 506, 1092, 1197, 1899, 2117, 2316
StyI	CCWWGG	3 cut(s)	1299, 2333, 2597
SwaI	ATTTAAAT	1 cut(s)	1572
TaaI	ACNGT	2 cut(s)	212, 1114
TaqI	TCGA	3 cut(s)	273, 2011, 2498
TatI	WGTACW	2 cut(s)	1860, 2212
TfiI	GAWTC	6 cut(s)	8, 487, 1104, 1491, 1750, 2648
Tru1I	TTAA	9 cut(s)	189, 417, 545, 639, 1224, 1401, 1571, 1719, 2352
Tru9I	TTAA	9 cut(s)	189, 417, 545, 639, 1224, 1401, 1571, 1719, 2352
TscAI	CASTG	5 cut(s)	727, 853, 958, 1282, 2442
TseI	GCWGC	6 cut(s)	666, 1164, 1622, 1723, 1824, 2411
TspGWI	ACGGA	1 cut(s)	1298
TspRI	CASTG	5 cut(s)	727, 853, 958, 1282, 2442
VpaK11BI	GGWCC	2 cut(s)	1364, 1673
VspI	ATTAAT	1 cut(s)	417
XagI	CCTNNNNNAGG	2 cut(s)	1350, 1982
XapI	RAATTY	6 cut(s)	70, 657, 853, 914, 1598, 1757
XbaI	TCTAGA	1 cut(s)	1010
XceI	RCATGY	2 cut(s)	700, 2449
XcmI	CCANNNNNNNNNTGG	1 cut(s)	821
XspI	CTAG	7 cut(s)	495, 680, 1011, 1208, 1290, 2078, 2324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.