Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0000292

Physical Location & Seq

Genomic Coordinates Forward (+)

26754536 .. 26754745

Gene Structure 210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g23740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGCTCGAAGGAAAGGCTGTTGTTCAGGAGTTGGTCTTGGATCCAAATGCCGAGAGTATTGAGATCGACGCAATGAGGAAACATAAATATAGTTTTGGAAGGGGCACGGGCGAGAAACAAATAGAAACGGGGTCAACTGAAGGGCCATGGACTGCTTCGTCTGCGTCTACTCACGATCTGTATCCCATCAATCCTGATTCAAATTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

70

Amino Acids

7.57

Weight (kDa)

4.74

Isoelectric Point (pI)

35.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53420 AT3G14840
fragaria_vesca	FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17851
malus_domestica	MD03G1246600.v1.1 MD06G1045200.v1.1 MD06G1045400.v1.1 MD11G1267800.v1.1 MD11G1267900.v1.1 MD11G1268100.v1.1 MD11G1268300.v1.1 MD11G1268500.v1.1 MD11G1268600.v1.1
prunus_persica	Prupe.4G157700_v2.0.a1 Prupe.4G157700_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1
pyrus_communis	pycom03g19540 pycom11g23600 pycom11g23630 pycom11g23690 pycom11g23720 pycom11g23730 pycom11g23740 pycom11g23750
rosa_chinensis	RchiOBHm_Chr0c40g0503411 RchiOBHm_Chr0c40g0503421 RchiOBHm_Chr5g0029631 RchiOBHm_Chr5g0029661 RchiOBHm_Chr5g0029701 RchiOBHm_Chr5g0029741 RchiOBHm_Chr5g0029771 RchiOBHm_Chr5g0029781 RchiOBHm_Chr5g0029811 RchiOBHm_Chr5g0029851 RchiOBHm_Chr5g0029871 RchiOBHm_Chr5g0029891 RchiOBHm_Chr7g0222221
rosa_laevigata	RLG00000017380 RLG00000032873 RLG00000033188 RLG00000033190 RLG00000033192 RLG00000033193 RLG00000033194 RLG00000033196 RLG00000033199 RLG00000033238
rosa_multiflora	Rmu_co8359987.1_g000001 Rmu_co8444909.1_g000001 Rmu_sc0001608.1_g000007 Rmu_sc0001608.1_g000009 Rmu_sc0001608.1_g000013 Rmu_sc0001608.1_g000018 Rmu_sc0001608.1_g000023 Rmu_sc0001608.1_g000040 Rmu_sc0003238.1_g000016 Rmu_sc0003368.1_g000026 Rmu_sc0003368.1_g000034 Rmu_sc0003368.1_g000043 Rmu_sc0003368.1_g000047 Rmu_sc0003368.1_g000052 Rmu_sc0003368.1_g000054 Rmu_sc0004963.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050080 Rroxscaffold_1G00050090 Rroxscaffold_1G00050110 Rroxscaffold_1G00050120 Rroxscaffold_1G00050180 Rroxscaffold_1G00050190 Rroxscaffold_1G00050220 Rroxscaffold_1G00050270 Rroxscaffold_1G00050300
rosa_rugosa	Rorug04G0065200 Rorug05G0114900 Rorug05G0115000 Rorug05G0115100 Rorug05G0120100 Rorug05G0238900
rosa_samantha	Rh5AG207800 Rh5AG208000 Rh5AG208300 Rh5AG208400 Rh5AG208800 Rh5AG294900 Rh5AG295000 Rh5AG295400 Rh5CG230400 Rh7AG347800
rosa_wichuraiana	Rw0G005370 Rw0G012460 Rw0G019060 Rw5G018910 Rw5G018920 Rw5G018930 Rw5G018940 Rw5G018960 Rw5G018970 Rw5G018980 Rw5G018990 Rw5G019000 Rw7G029840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	157
AccI	GTMKAC	1 cut(s)	167
AclWI	GGATC	2 cut(s)	35, 48
AcuI	CTGAAG	1 cut(s)	159
AgsI	TTSAA	1 cut(s)	201
AlwI	GGATC	2 cut(s)	35, 48
AoxI	GGCC	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	143
BaeGI	GKGCMC	1 cut(s)	107
BamHI	GGATCC	1 cut(s)	40
BccI	CCATC	1 cut(s)	194
BciVI	GTATCC	1 cut(s)	192
BfaI	CTAG	1 cut(s)	208
BfuI	GTATCC	1 cut(s)	192
BmgT120I	GGNCC	1 cut(s)	143
BmiI	GGNNCC	1 cut(s)	42
BsaBI	GATNNNNATC	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	146
Bse3DI	GCAATG	1 cut(s)	78
Bse8I	GATNNNNATC	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	146
BseJI	GATNNNNATC	1 cut(s)	180
BseMI	GCAATG	1 cut(s)	78
BseSI	GKGCMC	1 cut(s)	107
BshFI	GGCC	1 cut(s)	145
BsnI	GGCC	1 cut(s)	145
Bsp1286I	GDGCHC	1 cut(s)	107
Bsp143I	GATC	3 cut(s)	40, 63, 175
Bsp19I	CCATGG	1 cut(s)	146
BspANI	GGCC	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	42
BspPI	GGATC	2 cut(s)	35, 48
BsrDI	GCAATG	1 cut(s)	78
BssECI	CCNNGG	1 cut(s)	146
BssMI	GATC	3 cut(s)	40, 63, 175
BssT1I	CCWWGG	1 cut(s)	146
BstDSI	CCRYGG	1 cut(s)	146
BstKTI	GATC	3 cut(s)	43, 66, 178
BstMBI	GATC	3 cut(s)	40, 63, 175
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstSLI	GKGCMC	1 cut(s)	107
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BsuI	GTATCC	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	145
BtgI	CCRYGG	1 cut(s)	146
Cfr13I	GGNCC	1 cut(s)	143
CseI	GACGC	2 cut(s)	77, 153
CviAII	CATG	1 cut(s)	147
CviJI	RGCY	2 cut(s)	17, 145
CviKI_1	RGCY	2 cut(s)	17, 145
DpnI	GATC	3 cut(s)	42, 65, 177
DpnII	GATC	3 cut(s)	40, 63, 175
DrdI	GACNNNNNNGTC	1 cut(s)	157
DseDI	GACNNNNNNGTC	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	146
Eco57I	CTGAAG	1 cut(s)	159
EcoT14I	CCWWGG	1 cut(s)	146
ErhI	CCWWGG	1 cut(s)	146
FaeI	CATG	1 cut(s)	150
FaiI	YATR	3 cut(s)	84, 90, 148
FatI	CATG	1 cut(s)	146
FblI	GTMKAC	1 cut(s)	167
FspBI	CTAG	1 cut(s)	208
HaeIII	GGCC	1 cut(s)	145
HgaI	GACGC	2 cut(s)	77, 153
Hin1II	CATG	1 cut(s)	150
HincII	GTYRAC	1 cut(s)	135
HindII	GTYRAC	1 cut(s)	135
HinfI	GANTC	1 cut(s)	197
Hpy166II	GTNNAC	2 cut(s)	135, 168
Hpy188III	TCNNGA	3 cut(s)	26, 173, 194
Hpy8I	GTNNAC	2 cut(s)	135, 168
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	2 cut(s)	93, 134
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
Hsp92II	CATG	1 cut(s)	150
Kzo9I	GATC	3 cut(s)	40, 63, 175
LpnPI	CCDG	1 cut(s)	11
MaeI	CTAG	1 cut(s)	208
MalI	GATC	3 cut(s)	42, 65, 177
MboI	GATC	3 cut(s)	40, 63, 175
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	1 cut(s)	107
MluCI	AATT	1 cut(s)	202
MnlI	CCTC	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	161
NcoI	CCATGG	1 cut(s)	146
NdeII	GATC	3 cut(s)	40, 63, 175
NlaIII	CATG	1 cut(s)	150
NlaIV	GGNNCC	1 cut(s)	42
NmeAIII	GCCGAG	1 cut(s)	76
PfeI	GAWTC	1 cut(s)	197
PspN4I	GGNNCC	1 cut(s)	42
PspPI	GGNCC	1 cut(s)	143
PsuI	RGATCY	1 cut(s)	40
Sau3AI	GATC	3 cut(s)	40, 63, 175
Sau96I	GGNCC	1 cut(s)	143
SduI	GDGCHC	1 cut(s)	107
Sse9I	AATT	1 cut(s)	202
SspMI	CTAG	1 cut(s)	208
StyI	CCWWGG	1 cut(s)	146
TaqI	TCGA	2 cut(s)	6, 66
TasI	AATT	1 cut(s)	202
TfiI	GAWTC	1 cut(s)	197
XmiI	GTMKAC	1 cut(s)	167
XspI	CTAG	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.