Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000292

Physical Location & Seq

Genomic Coordinates Forward (+)

70467468 .. 70477527

Gene Structure 10060 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00050110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2433 bp

ATGCACTCCAACTGTTTTTGTGTGATTGTGAATCCTTTTAGACTTCTGAGAGCTCAGAATTTGCAAGGAACACTTCCGTCCGAGTTGGCAAGGCTTCCCTATCTCCAACAAATTTCTCTTGTTGGAAACCGTTTGACAGGTTCTATCCCCGTTGAGCTTGCAAATATTACCACCCTGAAAAGTTTGACCATGGATTTCAATTATTTCTCTGGAGGTCTTCCTTGGCAACTTGGAAATTTGCCCAGCATAGAAACACTTCGGATTATGGACAATTCCTTTTCTGGGAAGATACCAAATTATATTCAAAACTGGACAAATCTTAGGAAACTAGGGATTCAGGCTAGTGGTTTGACGGGACCAATACCTTCTGGAATTTCTCTATTGACGAATTTAACTGATCTGAGAATTACTGACTTGAATGGACCTGAATCATCCTTTCCTGTACTTGAGAATATGAAAAAAATTGAAGACACTATTCTTAACTGGAAATTTGCTGAATGGATCCGAGCCTCTGTGGATTCAGGGAGACAATGCAAATTTGAATCCTGGTTTGCTCTTATAGACATAAGACAGGCATTAACTGTGCATTATGTATTTTTGCTATGTGCAGTGATCTTTTCATATAACAATTTCACCCCAGAGCCTGTAGATTGTAAGCAAGCTGGCAGGAACTTGTTTGCAAGCTCTTCAAAGGGCAACAATTCAGCTGTTTCGTGTTTGAGCAATAAAACTACAACATGTTCAAAAAGTTGGTACTCTCTCAATATAAATTGTGGAGGAAGTGGAGTAACAGTTGATGGAAGAGCATATGATGAGGATACAGATGCAAGTGGACCTTCATTATATTACGAGAGCAGCACAAATTGGGTGTCAAGCAGCACTGGTTACTTCACTGATGATGACAGTTCTACAGACCACTTTACTTGGTCTACTAATTCACCTAGACTCTTGATTGCCAATGCTCAACTATACATGACTGCACGCCTTTCTCCCATCTCTCTAACTTATTATGGATTTTGTCTGGGAAATGGAAACTACACAGTACACCTCCATTTTGCAGAGATAATGTTTACAAATGGTCCAACATATAGAAGCTTAGGAAGGCGCATATTTGATGTTTACATTCAGGGCAAACGAGTGCTGCAGGATTTCAATATTGCTGATGAGGCAGGTGGGGTTGGTAAGGCAGTCATAAAAAACTATACTATTGCTGTAACTACTAATACCTTGGAGATCCGTTTCTTTTGGGCTGGGAAAGGAACCACAGGTATCCCTGTAAGAGGAGTTTATGGTCCTCTTATCTCCGCCATATCTGTATTTCCAGATTTTAAAGGTGTTGACCTGCAAACGGGTAGATTTAGCTTGAGAAAAATCAAAGATGCCACAGAAAACTTTGACATAGCCAACAAGATTGGAGAAGGTGGTTTTGGTCCTGTTTACAAGGGCCAACTATCAGATGGCACCATAATTGCTGTTAAGCAGCTTTCTGCCAAATCACAGCAAGGAAATCGTGAGTTTGTGAATGAGATTGGCATGATTTCCGCTCTGCAACACCCTCATCTTGTCAAGCTCTATGGATGCTGCATTGAAGGAAATCAGTTGTTGCTTGTCTATGAGTACATGGAAAACAACAGTGTTGGACGCGCTTTGTTTGGTGCAAAAGAAAGTCAGTTGAAGTTAGATTGGCCAACAAGGCACAGGATTTGTGTTGGTGTTGCAAAAGGTTTGGCTTTCCTTCATGAAGAATCACGGTTGAAGATCGTTCATAGAGACATCAAAGCTACTAATGTGCTGCTTGATAAAAATCTTTGCCCGAAGATATCTGACTTTGGCCTAGCCAAGCTTGGTGAAGATGATAGTACCCATATAAGCACTAGGATTGCTGGAACTTATGGATATATGGCACCTGAATATGCAATGAGGGGTTATCTAACTGATAAAGCGGATGTGTATAGTTTTGGAATTCTTGTATTGGAAATGGTCAGTGGAAAGCGCAACACAACTTACCATTCCAAGGGAGAGTGCTTCTCCATTCTTGATTGGGCACTTCTTCTGAAAGAGAAAGGAAGTTTGCTAGACCTAGTCGATCCAAGGTTGGGATCAGATTTTAACAAAGAAGACGTGATGATTACCATCAAGGTGGCTCTCCTTTGCTGTAATGTCTCTGCAGCACTTAGGCCTGCCATGTCTTCAGTGGTAAGCATGCTTGAAGGCAGGGCTCGTGTTGAGGAGTTAGTCTTTGATTCAAATGCCTCATTTCATGAGATCAGTGAAATGAGGAAACATTTTGAATCTAATTACTCATTGGAGACCATCGATGAGAGTACTCAGAGACAAACAATGTCAATCGAAGGGGTGTGCACTTCATCTACATCTGTTCAAGATCTCTATGCAATCAATCCTGATTCAGATTACTGGGAGAACAGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

810

Amino Acids

89.92

Weight (kDa)

6.21

Isoelectric Point (pI)

31.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	16 - 135	5e-07	Leucine-rich repeat region
Malectin	PF11721	253 - 437	9.6e-44	Malectin domain
PK_Tyr_Ser-Thr	PF07714	467 - 668	1.5e-46	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	467 - 668	5.5e-45	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53420 AT3G14840
fragaria_vesca	FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17851
malus_domestica	MD03G1246600.v1.1 MD06G1045200.v1.1 MD06G1045400.v1.1 MD11G1267800.v1.1 MD11G1267900.v1.1 MD11G1268100.v1.1 MD11G1268300.v1.1 MD11G1268500.v1.1 MD11G1268600.v1.1
prunus_persica	Prupe.4G157700_v2.0.a1 Prupe.4G157700_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1
pyrus_communis	pycom03g19540 pycom11g23600 pycom11g23630 pycom11g23690 pycom11g23720 pycom11g23730 pycom11g23740 pycom11g23750
rosa_chinensis	RchiOBHm_Chr0c40g0503411 RchiOBHm_Chr0c40g0503421 RchiOBHm_Chr5g0029631 RchiOBHm_Chr5g0029661 RchiOBHm_Chr5g0029701 RchiOBHm_Chr5g0029741 RchiOBHm_Chr5g0029771 RchiOBHm_Chr5g0029781 RchiOBHm_Chr5g0029811 RchiOBHm_Chr5g0029851 RchiOBHm_Chr5g0029871 RchiOBHm_Chr5g0029891 RchiOBHm_Chr7g0222221
rosa_laevigata	RLG00000017380 RLG00000032873 RLG00000033188 RLG00000033190 RLG00000033192 RLG00000033193 RLG00000033194 RLG00000033196 RLG00000033199 RLG00000033238
rosa_multiflora	Rmu_co8359987.1_g000001 Rmu_co8444909.1_g000001 Rmu_sc0001608.1_g000007 Rmu_sc0001608.1_g000009 Rmu_sc0001608.1_g000013 Rmu_sc0001608.1_g000018 Rmu_sc0001608.1_g000023 Rmu_sc0001608.1_g000040 Rmu_sc0003238.1_g000016 Rmu_sc0003368.1_g000026 Rmu_sc0003368.1_g000034 Rmu_sc0003368.1_g000043 Rmu_sc0003368.1_g000047 Rmu_sc0003368.1_g000052 Rmu_sc0003368.1_g000054 Rmu_sc0004963.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050080 Rroxscaffold_1G00050090 Rroxscaffold_1G00050110 Rroxscaffold_1G00050120 Rroxscaffold_1G00050180 Rroxscaffold_1G00050190 Rroxscaffold_1G00050220 Rroxscaffold_1G00050270 Rroxscaffold_1G00050300
rosa_rugosa	Rorug04G0065200 Rorug05G0114900 Rorug05G0115000 Rorug05G0115100 Rorug05G0120100 Rorug05G0238900
rosa_samantha	Rh5AG207800 Rh5AG208000 Rh5AG208300 Rh5AG208400 Rh5AG208800 Rh5AG294900 Rh5AG295000 Rh5AG295400 Rh5CG230400 Rh7AG347800
rosa_wichuraiana	Rw0G005370 Rw0G012460 Rw0G019060 Rw5G018910 Rw5G018920 Rw5G018930 Rw5G018940 Rw5G018960 Rw5G018970 Rw5G018980 Rw5G018990 Rw5G019000 Rw7G029840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1160
Acc36I	ACCTGC	2 cut(s)	1160, 1350
AccB1I	GGYRCC	2 cut(s)	1460, 1903
AccBSI	CCGCTC	1 cut(s)	1544
AccI	GTMKAC	1 cut(s)	929
AccII	CGCG	1 cut(s)	1644
AciI	CCGC	3 cut(s)	1305, 1542, 1943
AclWI	GGATC	5 cut(s)	496, 509, 1228, 2081, 2107
AcoI	YGGCCR	1 cut(s)	1685
AcsI	RAATTY	8 cut(s)	58, 111, 235, 372, 388, 488, 536, 1962
AcuI	CTGAAG	1 cut(s)	2175
AfaI	GTAC	6 cut(s)	444, 755, 1044, 1619, 1861, 2326
AfiI	CCNNNNNNNGG	5 cut(s)	282, 1280, 1348, 2014, 2096
AflIII	ACRYGT	1 cut(s)	737
AjiI	CACGTC	1 cut(s)	2122
AjnI	CCWGG	1 cut(s)	545
AjuI	GAANNNNNNNTTGG	2 cut(s)	1410, 1442
Alw21I	GWGCWC	2 cut(s)	55, 2363
Alw26I	GTCTC	5 cut(s)	520, 1764, 2167, 2303, 2326
Alw44I	GTGCAC	1 cut(s)	2359
AlwI	GGATC	5 cut(s)	496, 509, 1228, 2081, 2107
AlwNI	CAGNNNCTG	1 cut(s)	644
AoxI	GGCC	4 cut(s)	1444, 1685, 1831, 2177
ApaLI	GTGCAC	1 cut(s)	2359
ApeKI	GCWGC	7 cut(s)	855, 876, 1141, 1480, 1581, 1792, 2168
ApoI	RAATTY	8 cut(s)	58, 111, 235, 372, 388, 488, 536, 1962
ArsI	GACNNNNNNTTYG	2 cut(s)	854, 886
Asp700I	GAANNNNTTC	1 cut(s)	255
AspLEI	GCGC	3 cut(s)	1107, 1646, 1995
AspS9I	GGNCC	7 cut(s)	356, 422, 833, 1079, 1292, 1430, 1444
AsuHPI	GGTGA	3 cut(s)	625, 930, 1859
AvaII	GGWCC	6 cut(s)	356, 422, 833, 1079, 1292, 1430
BaeGI	GKGCMC	2 cut(s)	2047, 2363
BalI	TGGCCA	1 cut(s)	1687
BamHI	GGATCC	1 cut(s)	501
BanI	GGYRCC	2 cut(s)	1460, 1903
BanII	GRGCYC	2 cut(s)	55, 2221
BauI	CACGAG	1 cut(s)	2220
BbsI	GAAGAC	4 cut(s)	209, 474, 2124, 2181
Bbv12I	GWGCWC	2 cut(s)	55, 2363
BbvI	GCAGC	7 cut(s)	867, 888, 1128, 1492, 1568, 1779, 2180
BccI	CCATC	5 cut(s)	791, 1001, 1451, 2141, 2321
BcgI	CGANNNNNNTGC	2 cut(s)	1490, 1524
BciT130I	CCWGG	1 cut(s)	547
BciVI	GTATCC	2 cut(s)	811, 1280
BcoDI	GTCTC	5 cut(s)	520, 1764, 2167, 2303, 2326
BfaI	CTAG	7 cut(s)	329, 342, 942, 1835, 1875, 2075, 2081
BfmI	CTRYAG	4 cut(s)	645, 909, 1142, 2166
BfuAI	ACCTGC	2 cut(s)	1160, 1350
BfuI	GTATCC	2 cut(s)	811, 1280
BglI	GCCNNNNNGGC	1 cut(s)	1693
BglII	AGATCT	1 cut(s)	2383
BisI	GCNGC	7 cut(s)	856, 877, 1142, 1481, 1582, 1793, 2169
BlsI	GCNGC	7 cut(s)	857, 878, 1143, 1482, 1583, 1794, 2170
BmcAI	AGTACT	1 cut(s)	2326
Bme1390I	CCNGG	1 cut(s)	547
Bme18I	GGWCC	6 cut(s)	356, 422, 833, 1079, 1292, 1430
BmgBI	CACGTC	1 cut(s)	2122
BmgT120I	GGNCC	7 cut(s)	356, 422, 833, 1079, 1292, 1430, 1444
BmiI	GGNNCC	5 cut(s)	357, 503, 1261, 1462, 1905
BmrFI	CCNGG	1 cut(s)	547
BmrI	ACTGGG	1 cut(s)	2425
BmsI	GCATC	3 cut(s)	814, 1369, 1568
BmuI	ACTGGG	1 cut(s)	2425
BpiI	GAAGAC	4 cut(s)	209, 474, 2124, 2181
BplI	GAGNNNNNCTC	2 cut(s)	2012, 2044
BpmI	CTGGAG	1 cut(s)	231
Bpu10I	CCTNAGC	1 cut(s)	1096
BpuEI	CTTGAG	2 cut(s)	467, 1384
Bsa29I	ATCGAT	1 cut(s)	2316
BsaBI	GATNNNNATC	2 cut(s)	1803, 2132
BsaI	GGTCTC	1 cut(s)	2303
BsaJI	CCNNGG	5 cut(s)	189, 221, 1227, 2013, 2090
BsaXI	ACNNNNNCTCC	2 cut(s)	777, 807
Bsc4I	CCNNNNNNNGG	5 cut(s)	282, 1280, 1348, 2014, 2096
Bse1I	ACTGG	4 cut(s)	314, 488, 886, 2420
Bse3DI	GCAATG	1 cut(s)	1923
Bse8I	GATNNNNATC	2 cut(s)	1803, 2132
BseBI	CCWGG	1 cut(s)	547
BseCI	ATCGAT	1 cut(s)	2316
BseDI	CCNNGG	5 cut(s)	189, 221, 1227, 2013, 2090
BseGI	GGATG	3 cut(s)	431, 1583, 1951
BseJI	GATNNNNATC	2 cut(s)	1803, 2132
BseLI	CCNNNNNNNGG	5 cut(s)	282, 1280, 1348, 2014, 2096
BseMI	GCAATG	1 cut(s)	1923
BseMII	CTCAG	4 cut(s)	38, 68, 392, 2342
BseNI	ACTGG	4 cut(s)	314, 488, 886, 2420
BseRI	GAGGAG	2 cut(s)	1296, 2243
BseSI	GKGCMC	2 cut(s)	2047, 2363
BseXI	GCAGC	7 cut(s)	867, 888, 1128, 1492, 1568, 1779, 2180
BseYI	CCCAGC	2 cut(s)	242, 1250
BsgI	GTGCAG	2 cut(s)	627, 963
Bsh1236I	CGCG	1 cut(s)	1644
BshFI	GGCC	4 cut(s)	1446, 1687, 1833, 2179
BshNI	GGYRCC	2 cut(s)	1460, 1903
BshVI	ATCGAT	1 cut(s)	2316
BsiHKAI	GWGCWC	2 cut(s)	55, 2363
BslFI	GGGAC	1 cut(s)	369
BslI	CCNNNNNNNGG	5 cut(s)	282, 1280, 1348, 2014, 2096
BsmAI	GTCTC	5 cut(s)	520, 1764, 2167, 2303, 2326
BsmFI	GGGAC	1 cut(s)	369
BsnI	GGCC	4 cut(s)	1446, 1687, 1833, 2179
Bso31I	GGTCTC	1 cut(s)	2303
Bsp1286I	GDGCHC	4 cut(s)	55, 2047, 2221, 2363
Bsp143I	GATC	9 cut(s)	397, 501, 612, 1233, 1758, 2086, 2099, 2265, 2383
Bsp19I	CCATGG	1 cut(s)	189
BspACI	CCGC	3 cut(s)	1305, 1542, 1943
BspANI	GGCC	4 cut(s)	1446, 1687, 1833, 2179
BspCNI	CTCAG	4 cut(s)	39, 67, 393, 2341
BspDI	ATCGAT	1 cut(s)	2316
BspFNI	CGCG	1 cut(s)	1644
BspHI	TCATGA	2 cut(s)	1738, 2260
BspLI	GGNNCC	5 cut(s)	357, 503, 1261, 1462, 1905
BspMAI	CTGCAG	2 cut(s)	1146, 2170
BspMI	ACCTGC	2 cut(s)	1160, 1350
BspPI	GGATC	5 cut(s)	496, 509, 1228, 2081, 2107
BspQI	GCTCTTC	2 cut(s)	691, 796
BspT107I	GGYRCC	2 cut(s)	1460, 1903
BspTNI	GGTCTC	1 cut(s)	2303
BsrBI	CCGCTC	1 cut(s)	1544
BsrDI	GCAATG	1 cut(s)	1923
BsrI	ACTGG	4 cut(s)	314, 488, 886, 2420
BssECI	CCNNGG	5 cut(s)	189, 221, 1227, 2013, 2090
BssMI	GATC	9 cut(s)	397, 501, 612, 1233, 1758, 2086, 2099, 2265, 2383
BssSI	CACGAG	1 cut(s)	2220
BssT1I	CCWWGG	5 cut(s)	189, 221, 1227, 2013, 2090
Bst2BI	CACGAG	1 cut(s)	2220
Bst2UI	CCWGG	1 cut(s)	547
Bst4CI	ACNGT	8 cut(s)	14, 131, 583, 793, 905, 1042, 1634, 1752
Bst6I	CTCTTC	2 cut(s)	691, 796
BstC8I	GCNNGC	7 cut(s)	159, 660, 664, 682, 982, 2181, 2204
BstDEI	CTNAG	7 cut(s)	47, 54, 320, 401, 1096, 2174, 2328
BstDSI	CCRYGG	1 cut(s)	189
BstENI	CCTNNNNNAGG	1 cut(s)	1278
BstF5I	GGATG	3 cut(s)	431, 1583, 1951
BstFNI	CGCG	1 cut(s)	1644
BstHHI	GCGC	3 cut(s)	1107, 1646, 1995
BstKTI	GATC	9 cut(s)	400, 504, 615, 1236, 1761, 2089, 2102, 2268, 2386
BstMAI	GTCTC	5 cut(s)	520, 1764, 2167, 2303, 2326
BstMBI	GATC	9 cut(s)	397, 501, 612, 1233, 1758, 2086, 2099, 2265, 2383
BstMWI	GCNNNNNNNGC	2 cut(s)	1166, 1693
BstNI	CCWGG	1 cut(s)	547
BstNSI	RCATGY	2 cut(s)	741, 2206
BstSCI	CCNGG	1 cut(s)	545
BstSFI	CTRYAG	4 cut(s)	645, 909, 1142, 2166
BstSLI	GKGCMC	2 cut(s)	2047, 2363
BstUI	CGCG	1 cut(s)	1644
BstV1I	GCAGC	7 cut(s)	867, 888, 1128, 1492, 1568, 1779, 2180
BstV2I	GAAGAC	4 cut(s)	209, 474, 2124, 2181
BstX2I	RGATCY	3 cut(s)	501, 1233, 2383
BstXI	CCANNNNNNTGG	1 cut(s)	2140
BstYI	RGATCY	3 cut(s)	501, 1233, 2383
Bsu15I	ATCGAT	1 cut(s)	2316
BsuI	GTATCC	2 cut(s)	811, 1280
BsuRI	GGCC	4 cut(s)	1446, 1687, 1833, 2179
BsuTUI	ATCGAT	1 cut(s)	2316
BtgI	CCRYGG	1 cut(s)	189
BtrI	CACGTC	1 cut(s)	2122
BtsCI	GGATG	3 cut(s)	431, 1583, 1951
BtsI	GCAGTG	1 cut(s)	615
BtsIMutI	CAGTG	7 cut(s)	615, 879, 891, 1639, 1990, 2199, 2275
BveI	ACCTGC	2 cut(s)	1160, 1350
Cac8I	GCNNGC	7 cut(s)	159, 660, 664, 682, 982, 2181, 2204
CaiI	CAGNNNCTG	1 cut(s)	644
CciI	TCATGA	2 cut(s)	1738, 2260
CfoI	GCGC	3 cut(s)	1107, 1646, 1995
Cfr13I	GGNCC	7 cut(s)	356, 422, 833, 1079, 1292, 1430, 1444
ClaI	ATCGAT	1 cut(s)	2316
CseI	GACGC	1 cut(s)	1650
Csp6I	GTAC	6 cut(s)	443, 754, 1043, 1618, 1860, 2325
CspCI	CAANNNNNGTGG	2 cut(s)	905, 940
CviAII	CATG	9 cut(s)	190, 738, 973, 1534, 1621, 1739, 2185, 2203, 2261
CviQI	GTAC	6 cut(s)	443, 754, 1043, 1618, 1860, 2325
DdeI	CTNAG	7 cut(s)	47, 54, 320, 401, 1096, 2174, 2328
DpnI	GATC	9 cut(s)	399, 503, 614, 1235, 1760, 2088, 2101, 2267, 2385
DpnII	GATC	9 cut(s)	397, 501, 612, 1233, 1758, 2086, 2099, 2265, 2383
DraI	TTTAAA	1 cut(s)	1330
EaeI	YGGCCR	1 cut(s)	1685
Eam1104I	CTCTTC	2 cut(s)	691, 796
EarI	CTCTTC	2 cut(s)	691, 796
EciI	GGCGGA	1 cut(s)	1294
Ecl136II	GAGCTC	1 cut(s)	53
Eco130I	CCWWGG	5 cut(s)	189, 221, 1227, 2013, 2090
Eco147I	AGGCCT	1 cut(s)	2179
Eco24I	GRGCYC	2 cut(s)	55, 2221
Eco31I	GGTCTC	1 cut(s)	2303
Eco32I	GATATC	1 cut(s)	1821
Eco47I	GGWCC	6 cut(s)	356, 422, 833, 1079, 1292, 1430
Eco53kI	GAGCTC	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	2175
EcoICRI	GAGCTC	1 cut(s)	53
EcoNI	CCTNNNNNAGG	1 cut(s)	1278
EcoRI	GAATTC	1 cut(s)	1962
EcoRII	CCWGG	1 cut(s)	545
EcoRV	GATATC	1 cut(s)	1821
EcoT14I	CCWWGG	5 cut(s)	189, 221, 1227, 2013, 2090
EcoT38I	GRGCYC	2 cut(s)	55, 2221
ErhI	CCWWGG	5 cut(s)	189, 221, 1227, 2013, 2090
FaeI	CATG	9 cut(s)	193, 741, 976, 1537, 1624, 1742, 2188, 2206, 2264
FalI	AAGNNNNNCTT	4 cut(s)	57, 89, 820, 852
FaqI	GGGAC	1 cut(s)	369
FatI	CATG	9 cut(s)	189, 737, 972, 1533, 1620, 1738, 2184, 2202, 2260
FauNDI	CATATG	1 cut(s)	808
FblI	GTMKAC	1 cut(s)	929
Fnu4HI	GCNGC	7 cut(s)	856, 877, 1142, 1481, 1582, 1793, 2169
FokI	GGATG	3 cut(s)	418, 1590, 1958
FriOI	GRGCYC	2 cut(s)	55, 2221
Fsp4HI	GCNGC	7 cut(s)	856, 877, 1142, 1481, 1582, 1793, 2169
FspBI	CTAG	7 cut(s)	329, 342, 942, 1835, 1875, 2075, 2081
GlaI	GCGC	3 cut(s)	1106, 1645, 1994
GluI	GCNGC	7 cut(s)	856, 877, 1142, 1481, 1582, 1793, 2169
GsaI	CCCAGC	2 cut(s)	246, 1254
GsuI	CTGGAG	1 cut(s)	231
HaeIII	GGCC	4 cut(s)	1446, 1687, 1833, 2179
HgaI	GACGC	1 cut(s)	1650
HhaI	GCGC	3 cut(s)	1107, 1646, 1995
Hin1II	CATG	9 cut(s)	193, 741, 976, 1537, 1624, 1742, 2188, 2206, 2264
Hin6I	GCGC	3 cut(s)	1105, 1644, 1993
HinP1I	GCGC	3 cut(s)	1105, 1644, 1993
HincII	GTYRAC	1 cut(s)	1339
HindII	GTYRAC	1 cut(s)	1339
HindIII	AAGCTT	2 cut(s)	1093, 1841
HphI	GGTGA	3 cut(s)	625, 930, 1859
Hpy166II	GTNNAC	8 cut(s)	833, 930, 1045, 1071, 1120, 1339, 1438, 2361
Hpy8I	GTNNAC	8 cut(s)	833, 930, 1045, 1071, 1120, 1339, 1438, 2361
HpyAV	CCTTC	8 cut(s)	375, 846, 1095, 1412, 1583, 1745, 2204, 2345
HpyCH4III	ACNGT	8 cut(s)	14, 131, 583, 793, 905, 1042, 1634, 1752
HpyCH4IV	ACGT	1 cut(s)	2121
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1166, 1693
HpyF3I	CTNAG	7 cut(s)	47, 54, 320, 401, 1096, 2174, 2328
HpySE526I	ACGT	1 cut(s)	2121
Hsp92II	CATG	9 cut(s)	193, 741, 976, 1537, 1624, 1742, 2188, 2206, 2264
HspAI	GCGC	3 cut(s)	1105, 1644, 1993
Kzo9I	GATC	9 cut(s)	397, 501, 612, 1233, 1758, 2086, 2099, 2265, 2383
LguI	GCTCTTC	2 cut(s)	691, 796
Lsp1109I	GCAGC	7 cut(s)	867, 888, 1128, 1492, 1568, 1779, 2180
LweI	GCATC	3 cut(s)	814, 1369, 1568
MaeI	CTAG	7 cut(s)	329, 342, 942, 1835, 1875, 2075, 2081
MaeII	ACGT	1 cut(s)	2121
MaeIII	GTNAC	3 cut(s)	787, 884, 1213
MalI	GATC	9 cut(s)	399, 503, 614, 1235, 1760, 2088, 2101, 2267, 2385
MbiI	CCGCTC	1 cut(s)	1544
MboI	GATC	9 cut(s)	397, 501, 612, 1233, 1758, 2086, 2099, 2265, 2383
MflI	RGATCY	3 cut(s)	501, 1233, 2383
MhlI	GDGCHC	4 cut(s)	55, 2047, 2221, 2363
MlsI	TGGCCA	1 cut(s)	1687
MluNI	TGGCCA	1 cut(s)	1687
MlyI	GAGTC	1 cut(s)	939
MmeI	TCCRAC	5 cut(s)	33, 103, 130, 1106, 1618
Mox20I	TGGCCA	1 cut(s)	1687
MroXI	GAANNNNTTC	1 cut(s)	255
MscI	TGGCCA	1 cut(s)	1687
MseI	TTAA	6 cut(s)	392, 480, 578, 1329, 1476, 2109
MslI	CAYNNNNRTG	1 cut(s)	2138
Msp20I	TGGCCA	1 cut(s)	1687
MspA1I	CMGCKG	1 cut(s)	707
MspR9I	CCNGG	1 cut(s)	547
MvaI	CCWGG	1 cut(s)	547
MvnI	CGCG	1 cut(s)	1644
MwoI	GCNNNNNNNGC	2 cut(s)	1166, 1693
NcoI	CCATGG	1 cut(s)	189
NdeI	CATATG	1 cut(s)	808
NdeII	GATC	9 cut(s)	397, 501, 612, 1233, 1758, 2086, 2099, 2265, 2383
NlaIII	CATG	9 cut(s)	193, 741, 976, 1537, 1624, 1742, 2188, 2206, 2264
NlaIV	GGNNCC	5 cut(s)	357, 503, 1261, 1462, 1905
NspI	RCATGY	2 cut(s)	741, 2206
PaeI	GCATGC	1 cut(s)	2206
PagI	TCATGA	2 cut(s)	1738, 2260
PaqCI	CACCTGC	1 cut(s)	1160
PceI	AGGCCT	1 cut(s)	2179
PciI	ACATGT	1 cut(s)	737
PciSI	GCTCTTC	2 cut(s)	691, 796
PdmI	GAANNNNTTC	1 cut(s)	255
PfeI	GAWTC	9 cut(s)	31, 334, 428, 518, 542, 1745, 2243, 2291, 2405
PflFI	GACNNNGTC	1 cut(s)	2081
PkrI	GCNGC	7 cut(s)	857, 878, 1143, 1482, 1583, 1794, 2170
PleI	GAGTC	1 cut(s)	939
PpsI	GAGTC	1 cut(s)	939
PscI	ACATGT	1 cut(s)	737
Psp124BI	GAGCTC	1 cut(s)	55
Psp6I	CCWGG	1 cut(s)	545
PspFI	CCCAGC	2 cut(s)	242, 1250
PspGI	CCWGG	1 cut(s)	545
PspN4I	GGNNCC	5 cut(s)	357, 503, 1261, 1462, 1905
PspPI	GGNCC	7 cut(s)	356, 422, 833, 1079, 1292, 1430, 1444
PstI	CTGCAG	2 cut(s)	1146, 2170
PstNI	CAGNNNCTG	1 cut(s)	644
PsuI	RGATCY	3 cut(s)	501, 1233, 2383
PsyI	GACNNNGTC	1 cut(s)	2081
PvuII	CAGCTG	1 cut(s)	707
RsaI	GTAC	6 cut(s)	444, 755, 1044, 1619, 1861, 2326
RsaNI	GTAC	6 cut(s)	443, 754, 1043, 1618, 1860, 2325
RseI	CAYNNNNRTG	1 cut(s)	2138
SacI	GAGCTC	1 cut(s)	55
SapI	GCTCTTC	2 cut(s)	691, 796
SaqAI	TTAA	6 cut(s)	392, 480, 578, 1329, 1476, 2109
SatI	GCNGC	7 cut(s)	856, 877, 1142, 1481, 1582, 1793, 2169
Sau3AI	GATC	9 cut(s)	397, 501, 612, 1233, 1758, 2086, 2099, 2265, 2383
Sau96I	GGNCC	7 cut(s)	356, 422, 833, 1079, 1292, 1430, 1444
ScaI	AGTACT	1 cut(s)	2326
SchI	GAGTC	1 cut(s)	939
ScrFI	CCNGG	1 cut(s)	547
SduI	GDGCHC	4 cut(s)	55, 2047, 2221, 2363
SfaNI	GCATC	3 cut(s)	814, 1369, 1568
SfcI	CTRYAG	4 cut(s)	645, 909, 1142, 2166
SinI	GGWCC	6 cut(s)	356, 422, 833, 1079, 1292, 1430
SmiMI	CAYNNNNRTG	1 cut(s)	2138
SmlI	CTYRAG	2 cut(s)	446, 1363
SmoI	CTYRAG	2 cut(s)	446, 1363
SphI	GCATGC	1 cut(s)	2206
SseBI	AGGCCT	1 cut(s)	2179
SsiI	CCGC	3 cut(s)	1305, 1542, 1943
SspI	AATATT	2 cut(s)	166, 1156
SspMI	CTAG	7 cut(s)	329, 342, 942, 1835, 1875, 2075, 2081
SstI	GAGCTC	1 cut(s)	55
StuI	AGGCCT	1 cut(s)	2179
StyD4I	CCNGG	1 cut(s)	545
StyI	CCWWGG	5 cut(s)	189, 221, 1227, 2013, 2090
TaaI	ACNGT	8 cut(s)	14, 131, 583, 793, 905, 1042, 1634, 1752
TaiI	ACGT	1 cut(s)	2124
TaqI	TCGA	3 cut(s)	2085, 2316, 2349
TatI	WGTACW	4 cut(s)	442, 1042, 1617, 2324
TfiI	GAWTC	9 cut(s)	31, 334, 428, 518, 542, 1745, 2243, 2291, 2405
Tru1I	TTAA	6 cut(s)	392, 480, 578, 1329, 1476, 2109
Tru9I	TTAA	6 cut(s)	392, 480, 578, 1329, 1476, 2109
TscAI	CASTG	7 cut(s)	615, 886, 898, 1639, 1990, 2199, 2275
TseI	GCWGC	7 cut(s)	855, 876, 1141, 1480, 1581, 1792, 2168
TspDTI	ATGAA	8 cut(s)	470, 609, 828, 1727, 1754, 1755, 2249, 2355
TspGWI	ACGGA	2 cut(s)	66, 1226
TspRI	CASTG	7 cut(s)	615, 886, 898, 1639, 1990, 2199, 2275
Tth111I	GACNNNGTC	1 cut(s)	2081
VneI	GTGCAC	1 cut(s)	2359
VpaK11BI	GGWCC	6 cut(s)	356, 422, 833, 1079, 1292, 1430
XagI	CCTNNNNNAGG	1 cut(s)	1278
XapI	RAATTY	8 cut(s)	58, 111, 235, 372, 388, 488, 536, 1962
XceI	RCATGY	2 cut(s)	741, 2206
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1454, 2191
XmiI	GTMKAC	1 cut(s)	929
XmnI	GAANNNNTTC	1 cut(s)	255
XspI	CTAG	7 cut(s)	329, 342, 942, 1835, 1875, 2075, 2081
ZrmI	AGTACT	1 cut(s)	2326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.