Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000292

Physical Location & Seq

Genomic Coordinates Reverse (-)

23669074 .. 23669419

Gene Structure 346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30923

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGTCAAGTCCAGCTCTGGCTGCCACAAACTACTTTGACCCACCTAATAAGATTGGAGAGGGTGGTTTTGGTCCTGTTCACAAGCGGATTTTCACTATGTTTGATGAATGCAGGGCCTTCTCAGATGGCACTATAATTGCTGTTAAGCATCTTTCTGCCAAATCAAAGCAAGGGAATCGTGAATTTGTGAATGAGATTGGCATGATTTCTGCTTTGCAACACCCTCATCTTGTCAAGCTCTATGGATGCTGCATTGAAGGAAATCAATTGTTCCTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

93

Amino Acids

10.21

Weight (kDa)

7.77

Isoelectric Point (pI)

48.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	16 - 93	5e-12	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	16 - 93	1.2e-08	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53420 AT3G14840
fragaria_vesca	FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17851
malus_domestica	MD03G1246600.v1.1 MD06G1045200.v1.1 MD06G1045400.v1.1 MD11G1267800.v1.1 MD11G1267900.v1.1 MD11G1268100.v1.1 MD11G1268300.v1.1 MD11G1268500.v1.1 MD11G1268600.v1.1
prunus_persica	Prupe.4G157700_v2.0.a1 Prupe.4G157700_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1
pyrus_communis	pycom03g19540 pycom11g23600 pycom11g23630 pycom11g23690 pycom11g23720 pycom11g23730 pycom11g23740 pycom11g23750
rosa_chinensis	RchiOBHm_Chr0c40g0503411 RchiOBHm_Chr0c40g0503421 RchiOBHm_Chr5g0029631 RchiOBHm_Chr5g0029661 RchiOBHm_Chr5g0029701 RchiOBHm_Chr5g0029741 RchiOBHm_Chr5g0029771 RchiOBHm_Chr5g0029781 RchiOBHm_Chr5g0029811 RchiOBHm_Chr5g0029851 RchiOBHm_Chr5g0029871 RchiOBHm_Chr5g0029891 RchiOBHm_Chr7g0222221
rosa_laevigata	RLG00000017380 RLG00000032873 RLG00000033188 RLG00000033190 RLG00000033192 RLG00000033193 RLG00000033194 RLG00000033196 RLG00000033199 RLG00000033238
rosa_multiflora	Rmu_co8359987.1_g000001 Rmu_co8444909.1_g000001 Rmu_sc0001608.1_g000007 Rmu_sc0001608.1_g000009 Rmu_sc0001608.1_g000013 Rmu_sc0001608.1_g000018 Rmu_sc0001608.1_g000023 Rmu_sc0001608.1_g000040 Rmu_sc0003238.1_g000016 Rmu_sc0003368.1_g000026 Rmu_sc0003368.1_g000034 Rmu_sc0003368.1_g000043 Rmu_sc0003368.1_g000047 Rmu_sc0003368.1_g000052 Rmu_sc0003368.1_g000054 Rmu_sc0004963.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050080 Rroxscaffold_1G00050090 Rroxscaffold_1G00050110 Rroxscaffold_1G00050120 Rroxscaffold_1G00050180 Rroxscaffold_1G00050190 Rroxscaffold_1G00050220 Rroxscaffold_1G00050270 Rroxscaffold_1G00050300
rosa_rugosa	Rorug04G0065200 Rorug05G0114900 Rorug05G0115000 Rorug05G0115100 Rorug05G0120100 Rorug05G0238900
rosa_samantha	Rh5AG207800 Rh5AG208000 Rh5AG208300 Rh5AG208400 Rh5AG208800 Rh5AG294900 Rh5AG295000 Rh5AG295400 Rh5CG230400 Rh7AG347800
rosa_wichuraiana	Rw0G005370 Rw0G012460 Rw0G019060 Rw5G018910 Rw5G018920 Rw5G018930 Rw5G018940 Rw5G018960 Rw5G018970 Rw5G018980 Rw5G018990 Rw5G019000 Rw7G029840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	85
AcsI	RAATTY	1 cut(s)	182
AgsI	TTSAA	1 cut(s)	257
AluBI	AGCT	2 cut(s)	14, 238
AluI	AGCT	2 cut(s)	14, 238
AoxI	GGCC	1 cut(s)	114
ApeKI	GCWGC	2 cut(s)	20, 249
ApoI	RAATTY	1 cut(s)	182
AspS9I	GGNCC	2 cut(s)	71, 114
AvaII	GGWCC	1 cut(s)	71
BbvI	GCAGC	2 cut(s)	7, 236
BccI	CCATC	1 cut(s)	119
BcgI	CGANNNNNNTGC	2 cut(s)	158, 192
BisI	GCNGC	2 cut(s)	21, 250
BlsI	GCNGC	2 cut(s)	22, 251
Bme18I	GGWCC	1 cut(s)	71
BmgT120I	GGNCC	2 cut(s)	71, 114
BmsI	GCATC	2 cut(s)	157, 236
BseGI	GGATG	1 cut(s)	251
BseMII	CTCAG	1 cut(s)	135
BseXI	GCAGC	2 cut(s)	7, 236
BshFI	GGCC	1 cut(s)	116
BsmI	GAATGC	1 cut(s)	113
BsnI	GGCC	1 cut(s)	116
BspACI	CCGC	1 cut(s)	85
BspANI	GGCC	1 cut(s)	116
BspCNI	CTCAG	1 cut(s)	134
BstDEI	CTNAG	1 cut(s)	121
BstF5I	GGATG	1 cut(s)	251
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstV1I	GCAGC	2 cut(s)	7, 236
BsuRI	GGCC	1 cut(s)	116
BtsCI	GGATG	1 cut(s)	251
Cfr13I	GGNCC	2 cut(s)	71, 114
CviAII	CATG	1 cut(s)	202
CviJI	RGCY	4 cut(s)	14, 20, 116, 238
CviKI_1	RGCY	4 cut(s)	14, 20, 116, 238
DdeI	CTNAG	1 cut(s)	121
Eco47I	GGWCC	1 cut(s)	71
EcoO109I	RGGNCCY	1 cut(s)	114
FaeI	CATG	1 cut(s)	205
FaiI	YATR	4 cut(s)	98, 134, 203, 243
FatI	CATG	1 cut(s)	201
Fnu4HI	GCNGC	2 cut(s)	21, 250
FokI	GGATG	1 cut(s)	258
Fsp4HI	GCNGC	2 cut(s)	21, 250
GluI	GCNGC	2 cut(s)	21, 250
HaeIII	GGCC	1 cut(s)	116
Hin1II	CATG	1 cut(s)	205
HinfI	GANTC	1 cut(s)	175
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	1 cut(s)	124
Hpy188III	TCNNGA	1 cut(s)	179
Hpy8I	GTNNAC	1 cut(s)	79
HpyAV	CCTTC	2 cut(s)	127, 251
HpyCH4V	TGCA	3 cut(s)	111, 217, 252
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
HpyF3I	CTNAG	1 cut(s)	121
Hsp92II	CATG	1 cut(s)	205
LpnPI	CCDG	4 cut(s)	2, 24, 87, 97
Lsp1109I	GCAGC	2 cut(s)	7, 236
LweI	GCATC	2 cut(s)	157, 236
MfeI	CAATTG	1 cut(s)	266
MluCI	AATT	3 cut(s)	135, 182, 266
MnlI	CCTC	2 cut(s)	52, 234
MseI	TTAA	1 cut(s)	144
MunI	CAATTG	1 cut(s)	266
Mva1269I	GAATGC	1 cut(s)	113
MwoI	GCNNNNNNNGC	1 cut(s)	20
NlaIII	CATG	1 cut(s)	205
PctI	GAATGC	1 cut(s)	113
PfeI	GAWTC	1 cut(s)	175
PkrI	GCNGC	2 cut(s)	22, 251
PspPI	GGNCC	2 cut(s)	71, 114
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	2 cut(s)	21, 250
Sau96I	GGNCC	2 cut(s)	71, 114
SetI	ASST	3 cut(s)	16, 46, 240
SfaNI	GCATC	2 cut(s)	157, 236
SinI	GGWCC	1 cut(s)	71
Sse9I	AATT	3 cut(s)	135, 182, 266
SsiI	CCGC	1 cut(s)	85
TasI	AATT	3 cut(s)	135, 182, 266
TfiI	GAWTC	1 cut(s)	175
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TseI	GCWGC	2 cut(s)	20, 249
TspDTI	ATGAA	1 cut(s)	120
VpaK11BI	GGWCC	1 cut(s)	71
XapI	RAATTY	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.