Rmu_sc0001608.1_g000023

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001608.1
OG0000292
Physical Location & Seq
Reverse (-)
134565 .. 136976
2412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001608.1_g000023.1.cds

Sequence Viewer

Length: 1158 bp
atgggcaataatagaatcttatctaagtttgcttcatacatagatttgaaaggggtggacctgcagactggcaaatttaccttgaggcaagtcaaaactgccacgaacaactttgacgtagcaaacaagattggagaaggtggttttggtcctgtttacaggggccttctatcagacaacactgcaattgctgttaagaagctttcagctaaatcgaagcaaggaaatcgtgaatttgtgaatgagataggcatgatttctgctctgcaacaccctcaccttgtcaagctttatggatgctgtattgaaggaaataacttgttgcttgtctatgagtacatggaaaacaatagtctcgcacgtgctctatttggcccaaaagaaagtcaggtcatgaagctggactggtcaacaaggcataggatttgtgttggtatagccagaggtttggcttacctccatgaggaatcaaggttgaagatcgttcatagagacatcaaagctactaatgtgctacttgataaaaatcttttcccaaagatatctgactttggattggccaagcttgatgaagacgataatacccacataagcactcggattgctggaacttttggttatatggcacctgaatatgcaatgcggggttatctaactgataaagcagatgtttatagtttcggaattcttgtattggaaatggtcagtggaaggtgcaatacaacttaccgctcaaaggaagaatgcttttatcttctagattgggcacttcttctaaaagagagagcaagcttgttggacctggtggatccaaggttgggctcagagttcaacaaagaagagatgatttctacgatcaatattgctctcctttgttctaatgcttcttcagcagttaggcccgccatgtcttcagtggtgagcatgcttgaaggtaaggcttctgttccggaggtggtctttgatccaaacgcttcaattaatgaaatcaatgagatgaggaaacattttcaatccattattgaagaaaacaatggtgaccctgagagtcagaaacaaactatgtcgattgaagggtcgtggactgcttcatctacatctgctcaagacctctatccagtccgccctgattcatattattgggagaatagaaattag

Protein Analysis

385

Amino Acids

43.13

Weight (kDa)

6.22

Isoelectric Point (pI)

35.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000292)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53420 AT3G14840
fragaria_vesca FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17851
malus_domestica MD03G1246600.v1.1 MD06G1045200.v1.1 MD06G1045400.v1.1 MD11G1267800.v1.1 MD11G1267900.v1.1 MD11G1268100.v1.1 MD11G1268300.v1.1 MD11G1268500.v1.1 MD11G1268600.v1.1
prunus_persica Prupe.4G157700_v2.0.a1 Prupe.4G157700_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1
pyrus_communis pycom03g19540 pycom11g23600 pycom11g23630 pycom11g23690 pycom11g23720 pycom11g23730 pycom11g23740 pycom11g23750
rosa_chinensis RchiOBHm_Chr0c40g0503411 RchiOBHm_Chr0c40g0503421 RchiOBHm_Chr5g0029631 RchiOBHm_Chr5g0029661 RchiOBHm_Chr5g0029701 RchiOBHm_Chr5g0029741 RchiOBHm_Chr5g0029771 RchiOBHm_Chr5g0029781 RchiOBHm_Chr5g0029811 RchiOBHm_Chr5g0029851 RchiOBHm_Chr5g0029871 RchiOBHm_Chr5g0029891 RchiOBHm_Chr7g0222221
rosa_laevigata RLG00000017380 RLG00000032873 RLG00000033188 RLG00000033190 RLG00000033192 RLG00000033193 RLG00000033194 RLG00000033196 RLG00000033199 RLG00000033238
rosa_multiflora Rmu_co8359987.1_g000001 Rmu_co8444909.1_g000001 Rmu_sc0001608.1_g000007 Rmu_sc0001608.1_g000009 Rmu_sc0001608.1_g000013 Rmu_sc0001608.1_g000018 Rmu_sc0001608.1_g000023 Rmu_sc0001608.1_g000040 Rmu_sc0003238.1_g000016 Rmu_sc0003368.1_g000026 Rmu_sc0003368.1_g000034 Rmu_sc0003368.1_g000043 Rmu_sc0003368.1_g000047 Rmu_sc0003368.1_g000052 Rmu_sc0003368.1_g000054 Rmu_sc0004963.1_g000001
rosa_roxburghii Rroxscaffold_1G00050080 Rroxscaffold_1G00050090 Rroxscaffold_1G00050110 Rroxscaffold_1G00050120 Rroxscaffold_1G00050180 Rroxscaffold_1G00050190 Rroxscaffold_1G00050220 Rroxscaffold_1G00050270 Rroxscaffold_1G00050300
rosa_rugosa Rorug04G0065200 Rorug05G0114900 Rorug05G0115000 Rorug05G0115100 Rorug05G0120100 Rorug05G0238900
rosa_samantha Rh5AG207800 Rh5AG208000 Rh5AG208300 Rh5AG208400 Rh5AG208800 Rh5AG294900 Rh5AG295000 Rh5AG295400 Rh5CG230400 Rh7AG347800
rosa_wichuraiana Rw0G005370 Rw0G012460 Rw0G019060 Rw5G018910 Rw5G018920 Rw5G018930 Rw5G018940 Rw5G018960 Rw5G018970 Rw5G018980 Rw5G018990 Rw5G019000 Rw7G029840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 69
AccB1I GGYRCC 1 cut(s) 625
AccBSI CCGCTC 1 cut(s) 732
AccIII TCCGGA 1 cut(s) 949
AciI CCGC 4 cut(s) 643, 730, 903, 1123
AclWI GGATC 3 cut(s) 803, 816, 959
AcoI YGGCCR 1 cut(s) 558
AcsI RAATTY 3 cut(s) 74, 233, 684
AcuI CTGAAG 2 cut(s) 873, 897
AcvI CACGTG 1 cut(s) 362
AfaI GTAC 1 cut(s) 338
AfiI CCNNNNNNNGG 3 cut(s) 463, 736, 818
AgsI TTSAA 9 cut(s) 49, 308, 478, 832, 932, 978, 1013, 1025, 1073
AjnI CCWGG 1 cut(s) 801
AjuI GAANNNNNNNTTGG 2 cut(s) 129, 161
AluBI AGCT 7 cut(s) 202, 209, 289, 400, 503, 565, 792
AluI AGCT 7 cut(s) 202, 209, 289, 400, 503, 565, 792
Alw21I GWGCWC 1 cut(s) 367
Alw26I GTCTC 2 cut(s) 359, 486
AlwI GGATC 3 cut(s) 803, 816, 959
Aor13HI TCCGGA 1 cut(s) 949
AoxI GGCC 4 cut(s) 163, 373, 558, 899
ApoI RAATTY 3 cut(s) 74, 233, 684
AseI ATTAAT 1 cut(s) 981
AspS9I GGNCC 6 cut(s) 58, 149, 163, 374, 799, 900
AsuHPI GGTGA 3 cut(s) 269, 931, 1049
AvaII GGWCC 3 cut(s) 58, 149, 799
BaeGI GKGCMC 1 cut(s) 769
BalI TGGCCA 1 cut(s) 560
BamHI GGATCC 1 cut(s) 808
BanI GGYRCC 1 cut(s) 625
BanII GRGCYC 1 cut(s) 824
BarI GAAGNNNNNNTAC 2 cut(s) 703, 735
BbrPI CACGTG 1 cut(s) 362
BbsI GAAGAC 2 cut(s) 579, 903
Bbv12I GWGCWC 1 cut(s) 367
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BciT130I CCWGG 1 cut(s) 803
BcoDI GTCTC 2 cut(s) 359, 486
BfaI CTAG 1 cut(s) 758
BfmI CTRYAG 1 cut(s) 62
BfuAI ACCTGC 1 cut(s) 69
Bme1390I CCNGG 1 cut(s) 803
Bme18I GGWCC 3 cut(s) 58, 149, 799
BmgT120I GGNCC 6 cut(s) 58, 149, 163, 374, 799, 900
BmiI GGNNCC 3 cut(s) 164, 627, 810
BmrFI CCNGG 1 cut(s) 803
BmsI GCATC 1 cut(s) 287
BpiI GAAGAC 2 cut(s) 579, 903
BpuEI CTTGAG 2 cut(s) 103, 1089
BsaAI YACGTR 1 cut(s) 362
BsaBI GATNNNNATC 1 cut(s) 525
BsaJI CCNNGG 1 cut(s) 812
BsaWI WCCGGW 1 cut(s) 949
Bsc4I CCNNNNNNNGG 3 cut(s) 463, 736, 818
Bse1I ACTGG 3 cut(s) 73, 410, 1118
Bse3DI GCAATG 1 cut(s) 645
Bse8I GATNNNNATC 1 cut(s) 525
BseAI TCCGGA 1 cut(s) 949
BseBI CCWGG 1 cut(s) 803
BseDI CCNNGG 1 cut(s) 812
BseGI GGATG 1 cut(s) 302
BseJI GATNNNNATC 1 cut(s) 525
BseLI CCNNNNNNNGG 3 cut(s) 463, 736, 818
BseMI GCAATG 1 cut(s) 645
BseMII CTCAG 2 cut(s) 837, 1035
BseNI ACTGG 3 cut(s) 73, 410, 1118
BseSI GKGCMC 1 cut(s) 769
BshFI GGCC 4 cut(s) 165, 375, 560, 901
BshNI GGYRCC 1 cut(s) 625
BsiHKAI GWGCWC 1 cut(s) 367
BsiSI CCGG 1 cut(s) 950
BslI CCNNNNNNNGG 3 cut(s) 463, 736, 818
BsmAI GTCTC 2 cut(s) 359, 486
BsmI GAATGC 1 cut(s) 749
BsnI GGCC 4 cut(s) 165, 375, 560, 901
Bsp1286I GDGCHC 3 cut(s) 367, 769, 824
Bsp13I TCCGGA 1 cut(s) 949
Bsp143I GATC 4 cut(s) 480, 808, 855, 964
BspACI CCGC 4 cut(s) 643, 730, 903, 1123
BspANI GGCC 4 cut(s) 165, 375, 560, 901
BspCNI CTCAG 2 cut(s) 836, 1036
BspEI TCCGGA 1 cut(s) 949
BspHI TCATGA 1 cut(s) 393
BspLI GGNNCC 3 cut(s) 164, 627, 810
BspMAI CTGCAG 1 cut(s) 66
BspMI ACCTGC 1 cut(s) 69
BspPI GGATC 3 cut(s) 803, 816, 959
BspT107I GGYRCC 1 cut(s) 625
BsrBI CCGCTC 1 cut(s) 732
BsrDI GCAATG 1 cut(s) 645
BsrI ACTGG 3 cut(s) 73, 410, 1118
BssECI CCNNGG 1 cut(s) 812
BssMI GATC 4 cut(s) 480, 808, 855, 964
BssT1I CCWWGG 1 cut(s) 812
Bst2UI CCWGG 1 cut(s) 803
Bst6I CTCTTC 1 cut(s) 834
BstBAI YACGTR 1 cut(s) 362
BstC8I GCNNGC 3 cut(s) 790, 903, 926
BstDEI CTNAG 3 cut(s) 24, 823, 1044
BstEII GGTNACC 1 cut(s) 1037
BstENI CCTNNNNNAGG 1 cut(s) 461
BstF5I GGATG 1 cut(s) 302
BstKTI GATC 4 cut(s) 483, 811, 858, 967
BstMAI GTCTC 2 cut(s) 359, 486
BstMBI GATC 4 cut(s) 480, 808, 855, 964
BstMWI GCNNNNNNNGC 1 cut(s) 890
BstNI CCWGG 1 cut(s) 803
BstNSI RCATGY 1 cut(s) 928
BstPI GGTNACC 1 cut(s) 1037
BstSCI CCNGG 1 cut(s) 801
BstSFI CTRYAG 1 cut(s) 62
BstSLI GKGCMC 1 cut(s) 769
BstV2I GAAGAC 2 cut(s) 579, 903
BstX2I RGATCY 1 cut(s) 808
BstXI CCANNNNNNTGG 1 cut(s) 448
BstYI RGATCY 1 cut(s) 808
BsuRI GGCC 4 cut(s) 165, 375, 560, 901
BtsCI GGATG 1 cut(s) 302
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 3 cut(s) 180, 712, 921
BveI ACCTGC 1 cut(s) 69
Cac8I GCNNGC 3 cut(s) 790, 903, 926
CciI TCATGA 1 cut(s) 393
Cfr13I GGNCC 6 cut(s) 58, 149, 163, 374, 799, 900
CsiI ACCWGGT 1 cut(s) 801
Csp6I GTAC 1 cut(s) 337
CviAII CATG 6 cut(s) 253, 340, 394, 461, 907, 925
CviQI GTAC 1 cut(s) 337
DdeI CTNAG 3 cut(s) 24, 823, 1044
DpnI GATC 4 cut(s) 482, 810, 857, 966
DpnII GATC 4 cut(s) 480, 808, 855, 964
EaeI YGGCCR 1 cut(s) 558
Eam1104I CTCTTC 1 cut(s) 834
EarI CTCTTC 1 cut(s) 834
EciI GGCGGA 1 cut(s) 1112
Eco130I CCWWGG 1 cut(s) 812
Eco24I GRGCYC 1 cut(s) 824
Eco32I GATATC 1 cut(s) 543
Eco47I GGWCC 3 cut(s) 58, 149, 799
Eco57I CTGAAG 2 cut(s) 873, 897
Eco72I CACGTG 1 cut(s) 362
Eco91I GGTNACC 1 cut(s) 1037
EcoNI CCTNNNNNAGG 1 cut(s) 461
EcoO109I RGGNCCY 1 cut(s) 163
EcoO65I GGTNACC 1 cut(s) 1037
EcoRI GAATTC 1 cut(s) 684
EcoRII CCWGG 1 cut(s) 801
EcoRV GATATC 1 cut(s) 543
EcoT14I CCWWGG 1 cut(s) 812
EcoT38I GRGCYC 1 cut(s) 824
ErhI CCWWGG 1 cut(s) 812
FaeI CATG 6 cut(s) 256, 343, 397, 464, 910, 928
FatI CATG 6 cut(s) 252, 339, 393, 460, 906, 924
FauI CCCGC 2 cut(s) 636, 910
FokI GGATG 1 cut(s) 309
FriOI GRGCYC 1 cut(s) 824
FspBI CTAG 1 cut(s) 758
HaeIII GGCC 4 cut(s) 165, 375, 560, 901
HapII CCGG 1 cut(s) 950
Hin1II CATG 6 cut(s) 256, 343, 397, 464, 910, 928
HincII GTYRAC 1 cut(s) 411
HindII GTYRAC 1 cut(s) 411
HindIII AAGCTT 4 cut(s) 200, 287, 563, 790
HinfI GANTC 4 cut(s) 15, 467, 1048, 1130
HpaII CCGG 1 cut(s) 950
HphI GGTGA 3 cut(s) 269, 931, 1049
Hpy166II GTNNAC 4 cut(s) 58, 157, 411, 1083
Hpy188I TCNGA 6 cut(s) 175, 547, 600, 683, 826, 1053
Hpy188III TCNNGA 5 cut(s) 230, 394, 758, 950, 1106
Hpy8I GTNNAC 4 cut(s) 58, 157, 411, 1083
HpyAV CCTTC 6 cut(s) 131, 176, 302, 705, 926, 1067
HpyCH4IV ACGT 2 cut(s) 117, 361
HpyCH4V TGCA 5 cut(s) 64, 185, 268, 638, 717
HpyF10VI GCNNNNNNNGC 1 cut(s) 890
HpyF3I CTNAG 3 cut(s) 24, 823, 1044
HpySE526I ACGT 2 cut(s) 117, 361
Hsp92II CATG 6 cut(s) 256, 343, 397, 464, 910, 928
Kpn2I TCCGGA 1 cut(s) 949
Kzo9I GATC 4 cut(s) 480, 808, 855, 964
LweI GCATC 1 cut(s) 287
MabI ACCWGGT 1 cut(s) 801
MaeI CTAG 1 cut(s) 758
MaeII ACGT 2 cut(s) 117, 361
MaeIII GTNAC 1 cut(s) 1037
MalI GATC 4 cut(s) 482, 810, 857, 966
MbiI CCGCTC 1 cut(s) 732
MboI GATC 4 cut(s) 480, 808, 855, 964
MboII GAAGA 9 cut(s) 490, 584, 746, 752, 764, 851, 879, 903, 1037
MfeI CAATTG 1 cut(s) 186
MflI RGATCY 1 cut(s) 808
MhlI GDGCHC 3 cut(s) 367, 769, 824
MlsI TGGCCA 1 cut(s) 560
MluCI AATT 6 cut(s) 74, 186, 233, 684, 978, 1153
MluNI TGGCCA 1 cut(s) 560
MlyI GAGTC 1 cut(s) 1057
MmeI TCCRAC 1 cut(s) 777
MnlI CCTC 8 cut(s) 78, 285, 437, 457, 467, 946, 993, 1121
Mox20I TGGCCA 1 cut(s) 560
MroI TCCGGA 1 cut(s) 949
MscI TGGCCA 1 cut(s) 560
MseI TTAA 2 cut(s) 195, 981
Msp20I TGGCCA 1 cut(s) 560
MspI CCGG 1 cut(s) 950
MspR9I CCNGG 1 cut(s) 803
MunI CAATTG 1 cut(s) 186
Mva1269I GAATGC 1 cut(s) 749
MvaI CCWGG 1 cut(s) 803
MwoI GCNNNNNNNGC 1 cut(s) 890
NdeII GATC 4 cut(s) 480, 808, 855, 964
NlaIII CATG 6 cut(s) 256, 343, 397, 464, 910, 928
NlaIV GGNNCC 3 cut(s) 164, 627, 810
NmuCI GTSAC 1 cut(s) 1037
NspI RCATGY 1 cut(s) 928
PaeI GCATGC 1 cut(s) 928
PagI TCATGA 1 cut(s) 393
PctI GAATGC 1 cut(s) 749
PfeI GAWTC 3 cut(s) 15, 467, 1130
PleI GAGTC 1 cut(s) 1056
PmaCI CACGTG 1 cut(s) 362
PmlI CACGTG 1 cut(s) 362
PpsI GAGTC 1 cut(s) 1056
Ppu21I YACGTR 1 cut(s) 362
PshBI ATTAAT 1 cut(s) 981
Psp6I CCWGG 1 cut(s) 801
PspCI CACGTG 1 cut(s) 362
PspEI GGTNACC 1 cut(s) 1037
PspGI CCWGG 1 cut(s) 801
PspN4I GGNNCC 3 cut(s) 164, 627, 810
PspPI GGNCC 6 cut(s) 58, 149, 163, 374, 799, 900
PstI CTGCAG 1 cut(s) 66
PsuI RGATCY 1 cut(s) 808
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
SaqAI TTAA 2 cut(s) 195, 981
Sau3AI GATC 4 cut(s) 480, 808, 855, 964
Sau96I GGNCC 6 cut(s) 58, 149, 163, 374, 799, 900
SchI GAGTC 1 cut(s) 1057
ScrFI CCNGG 1 cut(s) 803
SduI GDGCHC 3 cut(s) 367, 769, 824
SexAI ACCWGGT 1 cut(s) 801
SfaNI GCATC 1 cut(s) 287
SfcI CTRYAG 1 cut(s) 62
SinI GGWCC 3 cut(s) 58, 149, 799
SmlI CTYRAG 2 cut(s) 82, 1104
SmoI CTYRAG 2 cut(s) 82, 1104
SphI GCATGC 1 cut(s) 928
Sse9I AATT 6 cut(s) 74, 186, 233, 684, 978, 1153
SsiI CCGC 4 cut(s) 643, 730, 903, 1123
SspI AATATT 1 cut(s) 862
SspMI CTAG 1 cut(s) 758
StyD4I CCNGG 1 cut(s) 801
StyI CCWWGG 1 cut(s) 812
TaiI ACGT 2 cut(s) 120, 364
TaqI TCGA 2 cut(s) 215, 1067
TasI AATT 6 cut(s) 74, 186, 233, 684, 978, 1153
TatI WGTACW 1 cut(s) 336
TfiI GAWTC 3 cut(s) 15, 467, 1130
Tru1I TTAA 2 cut(s) 195, 981
Tru9I TTAA 2 cut(s) 195, 981
TscAI CASTG 3 cut(s) 187, 712, 921
TseFI GTSAC 1 cut(s) 1037
Tsp45I GTSAC 1 cut(s) 1037
TspDTI ATGAA 7 cut(s) 24, 410, 476, 585, 999, 1080, 1122
TspRI CASTG 3 cut(s) 187, 712, 921
VpaK11BI GGWCC 3 cut(s) 58, 149, 799
VspI ATTAAT 1 cut(s) 981
XagI CCTNNNNNAGG 1 cut(s) 461
XapI RAATTY 3 cut(s) 74, 233, 684
XbaI TCTAGA 1 cut(s) 757
XceI RCATGY 1 cut(s) 928
XcmI CCANNNNNNNNNTGG 1 cut(s) 913
XspI CTAG 1 cut(s) 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.