Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000292

Physical Location & Seq

Genomic Coordinates Reverse (-)

24739949 .. 24741184

Gene Structure 1236 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033238

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGTGGCTTTTGTTAAATGCTCTTTACAAAAGGATATTGATCATGTTTCTACTATTCAGGGCCTTCTATCAAATGGCACCTCAGTTGCTATTAAGAAGCTTTCTACCCAATCGAAGCAAGGGAATCGGGAGTTTCTCAACGAAATAGGCATAATTTCTGCTCTGCGACACCCTAATCTTGAGCTTTTTGGCTGCTGTGTTGAGGGCGATCAATTGGTACTAGTGTACGAGTACATGGAAAAGAATAGTCTTGCACGCACTTTGTATGGCCCGGAAGAGAGTCGGTTGGATTTGGATTGGCCAACCAGACAGAAAATTTGTCTTGGTATAGCGAGAGGTTTGGCGTACCTCCATGAGGAATCAAGGATGAAGATAATCCACAGAGATATCAAGGCTACAAACGTGCTTCTTGGTGAAGACTTCCTTCCCAAAATATCAGATTTTGGGTTGGCAAAGCTTGAGGAGATAAGACTCACATGTCTACAAAGACCATGGGTATATGCCCCAGAATATGCACTGCGTGGCCATCTCTCTGATAAAGCTGATGTTTATAGTTTCGGGATTGTCGTGCTCGAAATTGCACATCGTCTTTGGGAAGAACAGAAATTGTTGGAAGTAGTGGATGCGAGGTTGGGGGGAGAATTTGATAGTGTTGAGATGATCATGACGATCAAAGTGGCTCTCGTTTGCTCGCACGAGATTGCAGCCAATAGGCCTAGCATGTCTTTAGTAGTGAACATGCTTGTGGGCGACGCACTAGTTCCTGAATTCGTTTCCACTACATCAAATAATGAGGACAAACCCTTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

271

Amino Acids

30.3

Weight (kDa)

5.45

Isoelectric Point (pI)

32.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	24 - 199	5.2e-31	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	25 - 246	1.2e-35	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53420 AT3G14840
fragaria_vesca	FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17851
malus_domestica	MD03G1246600.v1.1 MD06G1045200.v1.1 MD06G1045400.v1.1 MD11G1267800.v1.1 MD11G1267900.v1.1 MD11G1268100.v1.1 MD11G1268300.v1.1 MD11G1268500.v1.1 MD11G1268600.v1.1
prunus_persica	Prupe.4G157700_v2.0.a1 Prupe.4G157700_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1
pyrus_communis	pycom03g19540 pycom11g23600 pycom11g23630 pycom11g23690 pycom11g23720 pycom11g23730 pycom11g23740 pycom11g23750
rosa_chinensis	RchiOBHm_Chr0c40g0503411 RchiOBHm_Chr0c40g0503421 RchiOBHm_Chr5g0029631 RchiOBHm_Chr5g0029661 RchiOBHm_Chr5g0029701 RchiOBHm_Chr5g0029741 RchiOBHm_Chr5g0029771 RchiOBHm_Chr5g0029781 RchiOBHm_Chr5g0029811 RchiOBHm_Chr5g0029851 RchiOBHm_Chr5g0029871 RchiOBHm_Chr5g0029891 RchiOBHm_Chr7g0222221
rosa_laevigata	RLG00000017380 RLG00000032873 RLG00000033188 RLG00000033190 RLG00000033192 RLG00000033193 RLG00000033194 RLG00000033196 RLG00000033199 RLG00000033238
rosa_multiflora	Rmu_co8359987.1_g000001 Rmu_co8444909.1_g000001 Rmu_sc0001608.1_g000007 Rmu_sc0001608.1_g000009 Rmu_sc0001608.1_g000013 Rmu_sc0001608.1_g000018 Rmu_sc0001608.1_g000023 Rmu_sc0001608.1_g000040 Rmu_sc0003238.1_g000016 Rmu_sc0003368.1_g000026 Rmu_sc0003368.1_g000034 Rmu_sc0003368.1_g000043 Rmu_sc0003368.1_g000047 Rmu_sc0003368.1_g000052 Rmu_sc0003368.1_g000054 Rmu_sc0004963.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050080 Rroxscaffold_1G00050090 Rroxscaffold_1G00050110 Rroxscaffold_1G00050120 Rroxscaffold_1G00050180 Rroxscaffold_1G00050190 Rroxscaffold_1G00050220 Rroxscaffold_1G00050270 Rroxscaffold_1G00050300
rosa_rugosa	Rorug04G0065200 Rorug05G0114900 Rorug05G0115000 Rorug05G0115100 Rorug05G0120100 Rorug05G0238900
rosa_samantha	Rh5AG207800 Rh5AG208000 Rh5AG208300 Rh5AG208400 Rh5AG208800 Rh5AG294900 Rh5AG295000 Rh5AG295400 Rh5CG230400 Rh7AG347800
rosa_wichuraiana	Rw0G005370 Rw0G012460 Rw0G019060 Rw5G018910 Rw5G018920 Rw5G018930 Rw5G018940 Rw5G018960 Rw5G018970 Rw5G018980 Rw5G018990 Rw5G019000 Rw7G029840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	477
AccB1I	GGYRCC	1 cut(s)	77
AccI	GTMKAC	1 cut(s)	481
AcoI	YGGCCR	2 cut(s)	299, 523
AcsI	RAATTY	3 cut(s)	315, 641, 767
AdeI	CACNNNGTG	1 cut(s)	521
AfaI	GTAC	4 cut(s)	219, 227, 233, 347
AfiI	CCNNNNNNNGG	1 cut(s)	355
AflIII	ACRYGT	1 cut(s)	476
AhlI	ACTAGT	2 cut(s)	220, 757
AluBI	AGCT	4 cut(s)	100, 184, 457, 542
AluI	AGCT	4 cut(s)	100, 184, 457, 542
Alw21I	GWGCWC	1 cut(s)	573
AoxI	GGCC	5 cut(s)	61, 268, 299, 523, 713
ApeKI	GCWGC	2 cut(s)	192, 704
ApoI	RAATTY	3 cut(s)	315, 641, 767
ArsI	GACNNNNNNTTYG	2 cut(s)	300, 332
AspS9I	GGNCC	2 cut(s)	61, 269
AsuC2I	CCSGG	1 cut(s)	272
AsuHPI	GGTGA	1 cut(s)	425
BaeI	ACNNNNGTAYC	2 cut(s)	209, 242
BalI	TGGCCA	2 cut(s)	301, 525
BanI	GGYRCC	1 cut(s)	77
BauI	CACGAG	1 cut(s)	695
BbsI	GAAGAC	1 cut(s)	423
Bbv12I	GWGCWC	1 cut(s)	573
BbvI	GCAGC	2 cut(s)	179, 716
BccI	CCATC	1 cut(s)	534
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BclI	TGATCA	2 cut(s)	40, 660
BcnI	CCSGG	1 cut(s)	272
BcuI	ACTAGT	2 cut(s)	220, 757
BfaI	CTAG	3 cut(s)	221, 717, 758
BisI	GCNGC	2 cut(s)	193, 705
BlsI	GCNGC	2 cut(s)	194, 706
Bme1390I	CCNGG	1 cut(s)	272
BmgT120I	GGNCC	2 cut(s)	61, 269
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	1 cut(s)	272
BmsI	GCATC	1 cut(s)	613
BpiI	GAAGAC	1 cut(s)	423
BpuEI	CTTGAG	2 cut(s)	200, 479
BpuMI	CCSGG	1 cut(s)	272
BsaBI	GATNNNNATC	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	491, 804
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse8I	GATNNNNATC	1 cut(s)	39
BseDI	CCNNGG	2 cut(s)	491, 804
BseGI	GGATG	2 cut(s)	372, 628
BseJI	GATNNNNATC	1 cut(s)	39
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseMII	CTCAG	1 cut(s)	96
BseRI	GAGGAG	1 cut(s)	476
BseXI	GCAGC	2 cut(s)	179, 716
BshFI	GGCC	5 cut(s)	63, 270, 301, 525, 715
BshNI	GGYRCC	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	573
BsiSI	CCGG	1 cut(s)	272
BslI	CCNNNNNNNGG	1 cut(s)	355
BsnI	GGCC	5 cut(s)	63, 270, 301, 525, 715
Bsp1286I	GDGCHC	1 cut(s)	573
Bsp143I	GATC	4 cut(s)	40, 208, 660, 669
Bsp19I	CCATGG	1 cut(s)	491
BspANI	GGCC	5 cut(s)	63, 270, 301, 525, 715
BspCNI	CTCAG	1 cut(s)	95
BspHI	TCATGA	1 cut(s)	663
BspLI	GGNNCC	1 cut(s)	79
BspT107I	GGYRCC	1 cut(s)	77
BssECI	CCNNGG	2 cut(s)	491, 804
BssMI	GATC	4 cut(s)	40, 208, 660, 669
BssSI	CACGAG	1 cut(s)	695
BssT1I	CCWWGG	2 cut(s)	491, 804
Bst2BI	CACGAG	1 cut(s)	695
Bst6I	CTCTTC	1 cut(s)	270
BstC8I	GCNNGC	2 cut(s)	256, 692
BstDEI	CTNAG	1 cut(s)	82
BstDSI	CCRYGG	1 cut(s)	491
BstENI	CCTNNNNNAGG	1 cut(s)	353
BstF5I	GGATG	2 cut(s)	372, 628
BstKTI	GATC	4 cut(s)	43, 211, 663, 672
BstMBI	GATC	4 cut(s)	40, 208, 660, 669
BstNSI	RCATGY	3 cut(s)	480, 724, 742
BstSCI	CCNGG	1 cut(s)	270
BstV1I	GCAGC	2 cut(s)	179, 716
BstV2I	GAAGAC	1 cut(s)	423
BsuRI	GGCC	5 cut(s)	63, 270, 301, 525, 715
BtgI	CCRYGG	1 cut(s)	491
BtsCI	GGATG	2 cut(s)	372, 628
BtsI	GCAGTG	1 cut(s)	515
BtsIMutI	CAGTG	1 cut(s)	515
Cac8I	GCNNGC	2 cut(s)	256, 692
CciI	TCATGA	1 cut(s)	663
Cfr13I	GGNCC	2 cut(s)	61, 269
CseI	GACGC	1 cut(s)	761
Csp6I	GTAC	4 cut(s)	218, 226, 232, 346
CviAII	CATG	8 cut(s)	44, 235, 353, 477, 492, 664, 721, 739
CviQI	GTAC	4 cut(s)	218, 226, 232, 346
DdeI	CTNAG	1 cut(s)	82
DpnI	GATC	4 cut(s)	42, 210, 662, 671
DpnII	GATC	4 cut(s)	40, 208, 660, 669
DraIII	CACNNNGTG	1 cut(s)	521
DrdI	GACNNNNNNGTC	1 cut(s)	477
DseDI	GACNNNNNNGTC	1 cut(s)	477
EaeI	YGGCCR	2 cut(s)	299, 523
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
Eco130I	CCWWGG	2 cut(s)	491, 804
Eco147I	AGGCCT	1 cut(s)	715
Eco32I	GATATC	1 cut(s)	388
EcoNI	CCTNNNNNAGG	1 cut(s)	353
EcoO109I	RGGNCCY	1 cut(s)	61
EcoRI	GAATTC	1 cut(s)	767
EcoRV	GATATC	1 cut(s)	388
EcoT14I	CCWWGG	2 cut(s)	491, 804
ErhI	CCWWGG	2 cut(s)	491, 804
FaeI	CATG	8 cut(s)	47, 238, 356, 480, 495, 667, 724, 742
FalI	AAGNNNNNCTT	2 cut(s)	408, 440
FatI	CATG	8 cut(s)	43, 234, 352, 476, 491, 663, 720, 738
FbaI	TGATCA	2 cut(s)	40, 660
FblI	GTMKAC	1 cut(s)	481
Fnu4HI	GCNGC	2 cut(s)	193, 705
FokI	GGATG	2 cut(s)	379, 635
Fsp4HI	GCNGC	2 cut(s)	193, 705
FspBI	CTAG	3 cut(s)	221, 717, 758
GluI	GCNGC	2 cut(s)	193, 705
HaeIII	GGCC	5 cut(s)	63, 270, 301, 525, 715
HapII	CCGG	1 cut(s)	272
HgaI	GACGC	1 cut(s)	761
Hin1II	CATG	8 cut(s)	47, 238, 356, 480, 495, 667, 724, 742
HindIII	AAGCTT	2 cut(s)	98, 455
HinfI	GANTC	4 cut(s)	124, 280, 359, 471
HpaII	CCGG	1 cut(s)	272
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	3 cut(s)	226, 482, 736
Hpy188I	TCNGA	2 cut(s)	439, 535
Hpy188III	TCNNGA	5 cut(s)	128, 179, 559, 664, 764
Hpy8I	GTNNAC	3 cut(s)	226, 482, 736
Hpy99I	CGWCG	1 cut(s)	755
HpyAV	CCTTC	2 cut(s)	74, 434
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	4 cut(s)	254, 515, 581, 704
HpyF3I	CTNAG	1 cut(s)	82
HpySE526I	ACGT	1 cut(s)	402
Hsp92II	CATG	8 cut(s)	47, 238, 356, 480, 495, 667, 724, 742
Ksp22I	TGATCA	2 cut(s)	40, 660
Kzo9I	GATC	4 cut(s)	40, 208, 660, 669
LpnPI	CCDG	5 cut(s)	44, 285, 319, 519, 777
Lsp1109I	GCAGC	2 cut(s)	179, 716
LweI	GCATC	1 cut(s)	613
MaeI	CTAG	3 cut(s)	221, 717, 758
MaeII	ACGT	1 cut(s)	402
MalI	GATC	4 cut(s)	42, 210, 662, 671
MboI	GATC	4 cut(s)	40, 208, 660, 669
MboII	GAAGA	4 cut(s)	287, 382, 428, 608
MfeI	CAATTG	1 cut(s)	212
MhlI	GDGCHC	1 cut(s)	573
MlsI	TGGCCA	2 cut(s)	301, 525
MluCI	AATT	7 cut(s)	153, 212, 315, 576, 605, 641, 767
MluNI	TGGCCA	2 cut(s)	301, 525
MlyI	GAGTC	2 cut(s)	289, 465
MmeI	TCCRAC	2 cut(s)	267, 591
MnlI	CCTC	8 cut(s)	91, 196, 329, 349, 359, 454, 621, 787
Mox20I	TGGCCA	2 cut(s)	301, 525
MscI	TGGCCA	2 cut(s)	301, 525
MseI	TTAA	2 cut(s)	15, 93
MslI	CAYNNNNRTG	1 cut(s)	743
Msp20I	TGGCCA	2 cut(s)	301, 525
MspI	CCGG	1 cut(s)	272
MspR9I	CCNGG	1 cut(s)	272
MunI	CAATTG	1 cut(s)	212
NciI	CCSGG	1 cut(s)	272
NcoI	CCATGG	1 cut(s)	491
NdeII	GATC	4 cut(s)	40, 208, 660, 669
NlaIII	CATG	8 cut(s)	47, 238, 356, 480, 495, 667, 724, 742
NlaIV	GGNNCC	1 cut(s)	79
NspI	RCATGY	3 cut(s)	480, 724, 742
PagI	TCATGA	1 cut(s)	663
PceI	AGGCCT	1 cut(s)	715
PciI	ACATGT	1 cut(s)	476
PcsI	WCGNNNNNNNCGW	1 cut(s)	564
PfeI	GAWTC	2 cut(s)	124, 359
PkrI	GCNGC	2 cut(s)	194, 706
PleI	GAGTC	2 cut(s)	288, 465
PpsI	GAGTC	2 cut(s)	288, 465
PscI	ACATGT	1 cut(s)	476
PspN4I	GGNNCC	1 cut(s)	79
PspPI	GGNCC	2 cut(s)	61, 269
RsaI	GTAC	4 cut(s)	219, 227, 233, 347
RsaNI	GTAC	4 cut(s)	218, 226, 232, 346
RseI	CAYNNNNRTG	1 cut(s)	743
SaqAI	TTAA	2 cut(s)	15, 93
SatI	GCNGC	2 cut(s)	193, 705
Sau3AI	GATC	4 cut(s)	40, 208, 660, 669
Sau96I	GGNCC	2 cut(s)	61, 269
SchI	GAGTC	2 cut(s)	289, 465
ScrFI	CCNGG	1 cut(s)	272
SduI	GDGCHC	1 cut(s)	573
SetI	ASST	9 cut(s)	83, 102, 186, 340, 351, 405, 459, 544, 632
SfaNI	GCATC	1 cut(s)	613
SmiMI	CAYNNNNRTG	1 cut(s)	743
SmlI	CTYRAG	2 cut(s)	179, 458
SmoI	CTYRAG	2 cut(s)	179, 458
SpeI	ACTAGT	2 cut(s)	220, 757
Sse9I	AATT	7 cut(s)	153, 212, 315, 576, 605, 641, 767
SseBI	AGGCCT	1 cut(s)	715
SspMI	CTAG	3 cut(s)	221, 717, 758
StuI	AGGCCT	1 cut(s)	715
StyD4I	CCNGG	1 cut(s)	270
StyI	CCWWGG	2 cut(s)	491, 804
TaiI	ACGT	1 cut(s)	405
TaqI	TCGA	2 cut(s)	113, 573
TasI	AATT	7 cut(s)	153, 212, 315, 576, 605, 641, 767
TatI	WGTACW	1 cut(s)	231
TfiI	GAWTC	2 cut(s)	124, 359
Tru1I	TTAA	2 cut(s)	15, 93
Tru9I	TTAA	2 cut(s)	15, 93
TscAI	CASTG	1 cut(s)	522
TseI	GCWGC	2 cut(s)	192, 704
TspDTI	ATGAA	1 cut(s)	383
TspRI	CASTG	1 cut(s)	522
XagI	CCTNNNNNAGG	1 cut(s)	353
XapI	RAATTY	3 cut(s)	315, 641, 767
XceI	RCATGY	3 cut(s)	480, 724, 742
XmiI	GTMKAC	1 cut(s)	481
XspI	CTAG	3 cut(s)	221, 717, 758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.