Rw5G018920

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000292
Physical Location & Seq
Reverse (-)
24351291 .. 24353266
1976 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G018920.1

Sequence Viewer

Length: 870 bp
ATGATTTCTGCTCTGCAACACCCTCACCTTGTCAAGCTTTATGGATGCTGTATTGAAGGAAATAACTTGTTGCTTGTCTATGAGTACATGGAAAACAATAGTCTCGCACGTGCTCTATTTGGCCCAAAAGAAAGTCAGGTGAAGTTGGACTGGCCAACAAGGCATAGGATTTGTGTTGGTATAGCCAGAGGCTTGGCTTACCTCCATGAGGAATCAAGGTTGAAGATCGTTCATAGAGACATCAAAGCTACTAATGTGCTACTTGATAAAAATCTTTTCCCAAAGATATCTGACTTTGGATTGGCCAAGCTTGATGAAGACGATAATACCCACATAAGCACTCGGATTGCTGGAACTTTTGGTTATATGGCACCTGAATATGCAATGCGAGGTTATCTGACTGATAAAGCAGATGTTTATAGTTTCGGAATTCTTGTATTGGAAATGGTCAGTGGAAGGTGCAATACAACTTACCGCTCAAAGGAAGAATGTTTTTATCTTCTAGATTGGGCACTTCTTCTAAAAGAGAGAGCAAGTTTGTTGGACCTGGTGGATCCAAGGTTGGACTCAGAGTTTAACAAAGCAGAGATGATTACTACGATCAATATTGCTCTCCTTTGTGCCAATACTTCTTCAGCAGTTAGACCTGCCATGTCTTCAGTGGTAAGCATGCTTGAAGGTAAGTCTTCTGTTCAAGAGGTGGTCTTTGATCCAAACGCCTCAATTAATGAAATCAATGCGATGAGGAAACATTTTCAATCCAATATTGAAGAAAACAATGGTGACCCTGAGAGTCAGAAACAAACTATTTTTGAATCTGTGGGGGATTGCTGGTTTTTTTATTTAAATTCAAGTGTCATGTCTTTTTGA

Protein Analysis

289

Amino Acids

32.69

Weight (kDa)

5.44

Isoelectric Point (pI)

41.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 2 - 159 2.9e-37 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 2 - 157 3.3e-35 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000292)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53420 AT3G14840
fragaria_vesca FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17851
malus_domestica MD03G1246600.v1.1 MD06G1045200.v1.1 MD06G1045400.v1.1 MD11G1267800.v1.1 MD11G1267900.v1.1 MD11G1268100.v1.1 MD11G1268300.v1.1 MD11G1268500.v1.1 MD11G1268600.v1.1
prunus_persica Prupe.4G157700_v2.0.a1 Prupe.4G157700_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1
pyrus_communis pycom03g19540 pycom11g23600 pycom11g23630 pycom11g23690 pycom11g23720 pycom11g23730 pycom11g23740 pycom11g23750
rosa_chinensis RchiOBHm_Chr0c40g0503411 RchiOBHm_Chr0c40g0503421 RchiOBHm_Chr5g0029631 RchiOBHm_Chr5g0029661 RchiOBHm_Chr5g0029701 RchiOBHm_Chr5g0029741 RchiOBHm_Chr5g0029771 RchiOBHm_Chr5g0029781 RchiOBHm_Chr5g0029811 RchiOBHm_Chr5g0029851 RchiOBHm_Chr5g0029871 RchiOBHm_Chr5g0029891 RchiOBHm_Chr7g0222221
rosa_laevigata RLG00000017380 RLG00000032873 RLG00000033188 RLG00000033190 RLG00000033192 RLG00000033193 RLG00000033194 RLG00000033196 RLG00000033199 RLG00000033238
rosa_multiflora Rmu_co8359987.1_g000001 Rmu_co8444909.1_g000001 Rmu_sc0001608.1_g000007 Rmu_sc0001608.1_g000009 Rmu_sc0001608.1_g000013 Rmu_sc0001608.1_g000018 Rmu_sc0001608.1_g000023 Rmu_sc0001608.1_g000040 Rmu_sc0003238.1_g000016 Rmu_sc0003368.1_g000026 Rmu_sc0003368.1_g000034 Rmu_sc0003368.1_g000043 Rmu_sc0003368.1_g000047 Rmu_sc0003368.1_g000052 Rmu_sc0003368.1_g000054 Rmu_sc0004963.1_g000001
rosa_roxburghii Rroxscaffold_1G00050080 Rroxscaffold_1G00050090 Rroxscaffold_1G00050110 Rroxscaffold_1G00050120 Rroxscaffold_1G00050180 Rroxscaffold_1G00050190 Rroxscaffold_1G00050220 Rroxscaffold_1G00050270 Rroxscaffold_1G00050300
rosa_rugosa Rorug04G0065200 Rorug05G0114900 Rorug05G0115000 Rorug05G0115100 Rorug05G0120100 Rorug05G0238900
rosa_samantha Rh5AG207800 Rh5AG208000 Rh5AG208300 Rh5AG208400 Rh5AG208800 Rh5AG294900 Rh5AG295000 Rh5AG295400 Rh5CG230400 Rh7AG347800
rosa_wichuraiana Rw0G005370 Rw0G012460 Rw0G019060 Rw5G018910 Rw5G018920 Rw5G018930 Rw5G018940 Rw5G018960 Rw5G018970 Rw5G018980 Rw5G018990 Rw5G019000 Rw7G029840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 655
AccB1I GGYRCC 1 cut(s) 370
AccBSI CCGCTC 1 cut(s) 477
AciI CCGC 1 cut(s) 475
AclWI GGATC 3 cut(s) 548, 561, 704
AcoI YGGCCR 2 cut(s) 152, 303
AcsI RAATTY 2 cut(s) 429, 847
AcuI CTGAAG 2 cut(s) 618, 642
AcvI CACGTG 1 cut(s) 110
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 2 cut(s) 208, 481
AgsI TTSAA 8 cut(s) 56, 223, 677, 695, 758, 770, 815, 852
AjnI CCWGG 1 cut(s) 546
AluBI AGCT 3 cut(s) 37, 248, 310
AluI AGCT 3 cut(s) 37, 248, 310
Alw21I GWGCWC 1 cut(s) 115
Alw26I GTCTC 2 cut(s) 107, 231
AlwI GGATC 3 cut(s) 548, 561, 704
AoxI GGCC 3 cut(s) 121, 152, 303
ApoI RAATTY 2 cut(s) 429, 847
AseI ATTAAT 1 cut(s) 726
AspS9I GGNCC 2 cut(s) 122, 544
AsuHPI GGTGA 3 cut(s) 17, 151, 794
AvaII GGWCC 1 cut(s) 544
BaeGI GKGCMC 1 cut(s) 514
BalI TGGCCA 2 cut(s) 154, 305
BamHI GGATCC 1 cut(s) 553
BanI GGYRCC 1 cut(s) 370
BarI GAAGNNNNNNTAC 2 cut(s) 448, 480
BbrPI CACGTG 1 cut(s) 110
BbsI GAAGAC 3 cut(s) 324, 648, 678
Bbv12I GWGCWC 1 cut(s) 115
BciT130I CCWGG 1 cut(s) 548
BcoDI GTCTC 2 cut(s) 107, 231
BfaI CTAG 1 cut(s) 503
BfuAI ACCTGC 1 cut(s) 655
BglI GCCNNNNNGGC 1 cut(s) 160
Bme1390I CCNGG 1 cut(s) 548
Bme18I GGWCC 1 cut(s) 544
BmgT120I GGNCC 2 cut(s) 122, 544
BmiI GGNNCC 2 cut(s) 372, 555
BmrFI CCNGG 1 cut(s) 548
BmsI GCATC 1 cut(s) 35
BpiI GAAGAC 3 cut(s) 324, 648, 678
BsaAI YACGTR 1 cut(s) 110
BsaBI GATNNNNATC 1 cut(s) 270
BsaJI CCNNGG 1 cut(s) 557
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 481
Bse1I ACTGG 1 cut(s) 155
Bse3DI GCAATG 1 cut(s) 390
Bse8I GATNNNNATC 1 cut(s) 270
BseBI CCWGG 1 cut(s) 548
BseDI CCNNGG 1 cut(s) 557
BseGI GGATG 1 cut(s) 50
BseJI GATNNNNATC 1 cut(s) 270
BseLI CCNNNNNNNGG 2 cut(s) 208, 481
BseMI GCAATG 1 cut(s) 390
BseMII CTCAG 2 cut(s) 582, 780
BseNI ACTGG 1 cut(s) 155
BseSI GKGCMC 1 cut(s) 514
BshFI GGCC 3 cut(s) 123, 154, 305
BshNI GGYRCC 1 cut(s) 370
BsiHKAI GWGCWC 1 cut(s) 115
BslI CCNNNNNNNGG 2 cut(s) 208, 481
BsmAI GTCTC 2 cut(s) 107, 231
BsnI GGCC 3 cut(s) 123, 154, 305
Bsp1286I GDGCHC 2 cut(s) 115, 514
Bsp143I GATC 4 cut(s) 225, 553, 600, 709
BspACI CCGC 1 cut(s) 475
BspANI GGCC 3 cut(s) 123, 154, 305
BspCNI CTCAG 2 cut(s) 581, 781
BspLI GGNNCC 2 cut(s) 372, 555
BspMI ACCTGC 1 cut(s) 655
BspPI GGATC 3 cut(s) 548, 561, 704
BspT107I GGYRCC 1 cut(s) 370
BsrBI CCGCTC 1 cut(s) 477
BsrDI GCAATG 1 cut(s) 390
BsrI ACTGG 1 cut(s) 155
BssECI CCNNGG 1 cut(s) 557
BssMI GATC 4 cut(s) 225, 553, 600, 709
BssT1I CCWWGG 1 cut(s) 557
Bst2UI CCWGG 1 cut(s) 548
BstBAI YACGTR 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 671
BstDEI CTNAG 2 cut(s) 568, 789
BstEII GGTNACC 1 cut(s) 782
BstENI CCTNNNNNAGG 1 cut(s) 206
BstF5I GGATG 1 cut(s) 50
BstKTI GATC 4 cut(s) 228, 556, 603, 712
BstMAI GTCTC 2 cut(s) 107, 231
BstMBI GATC 4 cut(s) 225, 553, 600, 709
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstNI CCWGG 1 cut(s) 548
BstNSI RCATGY 1 cut(s) 673
BstPI GGTNACC 1 cut(s) 782
BstSCI CCNGG 1 cut(s) 546
BstSLI GKGCMC 1 cut(s) 514
BstV2I GAAGAC 3 cut(s) 324, 648, 678
BstX2I RGATCY 1 cut(s) 553
BstXI CCANNNNNNTGG 1 cut(s) 193
BstYI RGATCY 1 cut(s) 553
BsuRI GGCC 3 cut(s) 123, 154, 305
BtgZI GCGATG 1 cut(s) 755
BtsCI GGATG 1 cut(s) 50
BtsIMutI CAGTG 2 cut(s) 457, 666
BveI ACCTGC 1 cut(s) 655
Cac8I GCNNGC 1 cut(s) 671
Cfr13I GGNCC 2 cut(s) 122, 544
CsiI ACCWGGT 1 cut(s) 546
Csp6I GTAC 1 cut(s) 85
CviAII CATG 5 cut(s) 88, 206, 652, 670, 859
CviJI RGCY 9 cut(s) 37, 123, 154, 185, 192, 197, 248, 305, 310
CviKI_1 RGCY 9 cut(s) 37, 123, 154, 185, 192, 197, 248, 305, 310
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 2 cut(s) 568, 789
DpnI GATC 4 cut(s) 227, 555, 602, 711
DpnII GATC 4 cut(s) 225, 553, 600, 709
DraI TTTAAA 1 cut(s) 846
EaeI YGGCCR 2 cut(s) 152, 303
Eco130I CCWWGG 1 cut(s) 557
Eco32I GATATC 1 cut(s) 288
Eco47I GGWCC 1 cut(s) 544
Eco57I CTGAAG 2 cut(s) 618, 642
Eco72I CACGTG 1 cut(s) 110
Eco91I GGTNACC 1 cut(s) 782
EcoNI CCTNNNNNAGG 1 cut(s) 206
EcoO65I GGTNACC 1 cut(s) 782
EcoRI GAATTC 1 cut(s) 429
EcoRII CCWGG 1 cut(s) 546
EcoRV GATATC 1 cut(s) 288
EcoT14I CCWWGG 1 cut(s) 557
ErhI CCWWGG 1 cut(s) 557
FaeI CATG 5 cut(s) 91, 209, 655, 673, 862
FatI CATG 5 cut(s) 87, 205, 651, 669, 858
FokI GGATG 1 cut(s) 57
FspBI CTAG 1 cut(s) 503
HaeIII GGCC 3 cut(s) 123, 154, 305
Hin1II CATG 5 cut(s) 91, 209, 655, 673, 862
HindIII AAGCTT 2 cut(s) 35, 308
HinfI GANTC 4 cut(s) 212, 566, 793, 815
HphI GGTGA 3 cut(s) 17, 151, 794
Hpy188I TCNGA 6 cut(s) 292, 345, 399, 428, 571, 798
Hpy188III TCNNGA 2 cut(s) 503, 695
HpyAV CCTTC 3 cut(s) 50, 450, 671
HpyCH4IV ACGT 1 cut(s) 109
HpyCH4V TGCA 3 cut(s) 16, 383, 462
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
HpyF3I CTNAG 2 cut(s) 568, 789
HpySE526I ACGT 1 cut(s) 109
Hsp92II CATG 5 cut(s) 91, 209, 655, 673, 862
Kzo9I GATC 4 cut(s) 225, 553, 600, 709
LweI GCATC 1 cut(s) 35
MabI ACCWGGT 1 cut(s) 546
MaeI CTAG 1 cut(s) 503
MaeII ACGT 1 cut(s) 109
MaeIII GTNAC 1 cut(s) 782
MalI GATC 4 cut(s) 227, 555, 602, 711
MbiI CCGCTC 1 cut(s) 477
MboI GATC 4 cut(s) 225, 553, 600, 709
MboII GAAGA 9 cut(s) 235, 329, 491, 497, 509, 624, 648, 678, 782
MflI RGATCY 1 cut(s) 553
MhlI GDGCHC 2 cut(s) 115, 514
MlsI TGGCCA 2 cut(s) 154, 305
MluCI AATT 3 cut(s) 429, 723, 847
MluNI TGGCCA 2 cut(s) 154, 305
MlyI GAGTC 2 cut(s) 560, 802
MmeI TCCRAC 3 cut(s) 126, 522, 543
MnlI CCTC 8 cut(s) 33, 182, 202, 212, 383, 691, 730, 738
Mox20I TGGCCA 2 cut(s) 154, 305
MscI TGGCCA 2 cut(s) 154, 305
MseI TTAA 3 cut(s) 576, 726, 845
Msp20I TGGCCA 2 cut(s) 154, 305
MspR9I CCNGG 1 cut(s) 548
MvaI CCWGG 1 cut(s) 548
MwoI GCNNNNNNNGC 1 cut(s) 160
NdeII GATC 4 cut(s) 225, 553, 600, 709
NlaIII CATG 5 cut(s) 91, 209, 655, 673, 862
NlaIV GGNNCC 2 cut(s) 372, 555
NmuCI GTSAC 1 cut(s) 782
NspI RCATGY 1 cut(s) 673
PaeI GCATGC 1 cut(s) 673
PfeI GAWTC 2 cut(s) 212, 815
PleI GAGTC 2 cut(s) 560, 801
PmaCI CACGTG 1 cut(s) 110
PmlI CACGTG 1 cut(s) 110
PpsI GAGTC 2 cut(s) 560, 801
Ppu21I YACGTR 1 cut(s) 110
PshBI ATTAAT 1 cut(s) 726
Psp6I CCWGG 1 cut(s) 546
PspCI CACGTG 1 cut(s) 110
PspEI GGTNACC 1 cut(s) 782
PspGI CCWGG 1 cut(s) 546
PspN4I GGNNCC 2 cut(s) 372, 555
PspPI GGNCC 2 cut(s) 122, 544
PsuI RGATCY 1 cut(s) 553
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
SaqAI TTAA 3 cut(s) 576, 726, 845
Sau3AI GATC 4 cut(s) 225, 553, 600, 709
Sau96I GGNCC 2 cut(s) 122, 544
SchI GAGTC 2 cut(s) 560, 802
ScrFI CCNGG 1 cut(s) 548
SduI GDGCHC 2 cut(s) 115, 514
SexAI ACCWGGT 1 cut(s) 546
SfaNI GCATC 1 cut(s) 35
SinI GGWCC 1 cut(s) 544
SmiI ATTTAAAT 1 cut(s) 846
SphI GCATGC 1 cut(s) 673
Sse9I AATT 3 cut(s) 429, 723, 847
SsiI CCGC 1 cut(s) 475
SspI AATATT 2 cut(s) 607, 766
SspMI CTAG 1 cut(s) 503
StyD4I CCNGG 1 cut(s) 546
StyI CCWWGG 1 cut(s) 557
SwaI ATTTAAAT 1 cut(s) 846
TaiI ACGT 1 cut(s) 112
TasI AATT 3 cut(s) 429, 723, 847
TatI WGTACW 1 cut(s) 84
TfiI GAWTC 2 cut(s) 212, 815
Tru1I TTAA 3 cut(s) 576, 726, 845
Tru9I TTAA 3 cut(s) 576, 726, 845
TscAI CASTG 2 cut(s) 457, 666
TseFI GTSAC 1 cut(s) 782
Tsp45I GTSAC 1 cut(s) 782
TspDTI ATGAA 3 cut(s) 221, 330, 744
TspRI CASTG 2 cut(s) 457, 666
VpaK11BI GGWCC 1 cut(s) 544
VspI ATTAAT 1 cut(s) 726
XagI CCTNNNNNAGG 1 cut(s) 206
XapI RAATTY 2 cut(s) 429, 847
XbaI TCTAGA 1 cut(s) 502
XceI RCATGY 1 cut(s) 673
XcmI CCANNNNNNNNNTGG 1 cut(s) 658
XspI CTAG 1 cut(s) 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.