Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0000292

Physical Location & Seq

Genomic Coordinates Forward (+)

6146790 .. 6152626

Gene Structure 5837 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1045400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGAGCACATCTTCTCAAATCGGAAAGGAAATTGATGAACCTAGTGGATCCAAGATTTGTTTTAACTATCTTAGTCAAATGCAATGCATCCTGACAAATGAAAATATGATAGCTATTAAGCAACTTTCTTCCAAATCAAAGCAAGGAAATTGTGAATTTGTAAATGAGATATGTATCATTTTTGCTTTGCAACACCCACATCTTGTAAACCTATACGGATGTTGTATTAAAGGAAATCAATTATACCTTGTTTACAAGTACATGGAAAACAATAATGTTTCCCATGCTTTATTTAGCACATGTTCTCAAATTGGAAAGGAAATTGATGAACCTAGTGGATCCAAGTCAAATGCATGCATCCTAGCAGATGGAACCATGATAGCTGTTAAGCAGATTTCTTCCAAATCAAAGCAAGGAAATCGTGAATTTGTGAATGAGAAAGGCATGATTTCTGCTTTGCAATACTCTCATCTTGTAAACCTATATGGATGTTGTATTGAAGGAAGTCAAATATATCTTGTCTATGAGTTTATGGAAAGTAATAACGTTTCTTATGCTTTGTTTGATATATGTTGGTATTGCAAAATCTTTGGTTACCTTCATAAGGAATCAAGCATGAAGATTATTCATAGAGATATCAAGACTACTAATGTGTTGCTTGATAGACATCTTAACCCAAAGATATCAGACTCTGGATTGGCCAAACTTGCCAAAGATGATAAAACACATATAAGCACCTATATAGCTAGAACTTTGCACATGTTCTCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

258

Amino Acids

29.0

Weight (kDa)

7.92

Isoelectric Point (pI)

33.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	29 - 97	6e-08	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	33 - 99	3.6e-11	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	117 - 242	4.9e-16	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	124 - 243	6.8e-17	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53420 AT3G14840
fragaria_vesca	FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17851
malus_domestica	MD03G1246600.v1.1 MD06G1045200.v1.1 MD06G1045400.v1.1 MD11G1267800.v1.1 MD11G1267900.v1.1 MD11G1268100.v1.1 MD11G1268300.v1.1 MD11G1268500.v1.1 MD11G1268600.v1.1
prunus_persica	Prupe.4G157700_v2.0.a1 Prupe.4G157700_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1
pyrus_communis	pycom03g19540 pycom11g23600 pycom11g23630 pycom11g23690 pycom11g23720 pycom11g23730 pycom11g23740 pycom11g23750
rosa_chinensis	RchiOBHm_Chr0c40g0503411 RchiOBHm_Chr0c40g0503421 RchiOBHm_Chr5g0029631 RchiOBHm_Chr5g0029661 RchiOBHm_Chr5g0029701 RchiOBHm_Chr5g0029741 RchiOBHm_Chr5g0029771 RchiOBHm_Chr5g0029781 RchiOBHm_Chr5g0029811 RchiOBHm_Chr5g0029851 RchiOBHm_Chr5g0029871 RchiOBHm_Chr5g0029891 RchiOBHm_Chr7g0222221
rosa_laevigata	RLG00000017380 RLG00000032873 RLG00000033188 RLG00000033190 RLG00000033192 RLG00000033193 RLG00000033194 RLG00000033196 RLG00000033199 RLG00000033238
rosa_multiflora	Rmu_co8359987.1_g000001 Rmu_co8444909.1_g000001 Rmu_sc0001608.1_g000007 Rmu_sc0001608.1_g000009 Rmu_sc0001608.1_g000013 Rmu_sc0001608.1_g000018 Rmu_sc0001608.1_g000023 Rmu_sc0001608.1_g000040 Rmu_sc0003238.1_g000016 Rmu_sc0003368.1_g000026 Rmu_sc0003368.1_g000034 Rmu_sc0003368.1_g000043 Rmu_sc0003368.1_g000047 Rmu_sc0003368.1_g000052 Rmu_sc0003368.1_g000054 Rmu_sc0004963.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050080 Rroxscaffold_1G00050090 Rroxscaffold_1G00050110 Rroxscaffold_1G00050120 Rroxscaffold_1G00050180 Rroxscaffold_1G00050190 Rroxscaffold_1G00050220 Rroxscaffold_1G00050270 Rroxscaffold_1G00050300
rosa_rugosa	Rorug04G0065200 Rorug05G0114900 Rorug05G0115000 Rorug05G0115100 Rorug05G0120100 Rorug05G0238900
rosa_samantha	Rh5AG207800 Rh5AG208000 Rh5AG208300 Rh5AG208400 Rh5AG208800 Rh5AG294900 Rh5AG295000 Rh5AG295400 Rh5CG230400 Rh7AG347800
rosa_wichuraiana	Rw0G005370 Rw0G012460 Rw0G019060 Rw5G018910 Rw5G018920 Rw5G018930 Rw5G018940 Rw5G018960 Rw5G018970 Rw5G018980 Rw5G018990 Rw5G019000 Rw7G029840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	546
AclWI	GGATC	4 cut(s)	42, 55, 333, 346
AcoI	YGGCCR	1 cut(s)	699
AcsI	RAATTY	2 cut(s)	155, 425
AfaI	GTAC	1 cut(s)	260
AfiI	CCNNNNNNNGG	1 cut(s)	604
AflIII	ACRYGT	2 cut(s)	299, 759
AgsI	TTSAA	1 cut(s)	500
AluBI	AGCT	3 cut(s)	113, 383, 746
AluI	AGCT	3 cut(s)	113, 383, 746
Alw21I	GWGCWC	1 cut(s)	8
AlwI	GGATC	4 cut(s)	42, 55, 333, 346
AlwNI	CAGNNNCTG	1 cut(s)	692
AoxI	GGCC	1 cut(s)	699
ApoI	RAATTY	2 cut(s)	155, 425
BalI	TGGCCA	1 cut(s)	701
BamHI	GGATCC	2 cut(s)	47, 338
Bbv12I	GWGCWC	1 cut(s)	8
BccI	CCATC	1 cut(s)	362
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BfaI	CTAG	4 cut(s)	42, 333, 362, 747
BmiI	GGNNCC	3 cut(s)	49, 340, 373
BmsI	GCATC	2 cut(s)	96, 366
BsaBI	GATNNNNATC	2 cut(s)	173, 666
Bsc4I	CCNNNNNNNGG	1 cut(s)	604
Bse3DI	GCAATG	1 cut(s)	89
Bse8I	GATNNNNATC	2 cut(s)	173, 666
BseGI	GGATG	4 cut(s)	87, 224, 357, 494
BseJI	GATNNNNATC	2 cut(s)	173, 666
BseLI	CCNNNNNNNGG	1 cut(s)	604
BseMI	GCAATG	1 cut(s)	89
BshFI	GGCC	1 cut(s)	701
BsiHKAI	GWGCWC	1 cut(s)	8
BslI	CCNNNNNNNGG	1 cut(s)	604
BsnI	GGCC	1 cut(s)	701
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	47, 338
BspANI	GGCC	1 cut(s)	701
BspLI	GGNNCC	3 cut(s)	49, 340, 373
BspPI	GGATC	4 cut(s)	42, 55, 333, 346
BsrDI	GCAATG	1 cut(s)	89
BssMI	GATC	2 cut(s)	47, 338
BstC8I	GCNNGC	1 cut(s)	355
BstDEI	CTNAG	1 cut(s)	71
BstEII	GGTNACC	1 cut(s)	593
BstENI	CCTNNNNNAGG	1 cut(s)	602
BstF5I	GGATG	4 cut(s)	87, 224, 357, 494
BstKTI	GATC	2 cut(s)	50, 341
BstMBI	GATC	2 cut(s)	47, 338
BstMWI	GCNNNNNNNGC	1 cut(s)	707
BstNSI	RCATGY	3 cut(s)	303, 357, 763
BstPI	GGTNACC	1 cut(s)	593
BstX2I	RGATCY	2 cut(s)	47, 338
BstYI	RGATCY	2 cut(s)	47, 338
BsuRI	GGCC	1 cut(s)	701
BtsCI	GGATG	4 cut(s)	87, 224, 357, 494
Cac8I	GCNNGC	1 cut(s)	355
CaiI	CAGNNNCTG	1 cut(s)	692
Csp6I	GTAC	1 cut(s)	259
CviAII	CATG	8 cut(s)	262, 284, 300, 354, 376, 445, 616, 760
CviJI	RGCY	4 cut(s)	113, 383, 701, 746
CviKI_1	RGCY	4 cut(s)	113, 383, 701, 746
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	1 cut(s)	71
DpnI	GATC	2 cut(s)	49, 340
DpnII	GATC	2 cut(s)	47, 338
EaeI	YGGCCR	1 cut(s)	699
Eco32I	GATATC	2 cut(s)	637, 684
Eco91I	GGTNACC	1 cut(s)	593
EcoNI	CCTNNNNNAGG	1 cut(s)	602
EcoO65I	GGTNACC	1 cut(s)	593
EcoRV	GATATC	2 cut(s)	637, 684
EcoT22I	ATGCAT	3 cut(s)	89, 355, 359
FaeI	CATG	8 cut(s)	265, 287, 303, 357, 379, 448, 619, 763
FatI	CATG	8 cut(s)	261, 283, 299, 353, 375, 444, 615, 759
FokI	GGATG	4 cut(s)	74, 231, 344, 501
FspBI	CTAG	4 cut(s)	42, 333, 362, 747
HaeIII	GGCC	1 cut(s)	701
Hin1II	CATG	8 cut(s)	265, 287, 303, 357, 379, 448, 619, 763
HinfI	GANTC	2 cut(s)	608, 689
Hpy166II	GTNNAC	3 cut(s)	208, 253, 478
Hpy188I	TCNGA	2 cut(s)	23, 688
Hpy188III	TCNNGA	4 cut(s)	91, 422, 640, 693
Hpy8I	GTNNAC	3 cut(s)	208, 253, 478
HpyAV	CCTTC	2 cut(s)	494, 608
HpyCH4IV	ACGT	1 cut(s)	546
HpyCH4V	TGCA	8 cut(s)	82, 87, 190, 353, 357, 460, 582, 757
HpyF10VI	GCNNNNNNNGC	1 cut(s)	707
HpyF3I	CTNAG	1 cut(s)	71
HpySE526I	ACGT	1 cut(s)	546
Hsp92II	CATG	8 cut(s)	265, 287, 303, 357, 379, 448, 619, 763
Kzo9I	GATC	2 cut(s)	47, 338
LpnPI	CCDG	2 cut(s)	104, 678
LweI	GCATC	2 cut(s)	96, 366
MaeI	CTAG	4 cut(s)	42, 333, 362, 747
MaeII	ACGT	1 cut(s)	546
MaeIII	GTNAC	1 cut(s)	593
MalI	GATC	2 cut(s)	49, 340
MboI	GATC	2 cut(s)	47, 338
MboII	GAAGA	4 cut(s)	3, 120, 390, 631
MflI	RGATCY	2 cut(s)	47, 338
MhlI	GDGCHC	1 cut(s)	8
MlsI	TGGCCA	1 cut(s)	701
MluCI	AATT	8 cut(s)	30, 148, 155, 239, 309, 321, 425, 769
MluNI	TGGCCA	1 cut(s)	701
MlyI	GAGTC	1 cut(s)	683
Mox20I	TGGCCA	1 cut(s)	701
Mph1103I	ATGCAT	3 cut(s)	89, 355, 359
MscI	TGGCCA	1 cut(s)	701
MseI	TTAA	5 cut(s)	63, 117, 228, 387, 672
Msp20I	TGGCCA	1 cut(s)	701
MwoI	GCNNNNNNNGC	1 cut(s)	707
NdeII	GATC	2 cut(s)	47, 338
NlaIII	CATG	8 cut(s)	265, 287, 303, 357, 379, 448, 619, 763
NlaIV	GGNNCC	3 cut(s)	49, 340, 373
NsiI	ATGCAT	3 cut(s)	89, 355, 359
NspI	RCATGY	3 cut(s)	303, 357, 763
PaeI	GCATGC	1 cut(s)	357
PciI	ACATGT	2 cut(s)	299, 759
PfeI	GAWTC	1 cut(s)	608
PleI	GAGTC	1 cut(s)	683
PpsI	GAGTC	1 cut(s)	683
PscI	ACATGT	2 cut(s)	299, 759
Psp1406I	AACGTT	1 cut(s)	546
PspEI	GGTNACC	1 cut(s)	593
PspN4I	GGNNCC	3 cut(s)	49, 340, 373
PstNI	CAGNNNCTG	1 cut(s)	692
PsuI	RGATCY	2 cut(s)	47, 338
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
SaqAI	TTAA	5 cut(s)	63, 117, 228, 387, 672
Sau3AI	GATC	2 cut(s)	47, 338
SchI	GAGTC	1 cut(s)	683
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	2 cut(s)	96, 366
SphI	GCATGC	1 cut(s)	357
Sse9I	AATT	8 cut(s)	30, 148, 155, 239, 309, 321, 425, 769
SspMI	CTAG	4 cut(s)	42, 333, 362, 747
TaiI	ACGT	1 cut(s)	549
TasI	AATT	8 cut(s)	30, 148, 155, 239, 309, 321, 425, 769
TatI	WGTACW	1 cut(s)	258
TfiI	GAWTC	1 cut(s)	608
Tru1I	TTAA	5 cut(s)	63, 117, 228, 387, 672
Tru9I	TTAA	5 cut(s)	63, 117, 228, 387, 672
TspDTI	ATGAA	6 cut(s)	51, 114, 342, 590, 617, 632
TspGWI	ACGGA	1 cut(s)	231
XagI	CCTNNNNNAGG	1 cut(s)	602
XapI	RAATTY	2 cut(s)	155, 425
XceI	RCATGY	3 cut(s)	303, 357, 763
XspI	CTAG	4 cut(s)	42, 333, 362, 747
Zsp2I	ATGCAT	3 cut(s)	89, 355, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.