RLG00000032873

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000292
Physical Location & Seq
Reverse (-)
20232969 .. 20235544
2576 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032873

Sequence Viewer

Length: 477 bp
ATGGCAACCGGGTTTGAGCACTTGTGCGAGAGGCTTGTTTTGCCTTTGGAGCAAAATAAGCAATTAGTTGTGGGAGAGTTCGAACATGGAGAGGCCCATGTGGAAGAAGTAACTTCTGGTACTTTAGAGATCCGTTTATTCTGGGCTGGGAAAGGGACAACATGTGTTCCTTACAGAGGAGACTATGGTCCTCTTATATCAGCTATCTCTATAGATTCTGACTTTCCACCCCTCAAGAAACCCAGCCAGGAGGTGGAAGCAGCGAACAAGGGCCTTCTATCAGATGACACTGCAATTGCTGTTAAGAAGCTTTTTGCCAAATCAAAGCAAGGGAATCGTGAATTTGTGAATGGGATTGGCATGATTTCTGCTCTGCAACACCCTTACCTTGTCAAGCTTTATGGATGTTGTATTGAAGGAAATGACTTGTTGCTTGTCTATGAGTACTTGGAAAATAATAGCGTTGCTGTTTGGTAA

Protein Analysis

159

Amino Acids

17.44

Weight (kDa)

5.07

Isoelectric Point (pI)

16.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 95 - 154 9.2e-09 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 95 - 155 5.1e-06 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000292)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53420 AT3G14840
fragaria_vesca FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17851
malus_domestica MD03G1246600.v1.1 MD06G1045200.v1.1 MD06G1045400.v1.1 MD11G1267800.v1.1 MD11G1267900.v1.1 MD11G1268100.v1.1 MD11G1268300.v1.1 MD11G1268500.v1.1 MD11G1268600.v1.1
prunus_persica Prupe.4G157700_v2.0.a1 Prupe.4G157700_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1
pyrus_communis pycom03g19540 pycom11g23600 pycom11g23630 pycom11g23690 pycom11g23720 pycom11g23730 pycom11g23740 pycom11g23750
rosa_chinensis RchiOBHm_Chr0c40g0503411 RchiOBHm_Chr0c40g0503421 RchiOBHm_Chr5g0029631 RchiOBHm_Chr5g0029661 RchiOBHm_Chr5g0029701 RchiOBHm_Chr5g0029741 RchiOBHm_Chr5g0029771 RchiOBHm_Chr5g0029781 RchiOBHm_Chr5g0029811 RchiOBHm_Chr5g0029851 RchiOBHm_Chr5g0029871 RchiOBHm_Chr5g0029891 RchiOBHm_Chr7g0222221
rosa_laevigata RLG00000017380 RLG00000032873 RLG00000033188 RLG00000033190 RLG00000033192 RLG00000033193 RLG00000033194 RLG00000033196 RLG00000033199 RLG00000033238
rosa_multiflora Rmu_co8359987.1_g000001 Rmu_co8444909.1_g000001 Rmu_sc0001608.1_g000007 Rmu_sc0001608.1_g000009 Rmu_sc0001608.1_g000013 Rmu_sc0001608.1_g000018 Rmu_sc0001608.1_g000023 Rmu_sc0001608.1_g000040 Rmu_sc0003238.1_g000016 Rmu_sc0003368.1_g000026 Rmu_sc0003368.1_g000034 Rmu_sc0003368.1_g000043 Rmu_sc0003368.1_g000047 Rmu_sc0003368.1_g000052 Rmu_sc0003368.1_g000054 Rmu_sc0004963.1_g000001
rosa_roxburghii Rroxscaffold_1G00050080 Rroxscaffold_1G00050090 Rroxscaffold_1G00050110 Rroxscaffold_1G00050120 Rroxscaffold_1G00050180 Rroxscaffold_1G00050190 Rroxscaffold_1G00050220 Rroxscaffold_1G00050270 Rroxscaffold_1G00050300
rosa_rugosa Rorug04G0065200 Rorug05G0114900 Rorug05G0115000 Rorug05G0115100 Rorug05G0120100 Rorug05G0238900
rosa_samantha Rh5AG207800 Rh5AG208000 Rh5AG208300 Rh5AG208400 Rh5AG208800 Rh5AG294900 Rh5AG295000 Rh5AG295400 Rh5CG230400 Rh7AG347800
rosa_wichuraiana Rw0G005370 Rw0G012460 Rw0G019060 Rw5G018910 Rw5G018920 Rw5G018930 Rw5G018940 Rw5G018960 Rw5G018970 Rw5G018980 Rw5G018990 Rw5G019000 Rw7G029840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 253
AclWI GGATC 1 cut(s) 124
AcsI RAATTY 1 cut(s) 341
AfaI GTAC 2 cut(s) 121, 446
AfiI CCNNNNNNNGG 2 cut(s) 176, 253
AflIII ACRYGT 1 cut(s) 161
AgsI TTSAA 1 cut(s) 416
AjnI CCWGG 1 cut(s) 246
AluBI AGCT 3 cut(s) 203, 310, 397
AluI AGCT 3 cut(s) 203, 310, 397
Alw21I GWGCWC 1 cut(s) 21
Alw26I GTCTC 1 cut(s) 174
AlwI GGATC 1 cut(s) 124
AoxI GGCC 2 cut(s) 93, 271
ApeKI GCWGC 1 cut(s) 260
ApoI RAATTY 1 cut(s) 341
AspS9I GGNCC 3 cut(s) 94, 188, 271
AsuC2I CCSGG 1 cut(s) 10
AsuII TTCGAA 1 cut(s) 81
AvaII GGWCC 1 cut(s) 188
Bbv12I GWGCWC 1 cut(s) 21
BbvI GCAGC 1 cut(s) 272
BcgI CGANNNNNNTGC 2 cut(s) 317, 351
BciT130I CCWGG 1 cut(s) 248
BcnI CCSGG 1 cut(s) 10
BcoDI GTCTC 1 cut(s) 174
BfmI CTRYAG 1 cut(s) 210
BisI GCNGC 1 cut(s) 261
BlsI GCNGC 1 cut(s) 262
BmcAI AGTACT 1 cut(s) 446
Bme1390I CCNGG 2 cut(s) 10, 248
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 3 cut(s) 94, 188, 271
BmrFI CCNGG 2 cut(s) 10, 248
BoxI GACNNNNGTC 1 cut(s) 186
Bpu14I TTCGAA 1 cut(s) 81
BpuEI CTTGAG 1 cut(s) 218
BpuMI CCSGG 1 cut(s) 10
Bsc4I CCNNNNNNNGG 2 cut(s) 176, 253
BseBI CCWGG 1 cut(s) 248
BseGI GGATG 1 cut(s) 410
BseLI CCNNNNNNNGG 2 cut(s) 176, 253
BseRI GAGGAG 1 cut(s) 192
BseXI GCAGC 1 cut(s) 272
BseYI CCCAGC 2 cut(s) 146, 242
BshFI GGCC 2 cut(s) 95, 273
BsiHKAI GWGCWC 1 cut(s) 21
BsiSI CCGG 1 cut(s) 9
BslFI GGGAC 1 cut(s) 169
BslI CCNNNNNNNGG 2 cut(s) 176, 253
BsmAI GTCTC 1 cut(s) 174
BsmFI GGGAC 1 cut(s) 169
BsnI GGCC 2 cut(s) 95, 273
Bsp119I TTCGAA 1 cut(s) 81
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 1 cut(s) 129
BspANI GGCC 2 cut(s) 95, 273
BspPI GGATC 1 cut(s) 124
BspT104I TTCGAA 1 cut(s) 81
BssMI GATC 1 cut(s) 129
Bst2UI CCWGG 1 cut(s) 248
BstBI TTCGAA 1 cut(s) 81
BstENI CCTNNNNNAGG 1 cut(s) 174
BstF5I GGATG 1 cut(s) 410
BstKTI GATC 1 cut(s) 132
BstMAI GTCTC 1 cut(s) 174
BstMBI GATC 1 cut(s) 129
BstMWI GCNNNNNNNGC 3 cut(s) 40, 49, 58
BstNI CCWGG 1 cut(s) 248
BstNSI RCATGY 1 cut(s) 165
BstPAI GACNNNNGTC 1 cut(s) 186
BstSCI CCNGG 2 cut(s) 8, 246
BstSFI CTRYAG 1 cut(s) 210
BstV1I GCAGC 1 cut(s) 272
BstX2I RGATCY 1 cut(s) 129
BstYI RGATCY 1 cut(s) 129
BsuRI GGCC 2 cut(s) 95, 273
BtsCI GGATG 1 cut(s) 410
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 1 cut(s) 288
Cfr13I GGNCC 3 cut(s) 94, 188, 271
Csp6I GTAC 2 cut(s) 120, 445
CviAII CATG 4 cut(s) 86, 98, 162, 361
CviJI RGCY 8 cut(s) 34, 95, 146, 203, 246, 273, 310, 397
CviKI_1 RGCY 8 cut(s) 34, 95, 146, 203, 246, 273, 310, 397
CviQI GTAC 2 cut(s) 120, 445
DpnI GATC 1 cut(s) 131
DpnII GATC 1 cut(s) 129
Eco47I GGWCC 1 cut(s) 188
EcoNI CCTNNNNNAGG 1 cut(s) 174
EcoO109I RGGNCCY 1 cut(s) 271
EcoRII CCWGG 1 cut(s) 246
FaeI CATG 4 cut(s) 89, 101, 165, 364
FaiI YATR 9 cut(s) 87, 99, 163, 186, 197, 212, 362, 402, 441
FaqI GGGAC 1 cut(s) 169
FatI CATG 4 cut(s) 85, 97, 161, 360
Fnu4HI GCNGC 1 cut(s) 261
FokI GGATG 1 cut(s) 417
Fsp4HI GCNGC 1 cut(s) 261
GluI GCNGC 1 cut(s) 261
GsaI CCCAGC 2 cut(s) 150, 246
HaeIII GGCC 2 cut(s) 95, 273
HapII CCGG 1 cut(s) 9
Hin1II CATG 4 cut(s) 89, 101, 165, 364
HindIII AAGCTT 2 cut(s) 308, 395
HinfI GANTC 2 cut(s) 215, 334
HpaII CCGG 1 cut(s) 9
Hpy188I TCNGA 2 cut(s) 220, 283
Hpy188III TCNNGA 2 cut(s) 235, 338
HpyAV CCTTC 2 cut(s) 284, 410
HpyCH4V TGCA 2 cut(s) 293, 376
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 49, 58
Hsp92II CATG 4 cut(s) 89, 101, 165, 364
Kzo9I GATC 1 cut(s) 129
LmnI GCTCC 1 cut(s) 49
LpnPI CCDG 7 cut(s) 22, 102, 127, 132, 233, 256, 260
Lsp1109I GCAGC 1 cut(s) 272
MaeIII GTNAC 1 cut(s) 109
MalI GATC 1 cut(s) 131
MboI GATC 1 cut(s) 129
MboII GAAGA 1 cut(s) 116
MfeI CAATTG 1 cut(s) 294
MflI RGATCY 1 cut(s) 129
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 3 cut(s) 62, 294, 341
MnlI CCTC 6 cut(s) 24, 85, 170, 201, 242, 244
MseI TTAA 1 cut(s) 303
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 2 cut(s) 10, 248
MunI CAATTG 1 cut(s) 294
MvaI CCWGG 1 cut(s) 248
MwoI GCNNNNNNNGC 3 cut(s) 40, 49, 58
NciI CCSGG 1 cut(s) 10
NdeII GATC 1 cut(s) 129
NlaIII CATG 4 cut(s) 89, 101, 165, 364
NspI RCATGY 1 cut(s) 165
NspV TTCGAA 1 cut(s) 81
PciI ACATGT 1 cut(s) 161
PfeI GAWTC 2 cut(s) 215, 334
PflMI CCANNNNNTGG 1 cut(s) 253
PkrI GCNGC 1 cut(s) 262
PscI ACATGT 1 cut(s) 161
PshAI GACNNNNGTC 1 cut(s) 186
Psp6I CCWGG 1 cut(s) 246
PspFI CCCAGC 2 cut(s) 146, 242
PspGI CCWGG 1 cut(s) 246
PspPI GGNCC 3 cut(s) 94, 188, 271
PsuI RGATCY 1 cut(s) 129
RsaI GTAC 2 cut(s) 121, 446
RsaNI GTAC 2 cut(s) 120, 445
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 1 cut(s) 261
Sau3AI GATC 1 cut(s) 129
Sau96I GGNCC 3 cut(s) 94, 188, 271
ScaI AGTACT 1 cut(s) 446
ScrFI CCNGG 2 cut(s) 10, 248
SduI GDGCHC 1 cut(s) 21
SetI ASST 5 cut(s) 205, 255, 312, 390, 399
SfcI CTRYAG 1 cut(s) 210
SfuI TTCGAA 1 cut(s) 81
SinI GGWCC 1 cut(s) 188
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 3 cut(s) 62, 294, 341
StyD4I CCNGG 2 cut(s) 8, 246
TaqI TCGA 1 cut(s) 81
TasI AATT 3 cut(s) 62, 294, 341
TatI WGTACW 1 cut(s) 444
TfiI GAWTC 2 cut(s) 215, 334
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TscAI CASTG 1 cut(s) 295
TseI GCWGC 1 cut(s) 260
TspGWI ACGGA 1 cut(s) 122
TspRI CASTG 1 cut(s) 295
Van91I CCANNNNNTGG 1 cut(s) 253
VpaK11BI GGWCC 1 cut(s) 188
XagI CCTNNNNNAGG 1 cut(s) 174
XapI RAATTY 1 cut(s) 341
XceI RCATGY 1 cut(s) 165
XcmI CCANNNNNNNNNTGG 1 cut(s) 250
ZrmI AGTACT 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.